Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp7g21840 Schrenkiella parvula HOM05D004051 ORTHO05D004480 2.0e-36 155.2 75 100.0
BcaNung01095 Brassica carinata HOM05D004051 ORTHO05D004480 4.8e-35 150.6 75 96.0
Thhalv10026982m.g Eutrema salsugineum HOM05D004051 ORTHO05D004480 1.5e-33 145.6 75 92.0
BcaC09g50935 Brassica carinata HOM05D004051 ORTHO05D004480 2.6e-33 144.8 76 93.4
BcaNung04241 Brassica carinata HOM05D004051 ORTHO05D004480 2.2e-32 141.7 76 90.8
BcaNung04081 Brassica carinata HOM05D004051 ORTHO05D004480 1.1e-31 139.4 76 90.8
C01p19120 Brassica napus HOM05D004051 ORTHO05D004480 3.6e-30 134.4 73 90.4
BolC1t01838H Brassica oleracea HOM05D004051 ORTHO05D004480 1.8e-29 132.1 71 90.1
C07p53180 Brassica napus HOM05D004051 ORTHO05D004480 3.9e-29 131.0 75 84.0
A01p15190 Brassica napus HOM05D004051 ORTHO05D004480 1.5e-28 129.0 74 89.2
BraA01t01457Z Brassica rapa HOM05D004051 ORTHO05D004480 1.5e-28 129.0 74 89.2
CARHR231280 Cardamine hirsuta HOM05D004051 ORTHO05D004480 1.5e-28 129.0 77 83.1
AL7G29460 Arabidopsis lyrata HOM05D004051 ORTHO05D004480 3.3e-28 127.9 77 81.8
A03p54820 Brassica napus HOM05D004051 ORTHO05D004480 2.2e-27 125.2 70 85.7
BraA03t14549Z Brassica rapa HOM05D004051 ORTHO05D004480 2.2e-27 125.2 70 85.7
AT4G23885 Arabidopsis thaliana HOM05D004051 ORTHO05D004480 6.3e-27 123.6 78 82.1
Aa31LG6G7140 Aethionema arabicum HOM05D004051 ORTHO05D004480 7.0e-26 120.2 75 82.7
Carub.0007s1723 Capsella rubella HOM05D004051 ORTHO05D004480 1.5e-25 119.0 75 77.3
THA.LOC104815090 Tarenaya hassleriana HOM05D004051 ORTHO05D004480 1.1e-23 112.8 85 70.6
Gohir.D12G237933 Gossypium hirsutum HOM05D004051 ORTHO05D004480 8.8e-21 103.2 80 65.0
Gorai.008G254600 Gossypium raimondii HOM05D004051 ORTHO05D004480 8.8e-21 103.2 80 65.0
Duzib205G1876 Durio zibethinus HOM05D004051 ORTHO05D004480 1.5e-20 102.4 80 65.0
Manes.02G009700 Manihot esculenta HOM05D004051 ORTHO05D004480 7.4e-20 100.1 80 66.2
Gohir.A12G236600 Gossypium hirsutum HOM05D004051 ORTHO05D004480 1.7e-19 99.0 80 62.5
Thecc.03G298400 Theobroma cacao HOM05D004051 ORTHO05D004480 1.1e-18 96.3 80 61.2
Potri.003G140300 Populus trichocarpa HOM05D004051 ORTHO05D004480 4.1e-18 94.4 81 64.2
Sed0004965 Sechium edule HOM05D004051 ORTHO05D004480 4.1e-18 94.4 80 62.5
Glyma.01G225400 Glycine max HOM05D004051 ORTHO05D004480 7.0e-18 93.6 81 61.7
Gohir.D12G237800 Gossypium hirsutum HOM05D004051 ORTHO05D004480 9.1e-18 93.2 75 62.7
COL.COLO4_10706 Corchorus olitorius HOM05D004051 ORTHO05D004480 3.5e-17 91.3 76 63.2
Glyma.11G017600 Glycine max HOM05D004051 ORTHO05D004480 5.9e-17 90.5 77 59.7
HanXRQChr03g0083481 Helianthus annuus HOM05D004051 ORTHO05D004480 5.9e-17 90.5 81 55.6
CSS0008906 Camellia sinensis var. sinensis HOM05D004051 ORTHO05D004480 1.0e-16 89.7 81 59.3
