Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp7g21690 Schrenkiella parvula HOM05D004803 ORTHO05D005653 1.8e-37 158.7 77 100.0
CARHR231140 Cardamine hirsuta HOM05D004803 ORTHO05D005653 1.6e-22 109.0 77 71.4
Aa31LG6G6980 Aethionema arabicum HOM05D004803 ORTHO05D005653 1.7e-19 99.0 64 70.3
PSO063G0965 Papaver somniferum HOM05D004803 ORTHO05D005653 2.7e-17 91.7 78 57.7
AT5G41685 Arabidopsis thaliana HOM05D004803 ORTHO05D005653 6.1e-17 90.5 70 60.0
Aa31LG9G390 Aethionema arabicum HOM05D004803 ORTHO05D005653 7.9e-17 90.1 48 83.3
BcaC08g44541 Brassica carinata HOM05D004803 ORTHO05D005653 3.0e-16 88.2 64 60.9
AL7G47670 Arabidopsis lyrata HOM05D004803 ORTHO05D005653 3.9e-16 87.8 65 61.5
Carub.0007s3380 Capsella rubella HOM05D004803 ORTHO05D005653 3.9e-16 87.8 69 58.0
Aa31LG2G1260 Aethionema arabicum HOM05D004803 ORTHO05D005653 1.1e-15 86.3 67 62.7
Thhalv10028124m.g Eutrema salsugineum HOM05D004803 ORTHO05D005653 1.1e-15 86.3 64 60.9
Nitab4.5_0010123g0030 Nicotiana tabacum HOM05D004803 ORTHO05D005653 1.5e-15 85.9 71 53.5
BcaB02g07882 Brassica carinata HOM05D004803 ORTHO05D005653 1.9e-15 85.5 64 59.4
Migut.B00847 Erythranthe guttata HOM05D004803 ORTHO05D005653 1.9e-15 85.5 69 53.6
Sp7g00380 Schrenkiella parvula HOM05D004803 ORTHO05D005653 1.9e-15 85.5 48 75.0
A04p14790 Brassica napus HOM05D004803 ORTHO05D005653 2.5e-15 85.1 61 59.0
BolC4t26468H Brassica oleracea HOM05D004803 ORTHO05D005653 2.5e-15 85.1 53 66.0
Hma1.2p1_0284F.1_g113820 Hydrangea macrophylla HOM05D004803 ORTHO05D005653 2.5e-15 85.1 69 55.1
BcaC02g08933 Brassica carinata HOM05D004803 ORTHO05D005653 3.3e-15 84.7 61 59.0
A04p18870 Brassica napus HOM05D004803 ORTHO05D005653 3.3e-15 84.7 61 59.0
C04p48720 Brassica napus HOM05D004803 ORTHO05D005653 3.3e-15 84.7 61 59.0
C04p48770 Brassica napus HOM05D004803 ORTHO05D005653 3.3e-15 84.7 61 59.0
C04p48830 Brassica napus HOM05D004803 ORTHO05D005653 3.3e-15 84.7 61 59.0
BolC4t26463H Brassica oleracea HOM05D004803 ORTHO05D005653 3.3e-15 84.7 61 59.0
ECA240G2554 Erigeron canadensis HOM05D004803 ORTHO05D005653 3.3e-15 84.7 68 52.9
Manes.12G104200 Manihot esculenta HOM05D004803 ORTHO05D005653 3.3e-15 84.7 69 58.0
A04p14850 Brassica napus HOM05D004803 ORTHO05D005653 4.3e-15 84.3 48 72.9
BraA04t17117Z Brassica rapa HOM05D004803 ORTHO05D005653 4.3e-15 84.3 48 72.9
BraA04t17123Z Brassica rapa HOM05D004803 ORTHO05D005653 4.3e-15 84.3 48 72.9
CARHR272970 Cardamine hirsuta HOM05D004803 ORTHO05D005653 4.3e-15 84.3 65 56.9
