Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp7g21590 Schrenkiella parvula HOM05D003744 ORTHO05D004327 5.3e-237 823.9 405 100.0
Thhalv10025345m.g Eutrema salsugineum HOM05D003744 ORTHO05D004327 3.8e-219 764.6 407 93.1
C01p18750 Brassica napus HOM05D003744 ORTHO05D004327 1.6e-214 749.2 407 91.9
BcaC09g50959 Brassica carinata HOM05D003744 ORTHO05D004327 1.8e-213 745.7 407 91.4
BcaNung01074 Brassica carinata HOM05D003744 ORTHO05D004327 6.9e-213 743.8 405 91.4
BolC1t01805H Brassica oleracea HOM05D003744 ORTHO05D004327 2.5e-210 735.3 423 87.9
A01p14960 Brassica napus HOM05D003744 ORTHO05D004327 4.4e-207 724.5 412 89.3
BraA01t01437Z Brassica rapa HOM05D003744 ORTHO05D004327 1.8e-205 719.2 427 86.7
Carub.0007s1748 Capsella rubella HOM05D003744 ORTHO05D004327 6.5e-203 710.7 408 88.5
AL7G29700 Arabidopsis lyrata HOM05D003744 ORTHO05D004327 7.2e-202 707.2 407 88.5
AT4G23660 Arabidopsis thaliana HOM05D003744 ORTHO05D004327 1.8e-200 702.6 407 86.5
BcaNung03181 Brassica carinata HOM05D003744 ORTHO05D004327 2.0e-188 662.5 407 85.3
A03p54630 Brassica napus HOM05D003744 ORTHO05D004327 4.2e-186 654.8 404 83.2
BcaNung03441 Brassica carinata HOM05D003744 ORTHO05D004327 1.2e-185 653.3 406 83.5
C07p52950 Brassica napus HOM05D003744 ORTHO05D004327 1.2e-185 653.3 406 83.5
Aa31LG6G6900 Aethionema arabicum HOM05D003744 ORTHO05D004327 1.7e-182 642.9 408 78.9
BolC7t45794H Brassica oleracea HOM05D003744 ORTHO05D004327 1.8e-181 639.4 422 79.9
BraA03t14530Z Brassica rapa HOM05D003744 ORTHO05D004327 1.3e-174 616.7 387 82.9
THA.LOC104814817 Tarenaya hassleriana HOM05D003744 ORTHO05D004327 1.6e-172 609.8 409 75.3
Aa31LG9G10990 Aethionema arabicum HOM05D003744 ORTHO05D004327 8.6e-163 577.4 394 71.8
Thecc.02G161400 Theobroma cacao HOM05D003744 ORTHO05D004327 8.3e-150 534.3 409 66.5
COL.COLO4_10100 Corchorus olitorius HOM05D003744 ORTHO05D004327 3.2e-149 532.3 414 65.9
MD15G1355200 Malus domestica HOM05D003744 ORTHO05D004327 3.5e-148 528.9 402 68.2
VMungo1383G1042 Vigna mungo HOM05D003744 ORTHO05D004327 1.7e-147 526.6 416 66.3
Prupe.4G276200 Prunus persica HOM05D003744 ORTHO05D004327 3.9e-147 525.4 410 67.3
Ca_07785_v3 Cicer arietinum L. HOM05D003744 ORTHO05D004327 1.5e-146 523.5 400 68.0
Prupe.1G346400 Prunus persica HOM05D003744 ORTHO05D004327 2.5e-146 522.7 398 67.3
Glyma.18G216400 Glycine max HOM05D003744 ORTHO05D004327 1.2e-145 520.4 403 66.3
Medtr7g073970 Medicago truncatula HOM05D003744 ORTHO05D004327 1.2e-145 520.4 406 65.5
Phvul.008G080300 Phaseolus vulgaris HOM05D003744 ORTHO05D004327 1.2e-145 520.4 411 66.4
Lalb_Chr12g0205351 Lupinus albus HOM05D003744 ORTHO05D004327 2.8e-145 519.2 407 66.8
