Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp7g20380 Schrenkiella parvula HOM05D005176 ORTHO05D006482 2.9e-199 698.4 346 100.0
Thhalv10025624m.g Eutrema salsugineum HOM05D005176 ORTHO05D006482 1.8e-185 652.5 345 93.3
CARHR229150 Cardamine hirsuta HOM05D005176 ORTHO05D006482 3.0e-172 608.6 351 88.6
BcaNung03749 Brassica carinata HOM05D005176 ORTHO05D006482 5.1e-172 607.8 348 87.4
AL7G31370 Arabidopsis lyrata HOM05D005176 ORTHO05D006482 6.6e-172 607.4 350 88.6
BcaC09g51146 Brassica carinata HOM05D005176 ORTHO05D006482 2.8e-170 602.1 347 86.5
BraA01t01306Z Brassica rapa HOM05D005176 ORTHO05D006482 3.6e-170 601.7 347 86.2
BolC1t01601H Brassica oleracea HOM05D005176 ORTHO05D006482 1.1e-169 600.1 347 86.2
Carub.0007s1906 Capsella rubella HOM05D005176 ORTHO05D006482 1.1e-166 590.1 353 85.6
C01p16510 Brassica napus HOM05D005176 ORTHO05D006482 3.9e-164 581.6 337 85.8
A01p13630 Brassica napus HOM05D005176 ORTHO05D006482 8.7e-164 580.5 337 85.5
AT4G22260 Arabidopsis thaliana HOM05D005176 ORTHO05D006482 2.1e-157 559.3 350 82.3
Aa31LG6G4370 Aethionema arabicum HOM05D005176 ORTHO05D006482 3.5e-157 558.5 388 76.0
THA.LOC104812984 Tarenaya hassleriana HOM05D005176 ORTHO05D006482 4.6e-149 531.6 355 74.6
Cpa.g.sc152.62 Carica papaya HOM05D005176 ORTHO05D006482 4.8e-138 495.0 330 73.6
Ciclev10015546m.g Citrus clementina HOM05D005176 ORTHO05D006482 6.9e-137 491.1 322 73.3
Gohir.A05G173800 Gossypium hirsutum HOM05D005176 ORTHO05D006482 1.1e-134 483.8 303 76.2
COL.COLO4_31852 Corchorus olitorius HOM05D005176 ORTHO05D006482 1.4e-134 483.4 329 71.4
Gorai.009G182200 Gossypium raimondii HOM05D005176 ORTHO05D006482 1.9e-134 483.0 337 70.9
CANSAT56G2407 Cannabis sativa HOM05D005176 ORTHO05D006482 7.2e-134 481.1 344 69.8
Thecc.06G230100 Theobroma cacao HOM05D005176 ORTHO05D006482 2.7e-133 479.2 331 71.6
Sabra11G0011400 Salix brachista HOM05D005176 ORTHO05D006482 1.4e-132 476.9 351 69.5
Sabra11G0013200 Salix brachista HOM05D005176 ORTHO05D006482 1.4e-132 476.9 351 69.5
Oeu002752.3 Olea europaea HOM05D005176 ORTHO05D006482 2.3e-132 476.1 301 75.7
FvH4_3g01250 Fragaria vesca HOM05D005176 ORTHO05D006482 3.9e-132 475.3 311 74.0
MD10G1328600 Malus domestica HOM05D005176 ORTHO05D006482 8.8e-132 474.2 339 70.2
Lj1A1237T47 Lonicera japonica HOM05D005176 ORTHO05D006482 1.1e-131 473.8 352 68.2
Migut.M01360 Erythranthe guttata HOM05D005176 ORTHO05D006482 1.9e-131 473.0 326 72.1
CiPaw.09G100100 Carya illinoinensis HOM05D005176 ORTHO05D006482 2.5e-131 472.6 344 68.6
Sopen11g006800 Solanum pennellii HOM05D005176 ORTHO05D006482 3.3e-131 472.2 299 75.9
PGR042G2916 Punica granatum HOM05D005176 ORTHO05D006482 5.7e-131 471.5 317 73.2
Rhsim13G0148600 Rhododendron simsii HOM05D005176 ORTHO05D006482 5.7e-131 471.5 312 73.1
Solyc11g011990.2 Solanum lycopersicum HOM05D005176 ORTHO05D006482 7.4e-131 471.1 299 75.9
