Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp7g22670 Schrenkiella parvula HOM05D004430 ORTHO05D005088 0.0e+00 2724.1 1440 100.0
Thhalv10024213m.g Eutrema salsugineum HOM05D004430 ORTHO05D005088 0.0e+00 2096.2 1493 77.4
Thhalv10024214m.g Eutrema salsugineum HOM05D004430 ORTHO05D005088 0.0e+00 2070.4 1476 77.8
CARHR232060 Cardamine hirsuta HOM05D004430 ORTHO05D005088 0.0e+00 2062.3 1456 77.8
AT4G24680 Arabidopsis thaliana HOM05D004430 ORTHO05D005088 0.0e+00 2059.3 1455 77.3
BraA03t14619Z Brassica rapa HOM05D004430 ORTHO05D005088 0.0e+00 2028.1 1458 77.7
A03p55450 Brassica napus HOM05D004430 ORTHO05D005088 0.0e+00 2027.3 1451 77.9
AL7G28520 Arabidopsis lyrata HOM05D004430 ORTHO05D005088 0.0e+00 2022.3 1457 76.9
C07p53740 Brassica napus HOM05D004430 ORTHO05D005088 0.0e+00 1999.9 1456 77.5
BolC7t45865H Brassica oleracea HOM05D004430 ORTHO05D005088 0.0e+00 1993.0 1463 77.2
BcaC06g32869 Brassica carinata HOM05D004430 ORTHO05D005088 0.0e+00 1980.3 1452 76.2
Carub.0007s1638 Capsella rubella HOM05D004430 ORTHO05D005088 0.0e+00 1974.5 1466 74.7
C01p20010 Brassica napus HOM05D004430 ORTHO05D005088 0.0e+00 1907.9 1452 74.4
BraA01t01536Z Brassica rapa HOM05D004430 ORTHO05D005088 0.0e+00 1904.8 1465 74.0
A01p16020 Brassica napus HOM05D004430 ORTHO05D005088 0.0e+00 1889.8 1457 74.1
BolC1t01928H Brassica oleracea HOM05D004430 ORTHO05D005088 0.0e+00 1885.9 1465 73.3
BcaC09g50842 Brassica carinata HOM05D004430 ORTHO05D005088 0.0e+00 1706.8 1435 69.1
BcaB03g12441 Brassica carinata HOM05D004430 ORTHO05D005088 0.0e+00 1648.6 1450 66.3
Aa31LG4G9770 Aethionema arabicum HOM05D004430 ORTHO05D005088 0.0e+00 1647.1 1456 66.1
THA.LOC104809247 Tarenaya hassleriana HOM05D004430 ORTHO05D005088 0.0e+00 1261.5 1514 53.7
THA.LOC104809778 Tarenaya hassleriana HOM05D004430 ORTHO05D005088 0.0e+00 1172.1 1495 51.6
Thecc.03G018800 Theobroma cacao HOM05D004430 ORTHO05D005088 2.7e-219 766.9 1588 38.0
Gorai.005G135600 Gossypium raimondii HOM05D004430 ORTHO05D005088 4.6e-211 739.6 1606 38.0
Gohir.A03G089900 Gossypium hirsutum HOM05D004430 ORTHO05D005088 3.0e-210 736.9 1607 38.0
Gohir.D02G117900 Gossypium hirsutum HOM05D004430 ORTHO05D005088 8.8e-210 735.3 1606 37.9
Atru.chr9.2519 Acer truncatum HOM05D004430 ORTHO05D005088 1.2e-206 724.9 1673 37.5
COL.COLO4_30100 Corchorus olitorius HOM05D004430 ORTHO05D005088 1.8e-202 711.1 1625 37.2
GSVIVG01007703001 Vitis vinifera HOM05D004430 ORTHO05D005088 1.2e-198 698.4 1500 38.1
Duzib084G1065 Durio zibethinus HOM05D004430 ORTHO05D005088 5.5e-196 689.5 1606 36.5
MD06G1170800 Malus domestica HOM05D004430 ORTHO05D005088 5.3e-191 672.9 1635 36.8
Dinv20629 Davidia involucrata HOM05D004430 ORTHO05D005088 6.5e-189 666.0 1627 35.9
Potri.015G079800 Populus trichocarpa HOM05D004430 ORTHO05D005088 9.4e-188 662.1 1598 36.4