Cfa008732 Carpinus fangiana HOM05D003744 ORTHO05D004327 6.2e-145 518.1 404 65.3
Lj1g0013770 Lotus japonicus HOM05D003744 ORTHO05D004327 1.4e-144 516.9 327 77.4
Manes.01G040712 Manihot esculenta HOM05D003744 ORTHO05D004327 1.4e-144 516.9 409 66.0
PSO384G3023 Papaver somniferum HOM05D003744 ORTHO05D004327 1.8e-144 516.5 406 65.8
Sc23g0003470 Simmondsia chinensis HOM05D003744 ORTHO05D004327 5.8e-143 511.5 406 64.0
Gohir.A12G134500 Gossypium hirsutum HOM05D003744 ORTHO05D004327 1.7e-142 510.0 410 64.4
QL03p058539 Quercus lobata HOM05D003744 ORTHO05D004327 2.2e-142 509.6 392 66.3
Gorai.008G149600 Gossypium raimondii HOM05D003744 ORTHO05D004327 1.1e-141 507.3 349 71.6
GSVIVG01012037001 Vitis vinifera HOM05D003744 ORTHO05D004327 1.4e-141 506.9 338 74.3
Ciclev10031746m.g Citrus clementina HOM05D003744 ORTHO05D004327 4.1e-141 505.4 409 65.5
CiPaw.05G168300 Carya illinoinensis HOM05D003744 ORTHO05D004327 9.2e-141 504.2 411 64.0
PGSC0003DMG400024499 Solanum tuberosum HOM05D003744 ORTHO05D004327 1.2e-140 503.8 315 77.8
arahy.Tifrunner.gnm1.ann1.G2KDP7 Arachis hypogaea HOM05D003744 ORTHO05D004327 1.6e-140 503.4 408 64.5
Aqoxy1G00571 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 3.5e-140 502.3 421 63.2
arahy.Tifrunner.gnm1.ann1.DDPE54 Arachis hypogaea HOM05D003744 ORTHO05D004327 3.5e-140 502.3 405 64.2
Gohir.D12G138100 Gossypium hirsutum HOM05D003744 ORTHO05D004327 3.5e-140 502.3 406 63.8
Sabra05G0077500 Salix brachista HOM05D003744 ORTHO05D004327 7.8e-140 501.1 308 78.2
MSTRG.11446 Avicennia marina HOM05D003744 ORTHO05D004327 1.3e-139 500.4 404 65.3
FvH4_4g36840 Fragaria vesca HOM05D003744 ORTHO05D004327 1.3e-139 500.4 323 76.2
RcHm_v2.0_Chr5g0044851 Rosa chinensis HOM05D003744 ORTHO05D004327 1.7e-139 500.0 402 65.2
CANSAT78G0298 Cannabis sativa HOM05D003744 ORTHO05D004327 2.3e-139 499.6 371 67.1
Cc04_g13930 Coffea canephora HOM05D003744 ORTHO05D004327 3.0e-139 499.2 314 77.1
PGR044G0777 Punica granatum HOM05D003744 ORTHO05D004327 1.1e-138 497.3 321 75.7
Sed0024199 Sechium edule HOM05D003744 ORTHO05D004327 1.5e-138 496.9 349 69.6
arahy.Tifrunner.gnm1.ann1.686LQU Arachis hypogaea HOM05D003744 ORTHO05D004327 2.5e-138 496.1 406 63.5
RcHm_v2.0_Chr4g0446591 Rosa chinensis HOM05D003744 ORTHO05D004327 3.3e-138 495.7 401 65.6
CSS0044819 Camellia sinensis var. sinensis HOM05D003744 ORTHO05D004327 4.3e-138 495.4 411 63.5
Atru.chr11.479 Acer truncatum HOM05D003744 ORTHO05D004327 9.6e-138 494.2 410 64.1
QL03p042814 Quercus lobata HOM05D003744 ORTHO05D004327 2.1e-137 493.0 397 65.0
Migut.I00018 Erythranthe guttata HOM05D003744 ORTHO05D004327 2.8e-137 492.7 405 63.0