PGSC0003DMG400013335 Solanum tuberosum HOM05D005176 ORTHO05D006482 7.4e-131 471.1 321 72.6
PSO832G1336 Papaver somniferum HOM05D005176 ORTHO05D006482 9.7e-131 470.7 320 72.5
Potri.011G021800 Populus trichocarpa HOM05D005176 ORTHO05D006482 9.7e-131 470.7 308 75.3
Haze_06890 Corylus avellana HOM05D005176 ORTHO05D006482 1.3e-130 470.3 354 66.7
Prupe.4G013400 Prunus persica HOM05D005176 ORTHO05D006482 1.7e-130 469.9 305 73.4
QL03p008214 Quercus lobata HOM05D005176 ORTHO05D006482 2.8e-130 469.2 328 70.7
QL05p070074 Quercus lobata HOM05D005176 ORTHO05D006482 2.8e-130 469.2 328 70.7
SalBow8G4341 Salvia bowleyana HOM05D005176 ORTHO05D006482 2.8e-130 469.2 315 73.0
Aqoxy1G04164 Aquilegia oxysepala HOM05D005176 ORTHO05D006482 1.1e-129 467.2 313 71.2
CSS0003829 Camellia sinensis var. sinensis HOM05D005176 ORTHO05D006482 1.1e-129 467.2 302 73.8
Sc05g0009510 Simmondsia chinensis HOM05D005176 ORTHO05D006482 1.1e-129 467.2 308 73.7
TAR626G1813 Trochodendron aralioides HOM05D005176 ORTHO05D006482 1.4e-129 466.8 308 73.4
EL10Ac8g20147 Beta vulgaris HOM05D005176 ORTHO05D006482 1.8e-129 466.5 345 71.0
Hma1.2p1_0660F.1_g197450 Hydrangea macrophylla HOM05D005176 ORTHO05D006482 1.8e-129 466.5 303 72.6
Gohir.D05G176800 Gossypium hirsutum HOM05D005176 ORTHO05D006482 2.4e-129 466.1 337 69.4
MSTRG.16005 Avicennia marina HOM05D005176 ORTHO05D006482 3.1e-129 465.7 325 70.2
MELO3C021713.2 Cucumis melo HOM05D005176 ORTHO05D006482 4.1e-129 465.3 310 73.9
Eucgr.E03960 Eucalyptus grandis HOM05D005176 ORTHO05D006482 5.3e-129 464.9 352 67.9
FAN25G2381 Fragaria x ananassa HOM05D005176 ORTHO05D006482 5.3e-129 464.9 319 71.5
Ca_00707_v3 Cicer arietinum L. HOM05D005176 ORTHO05D006482 1.2e-128 463.8 324 70.4
RcHm_v2.0_Chr5g0001781 Rosa chinensis HOM05D005176 ORTHO05D006482 1.5e-128 463.4 342 68.4
Phvul.006G144800 Phaseolus vulgaris HOM05D005176 ORTHO05D006482 3.4e-128 462.2 300 76.0
VMungo0540G1825 Vigna mungo HOM05D005176 ORTHO05D006482 3.4e-128 462.2 310 73.5
Medtr2g025140 Medicago truncatula HOM05D005176 ORTHO05D006482 4.5e-128 461.8 348 66.7
arahy.Tifrunner.gnm1.ann1.E5J967 Arachis hypogaea HOM05D005176 ORTHO05D006482 5.9e-128 461.5 306 74.8
Glyma.09G008500 Glycine max HOM05D005176 ORTHO05D006482 5.9e-128 461.5 314 72.6
Dinv20117 Davidia involucrata HOM05D005176 ORTHO05D006482 7.7e-128 461.1 297 74.4
Lsat_1_v5_gn_7_14460 Lactuca sativa HOM05D005176 ORTHO05D006482 1.0e-127 460.7 329 69.0
Hund21443 Selenicereus undatus HOM05D005176 ORTHO05D006482 1.0e-127 460.7 306 72.9
Manes.16G002000 Manihot esculenta HOM05D005176 ORTHO05D006482 1.3e-127 460.3 314 71.7
CAN.G1186.9 Capsicum annuum HOM05D005176 ORTHO05D006482 1.7e-127 459.9 306 72.9
TWI63G1683 Tripterygium wilfordii HOM05D005176 ORTHO05D006482 2.2e-127 459.5 326 69.9
Nn1g03357 Nelumbo nucifera HOM05D005176 ORTHO05D006482 2.9e-127 459.1 299 73.6
arahy.Tifrunner.gnm1.ann1.8PRB68 Arachis hypogaea HOM05D005176 ORTHO05D006482 6.5e-127 458.0 312 73.1