HanXRQChr14g0437441 Helianthus annuus HOM05D004803 ORTHO05D005653 4.3e-15 84.3 67 50.7
Nitab4.5_0000413g0050 Nicotiana tabacum HOM05D004803 ORTHO05D005653 4.3e-15 84.3 69 53.6
Nitab4.5_0005014g0030 Nicotiana tabacum HOM05D004803 ORTHO05D005653 4.3e-15 84.3 69 53.6
SalBow5G1850 Salvia bowleyana HOM05D004803 ORTHO05D005653 4.3e-15 84.3 69 55.1
CAN.G54.3 Capsicum annuum HOM05D004803 ORTHO05D005653 5.7e-15 84.0 69 53.6
FvH4_4g06260 Fragaria vesca HOM05D004803 ORTHO05D005653 7.4e-15 83.6 66 56.1
FAN12G1038 Fragaria x ananassa HOM05D004803 ORTHO05D005653 7.4e-15 83.6 66 56.1
THA.LOC104823604 Tarenaya hassleriana HOM05D004803 ORTHO05D005653 7.4e-15 83.6 48 70.8
Zm00001eb358730 Zea mays HOM05D004803 ORTHO05D005653 7.4e-15 83.6 69 52.2
BcaB07g31446 Brassica carinata HOM05D004803 ORTHO05D005653 9.7e-15 83.2 47 74.5
CANSAT80G0011 Cannabis sativa HOM05D004803 ORTHO05D005653 9.7e-15 83.2 70 52.9
Gohir.A13G115000 Gossypium hirsutum HOM05D004803 ORTHO05D005653 9.7e-15 83.2 69 55.1
TAR636G2654 Trochodendron aralioides HOM05D004803 ORTHO05D005653 9.7e-15 83.2 69 53.6
COL.COLO4_24021 Corchorus olitorius HOM05D004803 ORTHO05D005653 1.3e-14 82.8 69 53.6
Duzib106G0817 Durio zibethinus HOM05D004803 ORTHO05D005653 1.3e-14 82.8 70 54.3
Thhalv10023788m.g Eutrema salsugineum HOM05D004803 ORTHO05D005653 1.3e-14 82.8 47 72.3
FAN22G0315 Fragaria x ananassa HOM05D004803 ORTHO05D005653 1.3e-14 82.8 66 56.1
Gohir.D13G117900 Gossypium hirsutum HOM05D004803 ORTHO05D005653 1.3e-14 82.8 69 55.1
Gorai.013G132400 Gossypium raimondii HOM05D004803 ORTHO05D005653 1.3e-14 82.8 69 55.1
Solyc07g015970.3 Solanum lycopersicum HOM05D004803 ORTHO05D005653 1.3e-14 82.8 69 52.2
Cpa.g.sc116.72 Carica papaya HOM05D004803 ORTHO05D005653 1.6e-14 82.4 64 53.1
THA.LOC104817698 Tarenaya hassleriana HOM05D004803 ORTHO05D005653 1.6e-14 82.4 47 72.3
TWI14G1226 Tripterygium wilfordii HOM05D004803 ORTHO05D005653 1.6e-14 82.4 71 53.5
BcaB06g27645 Brassica carinata HOM05D004803 ORTHO05D005653 2.2e-14 82.0 48 70.8
Duzib128G1472 Durio zibethinus HOM05D004803 ORTHO05D005653 2.2e-14 82.0 49 69.4
CARHR046710 Cardamine hirsuta HOM05D004803 ORTHO05D005653 2.8e-14 81.6 47 70.2
RcHm_v2.0_Chr4g0397981 Rosa chinensis HOM05D004803 ORTHO05D005653 2.8e-14 81.6 66 54.5
vmacro20779 Vaccinium macrocarpon HOM05D004803 ORTHO05D005653 2.8e-14 81.6 77 53.2
FAN17G0329 Fragaria x ananassa HOM05D004803 ORTHO05D005653 3.7e-14 81.3 66 53.0