Nn2g14543 Nelumbo nucifera HOM05D003744 ORTHO05D004327 4.7e-137 491.9 406 62.8
EL10Ac7g17368 Beta vulgaris HOM05D003744 ORTHO05D004327 1.8e-136 490.0 406 62.3
CsaV3_3G031430 Cucumis sativus L. HOM05D003744 ORTHO05D004327 1.8e-136 490.0 332 71.7
Dinv17603 Davidia involucrata HOM05D003744 ORTHO05D004327 4.0e-136 488.8 400 65.5
Haze_11743 Corylus avellana HOM05D003744 ORTHO05D004327 1.2e-135 487.3 385 65.5
MELO3C024026.2 Cucumis melo HOM05D003744 ORTHO05D004327 1.2e-135 487.3 332 71.4
HanXRQChr11g0332851 Helianthus annuus HOM05D003744 ORTHO05D004327 2.6e-135 486.1 380 65.3
Os08g0322600 Oryza sativa ssp. japonica HOM05D003744 ORTHO05D004327 9.9e-135 484.2 318 72.3
CARHR231030 Cardamine hirsuta HOM05D003744 ORTHO05D004327 7.1e-133 478.0 297 82.8
ECA233G3748 Erigeron canadensis HOM05D003744 ORTHO05D004327 1.6e-132 476.9 291 79.4
Prupe.1G346500 Prunus persica HOM05D003744 ORTHO05D004327 1.6e-132 476.9 317 72.9
Duzib132G0191 Durio zibethinus HOM05D003744 ORTHO05D004327 1.7e-131 473.4 390 62.8
AUR62036656 Chenopodium quinoa HOM05D003744 ORTHO05D004327 6.6e-131 471.5 398 62.8
Solyc03g114300.4 Solanum lycopersicum HOM05D003744 ORTHO05D004327 3.3e-130 469.2 383 64.2
Lsat_1_v5_gn_6_17921 Lactuca sativa HOM05D003744 ORTHO05D004327 2.4e-128 463.0 373 64.6
Rhsim09G0044700 Rhododendron simsii HOM05D003744 ORTHO05D004327 2.0e-127 459.9 365 65.2
RhsimUnG0157000 Rhododendron simsii HOM05D003744 ORTHO05D004327 9.9e-127 457.6 365 65.2
vmacro07295 Vaccinium macrocarpon HOM05D003744 ORTHO05D004327 6.4e-126 454.9 418 61.2
Potri.005G093600 Populus trichocarpa HOM05D003744 ORTHO05D004327 1.4e-125 453.8 308 71.1
MD11G1112600 Malus domestica HOM05D003744 ORTHO05D004327 4.6e-124 448.7 328 66.5
ClCG10G011930 Citrullus lanatus HOM05D003744 ORTHO05D004327 1.3e-123 447.2 332 67.8
SMO164G0212 Selaginella moellendorffii HOM05D003744 ORTHO05D004327 3.9e-123 445.7 292 72.3
ATR1100G008 Amborella trichopoda HOM05D003744 ORTHO05D004327 1.9e-122 443.4 272 76.1
AagrBONN_evm.TU.Sc2ySwM_340.154 Anthoceros agrestis HOM05D003744 ORTHO05D004327 3.3e-122 442.6 336 62.8
SalBow1G2569 Salvia bowleyana HOM05D003744 ORTHO05D004327 7.4e-122 441.4 414 58.2
Mapoly0100s0056 Marchantia polymorpha HOM05D003744 ORTHO05D004327 3.7e-121 439.1 324 64.5
CAN.G781.16 Capsicum annuum HOM05D003744 ORTHO05D004327 9.0e-120 434.5 256 82.4
TWI53G1336 Tripterygium wilfordii HOM05D003744 ORTHO05D004327 9.9e-119 431.0 357 65.3
Zm00001eb190740 Zea mays HOM05D003744 ORTHO05D004327 1.7e-118 430.3 335 62.7
BcaB03g12405 Brassica carinata HOM05D003744 ORTHO05D004327 6.4e-118 428.3 258 85.3