TWI81G0780 Tripterygium wilfordii HOM05D004051 ORTHO05D004480 1.0e-16 89.7 80 63.8
CiPaw.11G121000 Carya illinoinensis HOM05D004051 ORTHO05D004480 1.3e-16 89.4 81 58.0
QL02p030350 Quercus lobata HOM05D004051 ORTHO05D004480 1.3e-16 89.4 79 59.5
Psat7g025560 Pisum sativum HOM05D004051 ORTHO05D004480 1.7e-16 89.0 80 57.5
Prupe.5G120400 Prunus persica HOM05D004051 ORTHO05D004480 1.7e-16 89.0 82 58.5
TWI15G0384 Tripterygium wilfordii HOM05D004051 ORTHO05D004480 1.7e-16 89.0 80 63.8
Duzib084G0187 Durio zibethinus HOM05D000749 ORTHO05D005685 3.8e-16 87.8 75 58.7
Lalb_Chr05g0224141 Lupinus albus HOM05D004051 ORTHO05D004480 3.8e-16 87.8 77 58.4
Dinv37531 Davidia involucrata HOM05D004051 ORTHO05D004480 5.0e-16 87.4 81 58.0
Phvul.002G298100 Phaseolus vulgaris HOM05D004051 ORTHO05D004480 5.0e-16 87.4 82 58.5
Actinidia22162 Actinidia chinensis HOM05D004051 ORTHO05D004480 1.1e-15 86.3 81 59.3
ECA240G0536 Erigeron canadensis HOM05D004051 ORTHO05D004480 2.5e-15 85.1 80 56.2
TAR629G1304 Trochodendron aralioides HOM05D004051 ORTHO05D004480 2.5e-15 85.1 85 55.3
Atru.chr9.1978 Acer truncatum HOM05D004051 ORTHO05D004480 4.2e-15 84.3 73 60.3
Atru.chr9.1993 Acer truncatum HOM05D004051 ORTHO05D004480 4.2e-15 84.3 73 60.3
arahy.Tifrunner.gnm1.ann1.T1KBZJ Arachis hypogaea HOM05D004051 ORTHO05D004480 4.2e-15 84.3 75 61.3
Ciclev10023430m.g Citrus clementina HOM05D004051 ORTHO05D004480 4.2e-15 84.3 71 63.4
Actinidia04200 Actinidia chinensis HOM05D004051 ORTHO05D004480 5.5e-15 84.0 81 56.8
RcHm_v2.0_Chr7g0194731 Rosa chinensis HOM05D004051 ORTHO05D004480 5.5e-15 84.0 79 57.0
Dinv38829 Davidia involucrata HOM05D004051 ORTHO05D004480 7.2e-15 83.6 81 56.8
FAN08G0063 Fragaria x ananassa HOM05D004051 ORTHO05D004480 7.2e-15 83.6 79 57.0
LjContig00312_ERROPOS870357g0027890 Lotus japonicus HOM05D004051 ORTHO05D004480 7.2e-15 83.6 80 55.0
Oeu054023.1 Olea europaea HOM05D004051 ORTHO05D004480 7.2e-15 83.6 75 61.3
FvH4_5g04640 Fragaria vesca HOM05D004051 ORTHO05D004480 9.4e-15 83.2 75 58.7
FAN18G0508 Fragaria x ananassa HOM05D004051 ORTHO05D004480 9.4e-15 83.2 75 58.7
DCAR_006488 Daucus carota HOM05D004051 ORTHO05D004480 1.2e-14 82.8 75 57.3
HanXRQChr13g0415281 Helianthus annuus HOM05D004051 ORTHO05D004480 1.2e-14 82.8 78 53.8
Nn1g01872 Nelumbo nucifera HOM05D004051 ORTHO05D004480 1.2e-14 82.8 81 55.6
GSVIVG01019535001 Vitis vinifera HOM05D004051 ORTHO05D004480 1.2e-14 82.8 85 52.9
CSS0023187 Camellia sinensis var. sinensis HOM05D004051 ORTHO05D004480 2.1e-14 82.0 81 55.6
Migut.A00641 Erythranthe guttata HOM05D004051 ORTHO05D004480 2.1e-14 82.0 86 54.7
MD06G1107300 Malus domestica HOM05D004051 ORTHO05D004480 2.1e-14 82.0 78 55.1
TPR.G25572 Trifolium pratense HOM05D004051 ORTHO05D004480 2.7e-14 81.6 76 53.9