Manes.13G122700 Manihot esculenta HOM05D004803 ORTHO05D005653 3.7e-14 81.3 69 55.1
Peaxi162Scf00320g00053 Petunia axillaris HOM05D004803 ORTHO05D005653 3.7e-14 81.3 69 50.7
Sopen07g005800 Solanum pennellii HOM05D004803 ORTHO05D005653 3.7e-14 81.3 69 52.2
Sopen07g005820 Solanum pennellii HOM05D004803 ORTHO05D005653 3.7e-14 81.3 69 52.2
Nitab4.5_0005411g0060 Nicotiana tabacum HOM05D004803 ORTHO05D005653 4.8e-14 80.9 69 50.7
PGR083G2338 Punica granatum HOM05D004803 ORTHO05D005653 4.8e-14 80.9 71 52.1
TWI39G0014 Tripterygium wilfordii HOM05D004803 ORTHO05D005653 4.8e-14 80.9 71 50.7
MD13G1234800 Malus domestica HOM05D004803 ORTHO05D005653 6.3e-14 80.5 70 54.3
Nitab4.5_0004188g0060 Nicotiana tabacum HOM05D004803 ORTHO05D005653 6.3e-14 80.5 69 50.7
BcaB07g31518 Brassica carinata HOM05D004803 ORTHO05D005653 8.2e-14 80.1 47 72.3
CSS0040541 Camellia sinensis var. sinensis HOM05D004803 ORTHO05D005653 8.2e-14 80.1 69 52.2
Carub.0002s0057 Capsella rubella HOM05D004803 ORTHO05D005653 8.2e-14 80.1 46 71.7
FAN07G1450 Fragaria x ananassa HOM05D004803 ORTHO05D005653 8.2e-14 80.1 66 53.0
Lalb_Chr16g0390871 Lupinus albus HOM05D004803 ORTHO05D005653 1.1e-13 79.7 70 54.3
Sed0007901 Sechium edule HOM05D004803 ORTHO05D005653 1.1e-13 79.7 69 52.2
Sc12g0011260 Simmondsia chinensis HOM05D004803 ORTHO05D005653 1.1e-13 79.7 54 61.1
Ca_17414_v3 Cicer arietinum L. HOM05D004803 ORTHO05D005653 1.4e-13 79.3 70 52.9
ClCG06G014040 Citrullus lanatus HOM05D004803 ORTHO05D005653 1.4e-13 79.3 69 52.2
Cc00_g00470 Coffea canephora HOM05D004803 ORTHO05D005653 1.4e-13 79.3 69 55.1
Os01g0732000 Oryza sativa ssp. japonica HOM05D004803 ORTHO05D005653 1.4e-13 79.3 71 49.3
Thecc.07G084900 Theobroma cacao HOM05D004803 ORTHO05D005653 1.4e-13 79.3 70 52.9
AL2G10780 Arabidopsis lyrata HOM05D004803 ORTHO05D005653 1.8e-13 79.0 47 68.1
Ciclev10003057m.g Citrus clementina HOM05D004803 ORTHO05D005653 1.8e-13 79.0 69 49.3
Os01g0626300 Oryza sativa ssp. japonica HOM05D004803 ORTHO05D005653 1.8e-13 79.0 64 51.6
Psat7g021680 Pisum sativum HOM05D004803 ORTHO05D005653 1.8e-13 79.0 69 50.7
Prupe.1G065700 Prunus persica HOM05D004803 ORTHO05D005653 1.8e-13 79.0 66 53.0
Atru.chr7.977 Acer truncatum HOM05D004803 ORTHO05D005653 2.4e-13 78.6 69 52.2
PGSC0003DMG400021021 Solanum tuberosum HOM05D004803 ORTHO05D005653 2.4e-13 78.6 69 49.3
AUR62001322 Chenopodium quinoa HOM05D004803 ORTHO05D005653 3.1e-13 78.2 62 56.5
MD16G1239600 Malus domestica HOM05D004803 ORTHO05D005653 3.1e-13 78.2 70 54.3