Duzib205G1695 Durio zibethinus HOM05D004430 ORTHO05D005088 1.2e-187 661.8 1614 35.9
Duzib068G0887 Durio zibethinus HOM05D004430 ORTHO05D005088 1.8e-186 657.9 1606 35.2
Potri.012G088500 Populus trichocarpa HOM05D004430 ORTHO05D005088 2.5e-180 637.5 1602 35.5
Lj4g0003819 Lotus japonicus HOM05D004430 ORTHO05D005088 2.1e-179 634.4 1622 36.0
RcHm_v2.0_Chr7g0193171 Rosa chinensis HOM05D004430 ORTHO05D005088 2.1e-179 634.4 1617 35.3
Glyma.17G087600 Glycine max HOM05D004430 ORTHO05D005088 3.6e-179 633.6 1620 36.0
Prupe.5G170400 Prunus persica HOM05D004430 ORTHO05D005088 1.2e-177 628.6 1702 34.5
CSS0010843 Camellia sinensis var. sinensis HOM05D004430 ORTHO05D005088 7.5e-177 625.9 1603 35.1
Manes.06G107200 Manihot esculenta HOM05D004430 ORTHO05D005088 1.3e-176 625.2 1678 34.8
Sabra15G0104100 Salix brachista HOM05D004430 ORTHO05D005088 2.8e-176 624.0 1572 35.6
Manes.06G107300 Manihot esculenta HOM05D004430 ORTHO05D005088 1.6e-174 618.2 1673 34.3
Lj9C446G12 Lonicera japonica HOM05D004430 ORTHO05D005088 1.3e-173 615.1 1567 35.5
QL10p008934 Quercus lobata HOM05D004430 ORTHO05D005088 1.7e-173 614.8 1639 35.5
Lalb_Chr12g0201701 Lupinus albus HOM05D004430 ORTHO05D005088 2.3e-173 614.4 1632 34.3
MD14G1176500 Malus domestica HOM05D004430 ORTHO05D005088 1.5e-172 611.7 1631 35.8
TWI39G0976 Tripterygium wilfordii HOM05D004430 ORTHO05D005088 1.2e-171 608.6 1608 35.0
FAN13G0016 Fragaria x ananassa HOM05D004430 ORTHO05D005088 1.8e-170 604.7 1609 35.7
Sabra12G0063700 Salix brachista HOM05D004430 ORTHO05D005088 4.0e-170 603.6 1672 34.0
FvH4_5g05640 Fragaria vesca HOM05D004430 ORTHO05D005088 3.4e-169 600.5 1607 35.4
Dinv38562 Davidia involucrata HOM05D004430 ORTHO05D005088 1.3e-168 598.6 1689 33.6
arahy.Tifrunner.gnm1.ann1.FBBL0Z Arachis hypogaea HOM05D004430 ORTHO05D005088 1.1e-167 595.5 1628 34.8
Lalb_Chr13g0297721 Lupinus albus HOM05D004430 ORTHO05D005088 3.5e-166 590.5 1581 35.3
Lalb_Chr07g0182821 Lupinus albus HOM05D004430 ORTHO05D005088 1.7e-165 588.2 1628 34.6
TWI14G0761 Tripterygium wilfordii HOM05D004430 ORTHO05D005088 1.1e-164 585.5 1606 34.6
Sed0016557 Sechium edule HOM05D004430 ORTHO05D005088 1.8e-162 578.2 1563 34.9
ClCG06G017130 Citrullus lanatus HOM05D004430 ORTHO05D005088 7.5e-161 572.8 1603 34.5
FAN04G2171 Fragaria x ananassa HOM05D004430 ORTHO05D005088 6.4e-160 569.7 1594 33.9
FAN18G2048 Fragaria x ananassa HOM05D004430 ORTHO05D005088 2.4e-159 567.8 1599 34.5
TPR.G28716 Trifolium pratense HOM05D004430 ORTHO05D005088 6.0e-158 563.1 1574 34.5
AUR62028764 Chenopodium quinoa HOM05D004430 ORTHO05D005088 7.8e-158 562.8 1610 33.9
FAN08G1542 Fragaria x ananassa HOM05D004430 ORTHO05D005088 1.0e-157 562.4 1611 34.5
FAN18G1146 Fragaria x ananassa HOM05D004430 ORTHO05D005088 2.3e-157 561.2 1616 34.3
VMungo1215G2998 Vigna mungo HOM05D004430 ORTHO05D005088 9.5e-156 555.8 1649 33.4