arahy.Tifrunner.gnm1.ann1.E0UY0G Arachis hypogaea HOM05D004051 ORTHO05D004480 3.6e-14 81.3 75 60.0
unitig_88.g27640 Utricularia gibba HOM05D004051 ORTHO05D004480 3.6e-14 81.3 78 52.6
PGR042G1109 Punica granatum HOM05D004051 ORTHO05D004480 6.1e-14 80.5 73 58.9
Medtr8g099465 Medicago truncatula HOM05D004051 ORTHO05D004480 8.0e-14 80.1 68 57.4
Oeu063517.1 Olea europaea HOM05D004051 ORTHO05D004480 8.0e-14 80.1 82 54.9
Solyc08g008330.3 Solanum lycopersicum HOM05D004051 ORTHO05D004480 1.4e-13 79.3 83 54.2
Sopen08g004210 Solanum pennellii HOM05D004051 ORTHO05D004480 1.4e-13 79.3 83 54.2
Lj4g0013283 Lotus japonicus HOM05D004051 ORTHO05D004480 3.0e-13 78.2 75 53.3
CiPaw.05G255100 Carya illinoinensis HOM05D004051 ORTHO05D004480 4.0e-13 77.8 77 57.1
AUR62019374 Chenopodium quinoa HOM05D004051 ORTHO05D004480 4.0e-13 77.8 83 53.0
Solyc08g082390.3 Solanum lycopersicum HOM05D004051 ORTHO05D004480 4.0e-13 77.8 76 53.9
Sopen08g030650 Solanum pennellii HOM05D004051 ORTHO05D004480 5.2e-13 77.4 76 53.9
vmacro11468 Vaccinium macrocarpon HOM05D004051 ORTHO05D004480 5.2e-13 77.4 76 51.3
Atru.chr1.148 Acer truncatum HOM05D004051 ORTHO05D004480 6.8e-13 77.0 79 57.0
CDE02G2345 Ceratophyllum demersum HOM05D004051 ORTHO05D004480 8.8e-13 76.6 77 51.9
ClCG01G001670 Citrullus lanatus HOM05D004051 ORTHO05D004480 8.8e-13 76.6 85 51.8
SGA_v2.0_scaffold96G29014 Striga asiatica HOM05D004051 ORTHO05D004480 8.8e-13 76.6 80 52.5
CDE09G0659 Ceratophyllum demersum HOM05D004051 ORTHO05D004480 1.2e-12 76.3 83 48.2
Rhsim09G0205000 Rhododendron simsii HOM05D004051 ORTHO05D004480 1.2e-12 76.3 79 54.4
CiPaw.05G252200 Carya illinoinensis HOM05D004051 ORTHO05D004480 1.5e-12 75.9 77 55.8
Dinv29295 Davidia involucrata HOM05D004051 ORTHO05D004480 1.5e-12 75.9 81 54.3
Eucgr.E00869 Eucalyptus grandis HOM05D004051 ORTHO05D004480 1.5e-12 75.9 73 58.9
Gohir.D08G104000 Gossypium hirsutum HOM05D004051 ORTHO05D004480 1.5e-12 75.9 91 50.5
Gorai.004G111400 Gossypium raimondii HOM05D004051 ORTHO05D004480 1.5e-12 75.9 91 50.5
Hma1.2p1_1461F.1_g285050 Hydrangea macrophylla HOM05D004051 ORTHO05D004480 1.5e-12 75.9 71 59.2
Hma1.2p1_2808F.1_g328863 Hydrangea macrophylla HOM05D004051 ORTHO05D004480 1.5e-12 75.9 71 59.2
CiPaw.05G255500 Carya illinoinensis HOM05D004051 ORTHO05D004480 2.0e-12 75.5 77 55.8
Manes.06G159300 Manihot esculenta HOM05D004051 ORTHO05D004480 2.6e-12 75.1 76 55.3
Nn3g19011 Nelumbo nucifera HOM05D004051 ORTHO05D004480 2.6e-12 75.1 76 55.3
EL10Ac5g12918 Beta vulgaris HOM05D004051 ORTHO05D004480 3.4e-12 74.7 73 56.2
Phvul.002G164300 Phaseolus vulgaris HOM05D004051 ORTHO05D004480 3.4e-12 74.7 77 49.4
Sed0015186 Sechium edule HOM05D004051 ORTHO05D004480 3.4e-12 74.7 66 59.1
Hund04853 Selenicereus undatus HOM05D004051 ORTHO05D004480 3.4e-12 74.7 82 56.1