Aqoxy5G02199 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 1.9e-117 426.8 375 62.7
Aqoxy94s001 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 1.9e-117 426.8 375 62.7
Aqoxy94s003 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 1.9e-117 426.8 375 62.7
Thecc.02G176000 Theobroma cacao HOM05D003744 ORTHO05D004327 1.2e-116 424.1 325 64.6
MD11G1112700 Malus domestica HOM05D003744 ORTHO05D004327 1.0e-115 421.0 310 66.5
Lj8A264T57 Lonicera japonica HOM05D003744 ORTHO05D004327 1.3e-115 420.6 369 60.4
Os08g0388900 Oryza sativa ssp. japonica HOM05D003744 ORTHO05D004327 5.6e-114 415.2 291 65.3
Ah.15g093700 Amaranthus hybridus HOM05D003744 ORTHO05D004327 7.4e-114 414.8 395 56.2
Peaxi162Scf00017g02835 Petunia axillaris HOM05D003744 ORTHO05D004327 1.2e-111 407.5 424 55.7
DCAR_026464 Daucus carota HOM05D003744 ORTHO05D004327 2.9e-110 402.9 241 79.7
Duzib132G0180 Durio zibethinus HOM05D003744 ORTHO05D004327 8.4e-110 401.4 404 53.0
Nitab4.5_0000852g0010 Nicotiana tabacum HOM05D003744 ORTHO05D004327 1.2e-108 397.5 399 58.6
TAR374G0876 Trochodendron aralioides HOM05D003744 ORTHO05D004327 2.7e-108 396.4 417 55.6
DCAR_029703 Daucus carota HOM05D003744 ORTHO05D004327 3.5e-108 396.0 241 78.4
PSO170G1927 Papaver somniferum HOM05D003744 ORTHO05D004327 3.0e-107 392.9 314 61.5
AUR62034614 Chenopodium quinoa HOM05D003744 ORTHO05D004327 3.9e-107 392.5 236 80.5
arahy.Tifrunner.gnm1.ann1.KM1SID Arachis hypogaea HOM05D003744 ORTHO05D004327 5.1e-107 392.1 258 76.0
unitig_52.g17488 Utricularia gibba HOM05D003744 ORTHO05D004327 1.5e-106 390.6 305 67.2
BcaC01g00486 Brassica carinata HOM05D003744 ORTHO05D004327 1.9e-106 390.2 363 62.3
Gohir.A12G137600 Gossypium hirsutum HOM05D003744 ORTHO05D004327 4.8e-105 385.6 326 59.2
Gorai.008G153000 Gossypium raimondii HOM05D003744 ORTHO05D004327 4.8e-105 385.6 326 59.5
arahy.Tifrunner.gnm1.ann1.Z9T1G4 Arachis hypogaea HOM05D003744 ORTHO05D004327 2.4e-104 383.3 408 53.7
Gohir.D12G141600 Gossypium hirsutum HOM05D003744 ORTHO05D004327 3.4e-103 379.4 326 58.6
SGA_v2.0_scaffold90G27943 Striga asiatica HOM05D003744 ORTHO05D004327 3.4e-103 379.4 332 61.7
TWI53G1840 Tripterygium wilfordii HOM05D003744 ORTHO05D004327 1.1e-101 374.4 408 52.7
Gohir.A12G137650 Gossypium hirsutum HOM05D003744 ORTHO05D004327 2.1e-100 370.2 326 58.3
Pp3c17_13460 Physcomitrium patens HOM05D003744 ORTHO05D004327 4.8e-97 359.0 314 58.0
Potri.005G093700 Populus trichocarpa HOM05D003744 ORTHO05D004327 3.1e-96 356.3 211 81.0
Nitab4.5_0005862g0050 Nicotiana tabacum HOM05D003744 ORTHO05D004327 4.1e-96 355.9 439 49.4
CDE05G3331 Ceratophyllum demersum HOM05D003744 ORTHO05D004327 4.5e-95 352.4 273 64.1