Solyc05g047390.1 Solanum lycopersicum HOM05D004803 ORTHO05D005653 3.1e-13 78.2 74 51.4
Sopen05g027700 Solanum pennellii HOM05D004803 ORTHO05D005653 3.1e-13 78.2 74 51.4
AT1G64220 Arabidopsis thaliana HOM05D004803 ORTHO05D005653 4.1e-13 77.8 47 66.0
CiPaw.15G155100 Carya illinoinensis HOM05D004803 ORTHO05D005653 4.1e-13 77.8 64 54.7
AUR62025705 Chenopodium quinoa HOM05D004803 ORTHO05D005653 4.1e-13 77.8 62 54.8
Glyma.05G221400 Glycine max HOM05D004803 ORTHO05D005653 4.1e-13 77.8 69 49.3
Lsat_1_v5_gn_7_59621 Lactuca sativa HOM05D004803 ORTHO05D005653 4.1e-13 77.8 69 49.3
Lsat_1_v5_gn_7_59641 Lactuca sativa HOM05D004803 ORTHO05D005653 4.1e-13 77.8 69 49.3
Glyma.08G027900 Glycine max HOM05D004803 ORTHO05D005653 5.3e-13 77.4 69 49.3
Ciclev10023194m.g Citrus clementina HOM05D004803 ORTHO05D005653 6.9e-13 77.0 44 68.2
Hma1.2p1_0418F.1_g149310 Hydrangea macrophylla HOM05D004803 ORTHO05D005653 6.9e-13 77.0 67 52.2
MBI13_g31565_MAGBIO Magnolia biondii HOM05D004803 ORTHO05D005653 9.1e-13 76.6 69 47.8
Phvul.002G303100 Phaseolus vulgaris HOM05D004803 ORTHO05D005653 9.1e-13 76.6 69 47.8
TPR.G25472 Trifolium pratense HOM05D004803 ORTHO05D005653 9.1e-13 76.6 64 51.6
DCAR_019792 Daucus carota HOM05D004803 ORTHO05D005653 1.2e-12 76.3 44 72.7
PGSC0003DMG402013687 Solanum tuberosum HOM05D004803 ORTHO05D005653 1.2e-12 76.3 74 50.0
unitig_899.g15187 Utricularia gibba HOM05D004803 ORTHO05D005653 1.2e-12 76.3 70 48.6
Aqoxy7G02691 Aquilegia oxysepala HOM05D004803 ORTHO05D005653 1.5e-12 75.9 77 49.4
Pp3c17_18760 Physcomitrium patens HOM05D004803 ORTHO05D005653 1.5e-12 75.9 47 66.0
Ah.08g217890 Amaranthus hybridus HOM05D004803 ORTHO05D005653 2.0e-12 75.5 62 51.6
Medtr3g462060 Medicago truncatula HOM05D004803 ORTHO05D005653 2.0e-12 75.5 44 68.2
Cfa020735 Carpinus fangiana HOM05D004803 ORTHO05D005653 2.6e-12 75.1 70 48.6
MELO3C019213.2 Cucumis melo HOM05D004803 ORTHO05D005653 2.6e-12 75.1 47 66.0
CsaV3_2G035410 Cucumis sativus L. HOM05D004803 ORTHO05D005653 2.6e-12 75.1 46 67.4
QL11p009265 Quercus lobata HOM05D004803 ORTHO05D005653 2.6e-12 75.1 43 72.1
Medtr2g067370 Medicago truncatula HOM05D004803 ORTHO05D005653 3.4e-12 74.7 44 65.9
Medtr3g055500 Medicago truncatula HOM05D004803 ORTHO05D005653 3.4e-12 74.7 62 51.6
Lsat_1_v5_gn_7_59661 Lactuca sativa HOM05D004803 ORTHO05D005653 4.5e-12 74.3 69 47.8
Pp3c14_20040 Physcomitrium patens HOM05D004803 ORTHO05D005653 5.9e-12 73.9 69 49.3
HPP92_006365 Vanilla planifolia HOM05D004803 ORTHO05D005653 5.9e-12 73.9 71 47.9