Thecc.03G195700 Theobroma cacao HOM05D004051 ORTHO05D004480 3.4e-12 74.7 89 52.8
GSVIVG01038715001 Vitis vinifera HOM05D004051 ORTHO05D004480 3.4e-12 74.7 70 55.7
MD06G1107200 Malus domestica HOM05D004051 ORTHO05D004480 4.4e-12 74.3 73 50.7
VMungo0251G1927 Vigna mungo HOM05D000749 ORTHO05D005685 5.7e-12 73.9 76 52.6
FAN13G0943 Fragaria x ananassa HOM05D004051 ORTHO05D004480 7.5e-12 73.6 76 52.6
QL09p009613 Quercus lobata HOM05D004051 ORTHO05D004480 7.5e-12 73.6 75 57.3
PSO063G6907 Papaver somniferum HOM05D004051 ORTHO05D004480 9.7e-12 73.2 77 53.2
Ah.07g197450 Amaranthus hybridus HOM05D004051 ORTHO05D004480 1.3e-11 72.8 73 57.5
Sabra03G0101300 Salix brachista HOM05D004051 ORTHO05D004480 1.3e-11 72.8 93 45.2
arahy.Tifrunner.gnm1.ann1.ZDLG37 Arachis hypogaea HOM05D004051 ORTHO05D004480 1.7e-11 72.4 73 56.2
Gohir.A08G096024 Gossypium hirsutum HOM05D004051 ORTHO05D004480 1.7e-11 72.4 91 49.5
Sc13g0009750 Simmondsia chinensis HOM05D004051 ORTHO05D004480 1.7e-11 72.4 78 52.6
CsaV3_5G001830 Cucumis sativus L. HOM05D000749 ORTHO05D005685 2.2e-11 72.0 91 48.4
Peaxi162Scf00102g01842 Petunia axillaris HOM05D004051 ORTHO05D004480 2.2e-11 72.0 79 49.4
Sed0007169 Sechium edule HOM05D004051 ORTHO05D004480 2.2e-11 72.0 82 52.4
Cc08_g16090 Coffea canephora HOM05D004051 ORTHO05D004480 2.8e-11 71.6 74 56.8
FvH4_7g31780 Fragaria vesca HOM05D004051 ORTHO05D004480 2.8e-11 71.6 74 52.7
FAN01G1391 Fragaria x ananassa HOM05D004051 ORTHO05D004480 2.8e-11 71.6 74 52.7
A02p40750 Brassica napus HOM05D004051 ORTHO05D004480 3.7e-11 71.2 82 51.2
Sc01g0010310 Simmondsia chinensis HOM05D004051 ORTHO05D004480 3.7e-11 71.2 82 51.2
CANSAT21G2574 Cannabis sativa HOM05D004051 ORTHO05D004480 4.8e-11 70.9 72 52.8
FAN18G2387 Fragaria x ananassa HOM05D004051 ORTHO05D004480 4.8e-11 70.9 69 55.1
Actinidia03163 Actinidia chinensis HOM05D004051 ORTHO05D004480 6.3e-11 70.5 83 50.6
BcaNung01214 Brassica carinata HOM05D004051 ORTHO05D004480 6.3e-11 70.5 78 51.3
Haze_09066 Corylus avellana HOM05D004051 ORTHO05D004480 6.3e-11 70.5 60 60.0
DCAR_010606 Daucus carota HOM05D004051 ORTHO05D004480 6.3e-11 70.5 71 53.5
RcHm_v2.0_Chr1g0381011 Rosa chinensis HOM05D004051 ORTHO05D004480 6.3e-11 70.5 74 52.7
CARHR189350 Cardamine hirsuta HOM05D004051 ORTHO05D004480 8.3e-11 70.1 76 53.9
MD01G1219400 Malus domestica HOM05D004051 ORTHO05D004480 8.3e-11 70.1 72 52.8
SalBow1G7115 Salvia bowleyana HOM05D004051 ORTHO05D004480 1.1e-10 69.7 79 49.4
Sp2g23150 Schrenkiella parvula HOM05D004051 ORTHO05D004480 1.1e-10 69.7 86 50.0
Hund14219 Selenicereus undatus HOM05D004051 ORTHO05D004480 1.1e-10 69.7 73 54.8
PGSC0003DMG400005791 Solanum tuberosum HOM05D004051 ORTHO05D004480 1.1e-10 69.7 84 48.8