QL08p053649 Quercus lobata HOM05D003744 ORTHO05D004327 1.0e-94 351.3 212 79.7
Sed0012155 Sechium edule HOM05D003744 ORTHO05D004327 2.7e-92 343.2 375 51.7
SalBow1G6149 Salvia bowleyana HOM05D003744 ORTHO05D004327 4.7e-92 342.4 391 50.9
Cre06.g291800 Chlamydomonas reinhardtii HOM05D003744 ORTHO05D004327 6.1e-92 342.0 282 61.0
RcHm_v2.0_Chr5g0044921 Rosa chinensis HOM05D003744 ORTHO05D004327 3.0e-91 339.7 211 77.7
Cc04_g13880 Coffea canephora HOM05D003744 ORTHO05D004327 5.7e-90 335.5 352 50.9
MCO12G284 Micromonas commoda HOM05D003744 ORTHO05D004327 2.0e-87 327.0 301 56.1
Lj2g0000279 Lotus japonicus HOM05D003744 ORTHO05D004327 2.1e-84 317.0 217 71.9
A08p21950 Brassica napus HOM05D003744 ORTHO05D004327 8.0e-84 315.1 199 79.9
Medtr3g111660 Medicago truncatula HOM05D003744 ORTHO05D004327 8.2e-81 305.1 359 49.3
Os08g0389300 Oryza sativa ssp. japonica HOM05D003744 ORTHO05D004327 9.4e-77 291.6 200 67.0
CBR_g5669 Chara braunii HOM05D003744 ORTHO05D004327 2.1e-76 290.4 210 67.6
Eucgr.G01369 Eucalyptus grandis HOM05D003744 ORTHO05D004327 6.3e-73 278.9 327 51.1
TPR.G35100 Trifolium pratense HOM05D003744 ORTHO05D004327 6.3e-73 278.9 158 81.0
C03p80510 Brassica napus HOM05D003744 ORTHO05D004327 4.1e-72 276.2 237 67.1
TAR374G1448 Trochodendron aralioides HOM05D003744 ORTHO05D004327 1.3e-70 271.2 274 55.8
arahy.Tifrunner.gnm1.ann1.1L5CCL Arachis hypogaea HOM05D003744 ORTHO05D004327 3.2e-69 266.5 169 75.1
PRCOL_00006084 Prasinoderma coloniale HOM05D003744 ORTHO05D004327 9.4e-69 265.0 280 51.8
Sopen03g033400 Solanum pennellii HOM05D003744 ORTHO05D004327 4.7e-68 262.7 255 58.8
TAR374G1156 Trochodendron aralioides HOM05D003744 ORTHO05D004327 6.1e-68 262.3 180 73.3
FAN17G0528 Fragaria x ananassa HOM05D003744 ORTHO05D004327 5.2e-67 259.2 279 51.6
Eucgr.H03234 Eucalyptus grandis HOM05D003744 ORTHO05D004327 1.4e-64 251.1 154 74.0
Haze_26705 Corylus avellana HOM05D003744 ORTHO05D004327 1.1e-61 241.5 282 42.9
SEGI_31034 Sequoiadendron giganteum HOM05D003744 ORTHO05D004327 5.5e-61 239.2 154 72.1
Cc00_g30150 Coffea canephora HOM05D003744 ORTHO05D004327 3.0e-59 233.4 170 64.1
TPR.G24330 Trifolium pratense HOM05D003744 ORTHO05D004327 1.4e-56 224.6 261 51.3
Hund23867 Selenicereus undatus HOM05D003744 ORTHO05D004327 7.8e-55 218.8 149 73.2
FAN07G0518 Fragaria x ananassa HOM05D003744 ORTHO05D004327 1.0e-54 218.4 170 67.6
SHI31057 Sapria himalayana HOM05D000482 ORTHO05D000349 2.9e-54 216.9 239 49.0
SEGI_19125 Sequoiadendron giganteum HOM05D003744 ORTHO05D004327 7.3e-53 212.2 148 68.9
Oeu024760.1 Olea europaea HOM05D003744 ORTHO05D004327 3.6e-52 209.9 162 64.2