A09p14890 Brassica napus HOM05D004803 ORTHO05D005653 7.7e-12 73.6 47 63.8
BraA09t37134Z Brassica rapa HOM05D004803 ORTHO05D005653 7.7e-12 73.6 47 63.8
Potri.018G146602 Populus trichocarpa HOM05D004803 ORTHO05D005653 7.7e-12 73.6 67 43.3
C09p18010 Brassica napus HOM05D004803 ORTHO05D005653 1.0e-11 73.2 47 63.8
BcaC04g22540 Brassica carinata HOM05D004803 ORTHO05D005653 1.3e-11 72.8 47 63.8
BcaC04g22545 Brassica carinata HOM05D004803 ORTHO05D005653 1.3e-11 72.8 47 63.8
BcaC04g22640 Brassica carinata HOM05D004803 ORTHO05D005653 1.3e-11 72.8 47 63.8
BcaC04g22642 Brassica carinata HOM05D004803 ORTHO05D005653 1.3e-11 72.8 47 63.8
BcaC04g22643 Brassica carinata HOM05D004803 ORTHO05D005653 1.3e-11 72.8 47 63.8
BolC9t54698H Brassica oleracea HOM05D004803 ORTHO05D005653 1.3e-11 72.8 47 63.8
CBR_g29720 Chara braunii HOM05D004803 ORTHO05D005653 1.7e-11 72.4 45 71.1
Potri.006G077500 Populus trichocarpa HOM05D004803 ORTHO05D005653 1.7e-11 72.4 67 46.3
Nn8g40644 Nelumbo nucifera HOM05D004803 ORTHO05D005653 2.2e-11 72.0 68 48.5
BolC9t54609H Brassica oleracea HOM05D004803 ORTHO05D005653 2.9e-11 71.6 47 61.7
MD15G1094200 Malus domestica HOM05D004803 ORTHO05D005653 3.8e-11 71.2 70 48.6
Medtr3g061970 Medicago truncatula HOM05D004803 ORTHO05D005653 3.8e-11 71.2 63 49.2
MBI11_g11974_MAGBIO Magnolia biondii HOM05D004803 ORTHO05D005653 6.5e-11 70.5 44 61.4
Potri.018G145502 Populus trichocarpa HOM05D004803 ORTHO05D005653 8.5e-11 70.1 67 40.3
CBR_g29719 Chara braunii HOM05D004803 ORTHO05D005653 1.9e-10 68.9 43 67.4
Os05g0583400 Oryza sativa ssp. japonica HOM05D004803 ORTHO05D005653 3.2e-10 68.2 44 61.4
C04p48860 Brassica napus HOM05D004803 ORTHO05D005653 4.2e-10 67.8 48 60.4
Eucgr.H00014 Eucalyptus grandis HOM05D004803 ORTHO05D005653 7.2e-10 67.0 53 50.9
Nn8g41089 Nelumbo nucifera HOM05D004803 ORTHO05D005653 1.2e-09 66.2 58 48.3
SMO167G0035 Selaginella moellendorffii HOM05D004803 ORTHO05D005653 1.0e-08 63.2 46 50.0
Mapoly0024s0138 Marchantia polymorpha HOM05D004803 ORTHO05D005653 6.7e-08 60.5 44 54.5
MD12G1085900 Malus domestica HOM05D004803 ORTHO05D005653 2.6e-07 58.5 60 45.0
MD06G1130200 Malus domestica HOM05D004803 ORTHO05D005653 4.4e-07 57.8 60 46.7
Nn8g40643 Nelumbo nucifera HOM05D004803 ORTHO05D005653 9.7e-07 56.6 35 65.7
Lj4g0006469 Lotus japonicus HOM05D004803 ORTHO05D005653 6.3e-06 53.9 59 42.4


User provided reference genes

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