CsaV3_1G001360 Cucumis sativus L. HOM05D004430 ORTHO05D005088 6.4e-152 543.1 1588 33.6
MELO3C026283.2 Cucumis melo HOM05D004430 ORTHO05D005088 3.2e-151 540.8 1580 34.2
Glyma.05G039400 Glycine max HOM05D004430 ORTHO05D005088 5.1e-149 533.5 1612 33.1
TAR374G1038 Trochodendron aralioides HOM05D004430 ORTHO05D005088 5.6e-148 530.0 1671 33.3
Ca_16154_v3 Cicer arietinum L. HOM05D004430 ORTHO05D005088 7.3e-148 529.6 1600 33.7
Eucgr.B00248 Eucalyptus grandis HOM05D004430 ORTHO05D005088 2.8e-147 527.7 1611 33.5
Medtr3g077440 Medicago truncatula HOM05D004430 ORTHO05D005088 1.8e-146 525.0 1586 33.5
AUR62008183 Chenopodium quinoa HOM05D004430 ORTHO05D005088 5.2e-146 523.5 1581 33.2
Migut.D01964 Erythranthe guttata HOM05D004430 ORTHO05D005088 5.8e-145 520.0 1616 33.6
Nitab4.5_0003229g0080 Nicotiana tabacum HOM05D004430 ORTHO05D005088 6.4e-144 516.5 1625 33.4
vmacro19413 Vaccinium macrocarpon HOM05D004430 ORTHO05D005088 1.0e-141 509.2 1606 32.8
Sed0007760 Sechium edule HOM05D004430 ORTHO05D005088 6.6e-141 506.5 1562 32.7
SalBow6G6763 Salvia bowleyana HOM05D004430 ORTHO05D005088 1.4e-138 498.8 1624 31.9
Solyc03g112660.3 Solanum lycopersicum HOM05D004430 ORTHO05D005088 1.4e-138 498.8 1632 32.7
Sopen03g031740 Solanum pennellii HOM05D004430 ORTHO05D005088 6.9e-138 496.5 1644 32.5
SalBow6G6905 Salvia bowleyana HOM05D004430 ORTHO05D005088 5.8e-137 493.4 1626 32.0
Oeu036008.4 Olea europaea HOM05D004430 ORTHO05D005088 3.8e-136 490.7 1508 33.1
Ah.11g051460 Amaranthus hybridus HOM05D004430 ORTHO05D005088 2.4e-135 488.0 1590 32.6
CANSAT80G0620 Cannabis sativa HOM05D004430 ORTHO05D005088 1.6e-134 485.3 1641 32.4
Nitab4.5_0001207g0060 Nicotiana tabacum HOM05D004430 ORTHO05D005088 2.1e-134 485.0 1654 32.2
Ca_16155_v3 Cicer arietinum L. HOM05D004430 ORTHO05D005088 3.3e-132 477.6 1551 32.8
Phvul.003G202300 Phaseolus vulgaris HOM05D004430 ORTHO05D005088 4.3e-132 477.2 1661 31.5
Rhsim08G0174600 Rhododendron simsii HOM05D004430 ORTHO05D005088 3.6e-131 474.2 1611 32.7
Nn3g16781 Nelumbo nucifera HOM05D004430 ORTHO05D005088 4.0e-130 470.7 1663 31.1
Hund02762 Selenicereus undatus HOM05D004430 ORTHO05D005088 2.2e-128 464.9 1589 32.4
PGR083G1025 Punica granatum HOM05D004430 ORTHO05D005088 8.4e-128 463.0 1592 31.7
Cc04_g12380 Coffea canephora HOM05D004430 ORTHO05D005088 2.1e-126 458.4 1267 33.1
Peaxi162Scf00089g00174 Petunia axillaris HOM05D004430 ORTHO05D005088 1.3e-125 455.7 1640 31.2
EL10Ac5g10708 Beta vulgaris HOM05D004430 ORTHO05D005088 2.3e-125 454.9 1595 30.7
Sc04g0001690 Simmondsia chinensis HOM05D004430 ORTHO05D005088 7.6e-121 439.9 1543 32.7
MSTRG.4361 Avicennia marina HOM05D004430 ORTHO05D005088 1.7e-120 438.7 1583 31.4
Ciclev10018497m.g Citrus clementina HOM05D004430 ORTHO05D005088 6.4e-120 436.8 1438 32.1