SEGI_29356 Sequoiadendron giganteum HOM05D003744 ORTHO05D004327 3.6e-52 209.9 151 64.9
Lj1g0011441 Lotus japonicus HOM05D003744 ORTHO05D004327 6.8e-51 205.7 133 72.2
Cfa021958 Carpinus fangiana HOM05D003744 ORTHO05D004327 2.9e-49 200.3 274 45.3
Cc04_g15800 Coffea canephora HOM05D003744 ORTHO05D004327 3.6e-44 183.3 173 53.2
HPP92_014779 Vanilla planifolia HOM05D003744 ORTHO05D004327 8.0e-44 182.2 173 52.6
Gohir.A12G137450 Gossypium hirsutum HOM05D003744 ORTHO05D004327 9.2e-40 168.7 177 49.7
Cpa.g.sc5.31 Carica papaya HOM05D003744 ORTHO05D004327 1.2e-39 168.3 195 51.3
CBR_g4211 Chara braunii HOM05D003744 ORTHO05D004327 1.1e-37 161.8 119 65.5
BolC3t20296H Brassica oleracea HOM05D003744 ORTHO05D004327 2.8e-36 157.1 118 69.5
FAN12G4043 Fragaria x ananassa HOM05D003744 ORTHO05D004327 3.6e-36 156.8 113 69.0
MD16G1001300 Malus domestica HOM05D003744 ORTHO05D004327 1.1e-35 155.2 124 66.1
QL08p053645 Quercus lobata HOM05D003744 ORTHO05D004327 1.2e-34 151.8 186 47.3
Cc00_g32230 Coffea canephora HOM05D003744 ORTHO05D004327 5.4e-24 116.3 117 47.0
TAR374G0013 Trochodendron aralioides HOM05D003744 ORTHO05D004327 9.2e-24 115.5 81 67.9
SEGI_11824 Sequoiadendron giganteum HOM05D003744 ORTHO05D004327 3.5e-23 113.6 70 81.4
Cc04_g13890 Coffea canephora HOM05D003744 ORTHO05D004327 1.7e-22 111.3 102 53.9
Lalb_Chr12g0204281 Lupinus albus HOM05D003744 ORTHO05D004327 2.3e-22 110.9 72 75.0
Lalb_Chr12g0204291 Lupinus albus HOM05D003744 ORTHO05D004327 5.3e-19 99.8 164 40.9
Glyma.09G272651 Glycine max HOM05D003744 ORTHO05D004327 6.9e-19 99.4 182 39.6
RcHm_v2.0_Chr5g0044931 Rosa chinensis HOM05D003744 ORTHO05D004327 2.0e-18 97.8 156 41.0
Migut.H00604 Erythranthe guttata HOM05D003744 ORTHO05D004327 9.9e-18 95.5 154 38.3
Migut.N01582 Erythranthe guttata HOM05D003744 ORTHO05D004327 5.4e-16 89.7 149 37.6
TPR.G23229 Trifolium pratense HOM05D003744 ORTHO05D004327 9.3e-16 89.0 51 74.5
Cpa.g.sc5.29 Carica papaya HOM05D003744 ORTHO05D004327 1.0e-14 85.5 161 39.1
DCAR_026463 Daucus carota HOM05D003744 ORTHO05D004327 3.9e-14 83.6 162 37.7
C03p80520 Brassica napus HOM05D003744 ORTHO05D004327 6.6e-14 82.8 50 82.0
Cc04_g13900 Coffea canephora HOM05D003744 ORTHO05D004327 1.5e-13 81.6 56 69.6
Aqoxy5G00880 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 3.1e-11 73.9 51 60.8
RcHm_v2.0_Chr5g0044971 Rosa chinensis HOM05D003744 ORTHO05D004327 4.5e-10 70.1 43 83.7
vmacro10898 Vaccinium macrocarpon HOM05D003744 ORTHO05D004327 2.1e-07 61.2 45 62.2
Nn2g14220 Nelumbo nucifera HOM05D003744 ORTHO05D004327 3.0e-06 57.4 41 73.2


User provided reference genes

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