AUR62012769 Chenopodium quinoa HOM05D005176 ORTHO05D006482 6.5e-127 458.0 313 73.5
Glyma.15G112900 Glycine max HOM05D005176 ORTHO05D006482 1.1e-126 457.2 314 72.0
Lalb_Chr15g0087861 Lupinus albus HOM05D005176 ORTHO05D006482 1.1e-126 457.2 326 68.4
Psat1g177440 Pisum sativum HOM05D005176 ORTHO05D006482 1.1e-126 457.2 318 71.1
TWI38G1933 Tripterygium wilfordii HOM05D005176 ORTHO05D006482 2.5e-126 456.1 345 66.1
CsaV3_1G045890 Cucumis sativus L. HOM05D005176 ORTHO05D006482 3.2e-126 455.7 312 71.8
Lj6g0018145 Lotus japonicus HOM05D005176 ORTHO05D006482 4.2e-126 455.3 313 72.8
vmacro03656 Vaccinium macrocarpon HOM05D005176 ORTHO05D006482 4.2e-126 455.3 323 69.0
Cc09_g01070 Coffea canephora HOM05D005176 ORTHO05D006482 9.4e-126 454.1 301 72.1
DCAR_004870 Daucus carota HOM05D005176 ORTHO05D006482 1.2e-125 453.8 326 68.1
TPR.G13024 Trifolium pratense HOM05D005176 ORTHO05D006482 6.1e-125 451.4 304 71.7
unitig_748.g7945 Utricularia gibba HOM05D005176 ORTHO05D006482 1.8e-124 449.9 300 70.7
Cfa000134 Carpinus fangiana HOM05D005176 ORTHO05D006482 1.5e-123 446.8 315 70.5
Actinidia26877 Actinidia chinensis HOM05D005176 ORTHO05D006482 7.4e-123 444.5 289 74.4
HanXRQChr05g0129171 Helianthus annuus HOM05D005176 ORTHO05D006482 3.1e-121 439.1 300 70.7
Atru.chr10.2310 Acer truncatum HOM05D005176 ORTHO05D006482 1.5e-120 436.8 316 67.7
PSO210G5061 Papaver somniferum HOM05D005176 ORTHO05D006482 2.2e-119 433.0 320 69.1
Sabra04G0001100 Salix brachista HOM05D005176 ORTHO05D006482 5.0e-119 431.8 296 70.3
Potri.004G002600 Populus trichocarpa HOM05D005176 ORTHO05D006482 1.9e-118 429.9 297 69.7
Sed0020812 Sechium edule HOM05D005176 ORTHO05D006482 5.5e-118 428.3 266 76.7
ATR1128G104 Amborella trichopoda HOM05D005176 ORTHO05D006482 7.2e-118 427.9 320 68.8
Nitab4.5_0000143g0540 Nicotiana tabacum HOM05D005176 ORTHO05D006482 8.0e-117 424.5 321 67.6
SGA_v2.0_scaffold7G03794 Striga asiatica HOM05D005176 ORTHO05D006482 6.7e-116 421.4 357 63.0
Os04g0668900 Oryza sativa ssp. japonica HOM05D005176 ORTHO05D006482 4.8e-114 415.2 345 62.9
CDE04G3552 Ceratophyllum demersum HOM05D005176 ORTHO05D006482 2.9e-111 406.0 370 58.1
TAR624G0457 Trochodendron aralioides HOM05D005176 ORTHO05D006482 1.9e-110 403.3 227 82.4
Ah.09g234400 Amaranthus hybridus HOM05D005176 ORTHO05D006482 2.7e-109 399.4 348 62.1
Eucgr.E03967 Eucalyptus grandis HOM05D005176 ORTHO05D006482 3.6e-109 399.1 345 63.5
Peaxi162Scf00063g00213 Petunia axillaris HOM05D005176 ORTHO05D006482 3.0e-108 396.0 310 64.8
MBI16_g26179_MAGBIO Magnolia biondii HOM05D005176 ORTHO05D006482 4.0e-108 395.6 352 59.4
MELO3C021708.2 Cucumis melo HOM05D005176 ORTHO05D006482 2.8e-106 389.4 359 57.4
Zm00001eb066910 Zea mays HOM05D005176 ORTHO05D006482 3.7e-106 389.0 355 57.7
GSVIVG01006689001 Vitis vinifera HOM05D005176 ORTHO05D006482 1.2e-104 384.0 274 70.4