Oeu024704.1 Olea europaea HOM05D004430 ORTHO05D005088 6.0e-118 430.3 1639 29.5
ECA232G4503 Erigeron canadensis HOM05D004430 ORTHO05D005088 1.5e-116 425.6 1501 30.9
MBI19_g24062_MAGBIO Magnolia biondii HOM05D004430 ORTHO05D005088 8.2e-115 419.9 1724 31.0
Medtr3g077450 Medicago truncatula HOM05D004430 ORTHO05D005088 4.2e-111 407.5 1578 30.7
CiPaw.11G023400 Carya illinoinensis HOM05D004430 ORTHO05D005088 1.4e-106 392.5 1533 30.0
CAN.G1166.22 Capsicum annuum HOM05D004430 ORTHO05D005088 1.8e-106 392.1 1629 29.3
HanXRQChr17g0548691 Helianthus annuus HOM05D004430 ORTHO05D005088 6.9e-106 390.2 1386 31.3
Aqoxy3G01105 Aquilegia oxysepala HOM05D004430 ORTHO05D005088 3.4e-105 387.9 1642 30.0
TPR.G28721 Trifolium pratense HOM05D004430 ORTHO05D005088 1.7e-104 385.6 1551 30.1
Psat5g115080 Pisum sativum HOM05D004430 ORTHO05D005088 4.6e-102 377.5 1567 30.1
SGA_v2.0_scaffold7G04148 Striga asiatica HOM05D004430 ORTHO05D005088 2.5e-100 371.7 1560 28.4
Psat5g115040 Pisum sativum HOM05D004430 ORTHO05D005088 9.7e-100 369.8 1558 29.3
Lsat_1_v5_gn_4_75700 Lactuca sativa HOM05D004430 ORTHO05D005088 4.8e-99 367.5 1518 30.2
HanXRQChr11g0348291 Helianthus annuus HOM05D004430 ORTHO05D005088 1.1e-98 366.3 583 44.3
PSO478G3312 Papaver somniferum HOM05D004430 ORTHO05D005088 1.1e-90 339.7 1721 28.6
arahy.Tifrunner.gnm1.ann1.I95HTR Arachis hypogaea HOM05D004430 ORTHO05D005088 1.1e-87 329.7 714 37.7
Actinidia19338 Actinidia chinensis HOM05D004430 ORTHO05D005088 1.9e-87 328.9 1207 30.8
PSO017G2086 Papaver somniferum HOM05D004430 ORTHO05D005088 7.2e-87 327.0 1705 28.5
CiPaw.12G028500 Carya illinoinensis HOM05D004430 ORTHO05D005088 1.6e-81 309.3 1345 30.4
ATR0757G157 Amborella trichopoda HOM05D004430 ORTHO05D005088 7.5e-76 290.4 1634 28.3
unitig_37.g12744 Utricularia gibba HOM05D004430 ORTHO05D005088 7.5e-76 290.4 1564 29.2
Actinidia19112 Actinidia chinensis HOM05D004430 ORTHO05D005088 1.3e-75 289.7 338 55.6
PGSC0003DMG402018164 Solanum tuberosum HOM05D004430 ORTHO05D005088 2.7e-65 255.4 1349 27.9
TAR622G0490 Trochodendron aralioides HOM05D004430 ORTHO05D005088 4.5e-65 254.6 938 31.9
Hma1.2p1_0046F.1_g026730 Hydrangea macrophylla HOM05D004430 ORTHO05D005088 1.1e-63 250.0 1176 29.1
Zm00001eb028710 Zea mays HOM05D004430 ORTHO05D005088 1.5e-60 239.6 1362 27.5
Cpa.g.sc153.6 Carica papaya HOM05D004430 ORTHO05D005088 1.6e-57 229.6 193 67.4
Zm00001eb136860 Zea mays HOM05D004430 ORTHO05D005088 2.9e-56 225.3 1604 25.7
MBI10_g44384_MAGBIO Magnolia biondii HOM05D004430 ORTHO05D005088 9.5e-55 220.3 201 61.7
MBI10_g44386_MAGBIO Magnolia biondii HOM05D004430 ORTHO05D005088 4.7e-54 218.0 1478 27.5
CDE02G0036 Ceratophyllum demersum HOM05D004430 ORTHO05D005088 8.0e-54 217.2 202 60.4
Haze_07543 Corylus avellana HOM05D004430 ORTHO05D005088 1.8e-50 206.1 1455 25.7