PGSC0003DMG400012279 Solanum tuberosum HOM05D004051 ORTHO05D004480 1.1e-10 69.7 77 53.2
FAN10G0142 Fragaria x ananassa HOM05D004051 ORTHO05D004480 1.4e-10 69.3 74 51.4
PGR042G3499 Punica granatum HOM05D004051 ORTHO05D004480 1.4e-10 69.3 79 45.6
BcaNung01808 Brassica carinata HOM05D004051 ORTHO05D004480 1.8e-10 68.9 82 48.8
SalBow1G2120 Salvia bowleyana HOM05D004051 ORTHO05D004480 1.8e-10 68.9 79 49.4
Carub.0006s2191 Capsella rubella HOM05D004051 ORTHO05D004480 2.4e-10 68.6 76 52.6
Ca_17505_v3 Cicer arietinum L. HOM05D000749 ORTHO05D005685 2.4e-10 68.6 70 55.7
Potri.012G011600 Populus trichocarpa HOM05D004051 ORTHO05D004480 2.4e-10 68.6 78 48.7
FAN10G1914 Fragaria x ananassa HOM05D004051 ORTHO05D004480 3.1e-10 68.2 86 44.2
AL6G35560 Arabidopsis lyrata HOM05D004051 ORTHO05D004480 4.1e-10 67.8 81 51.9
AT5G24165 Arabidopsis thaliana HOM05D004051 ORTHO05D004480 4.1e-10 67.8 76 51.3
BcaB07g29898 Brassica carinata HOM05D004051 ORTHO05D004480 5.3e-10 67.4 87 48.3
Thhalv10005218m.g Eutrema salsugineum HOM05D004051 ORTHO05D004480 7.0e-10 67.0 87 48.3
Hund11389 Selenicereus undatus HOM05D004051 ORTHO05D004480 7.0e-10 67.0 73 57.5
HPP92_020160 Vanilla planifolia HOM05D004051 ORTHO05D004480 1.2e-09 66.2 98 41.8
Ciclev10006352m.g Citrus clementina HOM05D004051 ORTHO05D004480 2.0e-09 65.5 75 50.7
MELO3C005880.2 Cucumis melo HOM05D004051 ORTHO05D004480 4.5e-09 64.3 76 51.3
EL10Ac3g05304 Beta vulgaris HOM05D004051 ORTHO05D004480 1.0e-08 63.2 78 48.7
ClCG01G000480 Citrullus lanatus HOM05D004051 ORTHO05D004480 1.0e-08 63.2 77 46.8
AUR62010843 Chenopodium quinoa HOM05D004051 ORTHO05D004480 1.7e-08 62.4 67 55.2
FAN03G1224 Fragaria x ananassa HOM05D004051 ORTHO05D004480 5.0e-08 60.8 69 47.8
THA.LOC104821369 Tarenaya hassleriana HOM05D004051 ORTHO05D004480 5.0e-08 60.8 84 42.9
HPP92_020177 Vanilla planifolia HOM05D004051 ORTHO05D004480 1.1e-07 59.7 95 40.0
Aa31LG11G3430 Aethionema arabicum HOM05D004051 ORTHO05D004480 2.5e-07 58.5 78 46.2
MBI06_g08462_MAGBIO Magnolia biondii HOM05D004051 ORTHO05D004480 2.5e-07 58.5 82 42.7
Ah.12g052570 Amaranthus hybridus HOM05D000749 ORTHO05D005685 3.2e-07 58.2 68 51.5
A06p35000 Brassica napus HOM05D004051 ORTHO05D004480 3.2e-07 58.2 88 42.0
C07p43550 Brassica napus HOM05D004051 ORTHO05D004480 3.2e-07 58.2 88 42.0
AagrBONN_evm.TU.Sc2ySwM_369.239 Anthoceros agrestis HOM05D004051 ORTHO05D004480 5.5e-07 57.4 73 46.6
Lj2A167G43 Lonicera japonica HOM05D004051 ORTHO05D004480 5.5e-07 57.4 47 66.0
AUR62006115 Chenopodium quinoa HOM05D004051 ORTHO05D004480 9.4e-07 56.6 28 89.3
BraA06t26423Z Brassica rapa HOM05D004051 ORTHO05D004480 1.6e-06 55.8 82 42.7
BolC7t44882H Brassica oleracea HOM05D004051 ORTHO05D004480 4.7e-06 54.3 82 41.5


User provided reference genes

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