MD05G1354300 Malus domestica HOM05D005176 ORTHO05D006482 2.7e-101 372.9 344 59.0
SMO200G0146 Selaginella moellendorffii HOM05D005176 ORTHO05D006482 4.7e-101 372.1 257 69.3
Pp3c1_30120 Physcomitrium patens HOM05D005176 ORTHO05D006482 2.0e-99 366.7 309 58.9
Nitab4.5_0001198g0240 Nicotiana tabacum HOM05D005176 ORTHO05D006482 3.4e-99 365.9 253 71.5
Mapoly0050s0020 Marchantia polymorpha HOM05D005176 ORTHO05D006482 5.4e-97 358.6 272 62.9
FAN21G2852 Fragaria x ananassa HOM05D005176 ORTHO05D006482 2.7e-96 356.3 305 60.7
Pp3c2_11230 Physcomitrium patens HOM05D005176 ORTHO05D006482 3.3e-94 349.4 287 61.0
CBR_g16017 Chara braunii HOM05D005176 ORTHO05D006482 2.6e-91 339.7 216 72.2
PSO675G3403 Papaver somniferum HOM05D005176 ORTHO05D006482 5.4e-89 332.0 243 68.7
ClCG01G009770 Citrullus lanatus HOM05D005176 ORTHO05D006482 4.7e-85 318.9 246 67.5
Zm00001eb066920 Zea mays HOM05D005176 ORTHO05D006482 1.1e-81 307.8 300 55.0
Duzib160G0919 Durio zibethinus HOM05D005176 ORTHO05D006482 1.1e-78 297.7 323 51.7
Hma1.2p1_2753F.1_g327930 Hydrangea macrophylla HOM05D005176 ORTHO05D006482 3.2e-73 279.6 224 62.1
MCO02G133 Micromonas commoda HOM05D005176 ORTHO05D006482 4.3e-70 269.2 216 60.2
PRCOL_00003826 Prasinoderma coloniale HOM05D005176 ORTHO05D006482 1.6e-69 267.3 283 49.8
FAN21G2340 Fragaria x ananassa HOM05D005176 ORTHO05D006482 1.2e-67 261.2 196 67.3
Dinv13952 Davidia involucrata HOM05D005176 ORTHO05D006482 1.3e-66 257.7 232 59.5
HPP92_004745 Vanilla planifolia HOM05D005176 ORTHO05D006482 1.7e-66 257.3 231 59.3
Pp3c27_6780 Physcomitrium patens HOM05D005176 ORTHO05D006482 5.1e-63 245.7 207 56.0
SMO147G0375 Selaginella moellendorffii HOM05D005176 ORTHO05D006482 1.6e-61 240.7 201 55.7
AagrBONN_evm.TU.Sc2ySwM_362.2521 Anthoceros agrestis HOM05D005176 ORTHO05D006482 3.4e-59 233.0 200 55.0
Cre07.g350750 Chlamydomonas reinhardtii HOM05D005176 ORTHO05D006482 6.4e-58 228.8 210 53.8
Mapoly0003s0157 Marchantia polymorpha HOM05D005176 ORTHO05D006482 1.4e-57 227.6 192 56.2
Cre03.g172500 Chlamydomonas reinhardtii HOM05D005176 ORTHO05D006482 5.1e-55 219.2 195 54.4
AUR62021889 Chenopodium quinoa HOM05D005176 ORTHO05D006482 8.4e-50 201.8 313 42.2
MCO02G403 Micromonas commoda HOM05D005176 ORTHO05D006482 1.2e-48 198.0 190 51.6
Duzib235G1273 Durio zibethinus HOM05D005176 ORTHO05D006482 1.6e-45 187.6 111 78.4
GSVIVG01007272001 Vitis vinifera HOM05D005176 ORTHO05D006482 7.6e-43 178.7 293 42.0
Hma1.2p1_0298F.1_g117340 Hydrangea macrophylla HOM05D005176 ORTHO05D006482 1.9e-38 164.1 116 68.1
PRCOL_00006497 Prasinoderma coloniale HOM05D005176 ORTHO05D006482 6.9e-36 155.6 141 52.5
SEGI_26802 Sequoiadendron giganteum HOM05D005176 ORTHO05D006482 2.6e-35 153.7 107 64.5
AagrBONN_evm.TU.Sc2ySwM_344.415 Anthoceros agrestis HOM05D005176 ORTHO05D006482 1.7e-34 151.0 103 68.9
HPP92_004744 Vanilla planifolia HOM05D005176 ORTHO05D006482 4.9e-34 149.4 101 65.3
A03p53390 Brassica napus HOM05D005176 ORTHO05D006482 7.9e-32 142.1 117 66.7