SHI17143 Sapria himalayana HOM05D004430 ORTHO05D005088 2.0e-49 202.6 637 33.1
CDE06G0437 Ceratophyllum demersum HOM05D004430 ORTHO05D005088 2.7e-49 202.2 1408 25.4
unitig_46.g18473 Utricularia gibba HOM05D004430 ORTHO05D007989 4.0e-45 188.3 1466 26.4
HPP92_006251 Vanilla planifolia HOM05D004430 ORTHO05D005088 4.0e-45 188.3 1440 25.1
HPP92_006241 Vanilla planifolia HOM05D004430 ORTHO05D005088 8.9e-45 187.2 211 55.5
HPP92_024337 Vanilla planifolia HOM05D004430 ORTHO05D005088 8.9e-45 187.2 1598 25.4
SEGI_40513 Sequoiadendron giganteum HOM05D004430 ORTHO05D005088 6.4e-43 181.0 519 34.9
Actinidia19110 Actinidia chinensis HOM05D005107 ORTHO05D006200 5.6e-39 167.9 492 30.5
THA.LOC104816711 Tarenaya hassleriana HOM05D004430 ORTHO05D005088 2.8e-38 165.6 298 43.6
Actinidia33085 Actinidia chinensis HOM05D004430 ORTHO05D005088 7.8e-33 147.5 685 28.0
BcaC06g32868 Brassica carinata HOM05D003157 ORTHO05D004447 3.3e-31 142.1 150 64.7
C07p53750 Brassica napus HOM05D003157 ORTHO05D004447 3.3e-31 142.1 150 64.7
Actinidia19111 Actinidia chinensis HOM05D004430 ORTHO05D005088 4.3e-31 141.7 432 33.3
HPP92_024330 Vanilla planifolia HOM05D004430 ORTHO05D005088 5.8e-28 131.3 1250 24.7
THA.LOC104822199 Tarenaya hassleriana HOM05D004430 ORTHO05D005088 1.3e-27 130.2 345 37.4
TAR622G0342 Trochodendron aralioides HOM05D004430 ORTHO05D005088 8.1e-22 110.9 86 66.3
Mapoly0057s0099 Marchantia polymorpha HOM05D004430 ORTHO05D005088 2.4e-21 109.4 490 31.6
Pp3c26_2830 Physcomitrium patens HOM05D004430 ORTHO05D005088 3.4e-20 105.5 517 30.2
Pp3c26_2670 Physcomitrium patens HOM05D004430 ORTHO05D005088 7.1e-18 97.8 235 38.7
Actinidia33086 Actinidia chinensis HOM05D004430 ORTHO05D005088 2.7e-17 95.9 311 32.2
SMO174G0145 Selaginella moellendorffii HOM05D004430 ORTHO05D005088 3.3e-15 89.0 793 25.1
AagrBONN_evm.TU.Sc2ySwM_344.4397 Anthoceros agrestis HOM05D004430 ORTHO05D005088 1.1e-13 84.0 473 29.6
CBR_g19277 Chara braunii HOM05D004430 ORTHO05D005088 1.1e-13 84.0 485 28.9
Psat2g086200 Pisum sativum HOM05D004430 ORTHO05D005088 9.9e-12 77.4 213 33.3
Pp3c4_23740 Physcomitrium patens HOM05D004430 ORTHO05D005088 1.3e-11 77.0 1778 22.6
Pp3c4_22960 Physcomitrium patens HOM05D004430 ORTHO05D005088 1.2e-09 70.5 1312 23.4
TAR622G0951 Trochodendron aralioides HOM05D004430 ORTHO05D005088 1.8e-08 66.6 109 41.3
Actinidia19337 Actinidia chinensis HOM05D004430 ORTHO05D005088 1.9e-07 63.2 93 44.1
Psat2g086240 Pisum sativum HOM05D004430 ORTHO05D005088 1.9e-07 63.2 240 28.8
Psat2g098600 Pisum sativum HOM05D003093 ORTHO05D005088 2.8e-06 59.3 199 31.2
TAR629G1829 Trochodendron aralioides HOM05D003072 ORTHO05D008464 3.7e-06 58.9 206 29.6
Psat1g046400 Pisum sativum HOM05D004430 ORTHO05D005088 4.8e-06 58.5 172 35.5


User provided reference genes

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