SEGI_01990 Sequoiadendron giganteum HOM05D005176 ORTHO05D006482 2.4e-28 130.6 68 86.8
QL03p008204 Quercus lobata HOM05D005176 ORTHO05D006482 5.8e-27 125.9 108 60.2
BraA03t14406Z Brassica rapa HOM05D005176 ORTHO05D006482 2.1e-24 117.5 103 65.0
BolC7t45661H Brassica oleracea HOM05D005176 ORTHO05D006482 4.5e-19 99.8 71 70.4
Os03g0847500 Oryza sativa ssp. japonica HOM05D005176 ORTHO05D038931 9.4e-17 92.0 140 45.7
arahy.Tifrunner.gnm1.ann1.E0HWS1 Arachis hypogaea HOM05D005176 ORTHO05D038931 2.7e-16 90.5 94 56.4
CBR_g12323 Chara braunii HOM05D005176 ORTHO05D006482 1.4e-15 88.2 65 60.0
Lj3g0010948 Lotus japonicus HOM05D005176 ORTHO05D006482 2.8e-13 80.5 37 91.9
PSO447G0350 Papaver somniferum HOM05D001659 ORTHO05D001659 3.1e-12 77.0 191 29.3
Manes.06G012700 Manihot esculenta HOM05D001659 ORTHO05D001659 2.0e-11 74.3 191 28.3
Gohir.D02G197300 Gossypium hirsutum HOM05D001659 ORTHO05D001659 2.6e-11 73.9 191 28.8
RcHm_v2.0_Chr4g0397111 Rosa chinensis HOM05D001659 ORTHO05D001659 2.6e-11 73.9 219 28.3
CBR_g12320 Chara braunii HOM05D000019 ORTHO05D009492 3.4e-11 73.6 81 45.7
Hund06382 Selenicereus undatus HOM05D001659 ORTHO05D001659 3.4e-11 73.6 218 27.5
Eucgr.E03965 Eucalyptus grandis HOM05D005176 ORTHO05D006482 1.0e-10 72.0 51 68.6
Pp3c2_12680 Physcomitrium patens HOM05D001659 ORTHO05D001659 1.0e-10 72.0 180 28.3
Aa31LG2G13660 Aethionema arabicum HOM05D001659 ORTHO05D001659 2.2e-10 70.9 191 29.3
vmacro00077 Vaccinium macrocarpon HOM05D001659 ORTHO05D001659 2.9e-10 70.5 199 28.1
FAN07G0088 Fragaria x ananassa HOM05D001659 ORTHO05D001659 1.1e-09 68.6 219 27.9
Thhalv10009342m.g Eutrema salsugineum HOM05D001659 ORTHO05D001659 1.4e-09 68.2 191 28.8
AT1G32350 Arabidopsis thaliana HOM05D001659 ORTHO05D001659 1.9e-09 67.8 191 28.3
AL1G46540 Arabidopsis lyrata HOM05D001659 ORTHO05D001659 2.5e-09 67.4 191 28.3
FvH4_4g05930 Fragaria vesca HOM05D001659 ORTHO05D001659 2.5e-09 67.4 219 27.4
FAN12G0150 Fragaria x ananassa HOM05D001659 ORTHO05D001659 2.5e-09 67.4 219 27.4
FAN17G3134 Fragaria x ananassa HOM05D001659 ORTHO05D001659 2.5e-09 67.4 219 27.4
Sp1g28550 Schrenkiella parvula HOM05D001659 ORTHO05D001659 2.5e-09 67.4 191 28.3
CDE04G3729 Ceratophyllum demersum HOM05D001659 ORTHO05D001659 4.2e-09 66.6 180 27.8
CARHR031720 Cardamine hirsuta HOM05D001659 ORTHO05D001659 2.7e-08 63.9 191 27.7
HanXRQChr03g0081111 Helianthus annuus HOM05D001659 ORTHO05D001659 1.8e-07 61.2 180 26.1
HanXRQChr03g0081321 Helianthus annuus HOM05D001659 ORTHO05D001659 1.8e-07 61.2 180 26.1
Cfa025176 Carpinus fangiana HOM05D002996 ORTHO05D003536 3.9e-07 60.1 193 27.5
HanXRQChr13g0411111 Helianthus annuus HOM05D001659 ORTHO05D001659 6.7e-07 59.3 180 26.1
PRCOL_00006496 Prasinoderma coloniale HOM05D005176 ORTHO05D006482 2.0e-06 57.8 53 56.6


User provided reference genes

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