Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp7g20190 Schrenkiella parvula HOM05D001081 ORTHO05D007101 8.9e-69 263.5 131 100.0
BcaC09g51172 Brassica carinata HOM05D001081 ORTHO05D007101 2.2e-67 258.8 131 97.7
BcaNung05107 Brassica carinata HOM05D001081 ORTHO05D007101 2.2e-67 258.8 131 97.7
BolC1t01570H Brassica oleracea HOM05D001081 ORTHO05D007101 2.2e-67 258.8 131 97.7
Thhalv10026223m.g Eutrema salsugineum HOM05D001081 ORTHO05D007101 2.2e-67 258.8 131 97.7
A01p13390 Brassica napus HOM05D001081 ORTHO05D007101 2.9e-67 258.5 131 97.7
BraA01t01281Z Brassica rapa HOM05D001081 ORTHO05D007101 2.9e-67 258.5 131 97.7
C01p16100 Brassica napus HOM05D001081 ORTHO05D007101 4.9e-67 257.7 131 96.9
AT4G22000 Arabidopsis thaliana HOM05D001081 ORTHO05D007101 4.1e-66 254.6 131 96.2
AL7G31700 Arabidopsis lyrata HOM05D001081 ORTHO05D007101 2.0e-65 252.3 131 95.4
Carub.0007s1934 Capsella rubella HOM05D001081 ORTHO05D007101 7.8e-65 250.4 131 94.7
CARHR228810 Cardamine hirsuta HOM05D001081 ORTHO05D007101 1.3e-64 249.6 132 95.5
Aa31LG6G3950 Aethionema arabicum HOM05D001081 ORTHO05D007101 1.1e-58 229.9 131 87.0
THA.LOC104798899 Tarenaya hassleriana HOM05D001081 ORTHO05D007101 3.5e-57 224.9 131 83.2
THA.LOC104823111 Tarenaya hassleriana HOM05D001081 ORTHO05D007101 8.6e-56 220.3 131 80.9
Cpa.g.sc3.88 Carica papaya HOM05D001081 ORTHO05D007101 6.2e-54 214.2 131 80.2
Sed0024875 Sechium edule HOM05D001081 ORTHO05D007101 8.1e-54 213.8 128 78.9
Thecc.03G199300 Theobroma cacao HOM05D001081 ORTHO05D007101 6.8e-53 210.7 128 78.9
Eucgr.F01156 Eucalyptus grandis HOM05D001081 ORTHO05D007101 8.9e-53 210.3 125 80.0
CiPaw.06G046200 Carya illinoinensis HOM05D001081 ORTHO05D007101 1.2e-52 209.9 127 78.7
Nn3g16671 Nelumbo nucifera HOM05D001081 ORTHO05D007101 1.2e-52 209.9 124 79.8
Duzib068G1165 Durio zibethinus HOM05D001081 ORTHO05D007101 1.5e-52 209.5 128 78.1
Cfa016232 Carpinus fangiana HOM05D001081 ORTHO05D007101 2.6e-52 208.8 127 78.7
Ah.05g173160 Amaranthus hybridus HOM05D001081 ORTHO05D007101 3.4e-52 208.4 128 78.9
COL.COLO4_16767 Corchorus olitorius HOM05D001081 ORTHO05D007101 3.4e-52 208.4 128 78.9
Nn6g34886 Nelumbo nucifera HOM05D001081 ORTHO05D007101 3.4e-52 208.4 124 79.0
Duzib205G0894 Durio zibethinus HOM05D001081 ORTHO05D007101 4.4e-52 208.0 128 78.1
Glyma.05G143900 Glycine max HOM05D001081 ORTHO05D007101 9.9e-52 206.8 127 78.0
Gohir.A05G100100 Gossypium hirsutum HOM05D001081 ORTHO05D007101 9.9e-52 206.8 128 76.6
Ah.03g146510 Amaranthus hybridus HOM05D001081 ORTHO05D007101 1.3e-51 206.5 128 78.9
QL09p008866 Quercus lobata HOM05D001081 ORTHO05D007101 1.3e-51 206.5 127 78.0
QL09p009112 Quercus lobata HOM05D001081 ORTHO05D007101 1.3e-51 206.5 127 78.0
Sed0012325 Sechium edule HOM05D001081 ORTHO05D007101 1.7e-51 206.1 128 75.8
Haze_00208 Corylus avellana HOM05D001081 ORTHO05D004708 2.2e-51 205.7 127 78.0
Ciclev10022846m.g Citrus clementina HOM05D001081 ORTHO05D007101 2.9e-51 205.3 128 78.1
Gohir.D05G099900 Gossypium hirsutum HOM05D001081 ORTHO05D007101 3.7e-51 204.9 128 75.8
Gorai.009G103900 Gossypium raimondii HOM05D001081 ORTHO05D007101 3.7e-51 204.9 128 75.8
Atru.chr12.2201 Acer truncatum HOM05D001081 ORTHO05D007101 4.9e-51 204.5 129 77.5
MD07G1288300 Malus domestica HOM05D001081 ORTHO05D007101 4.9e-51 204.5 128 75.0
Phvul.003G125501 Phaseolus vulgaris HOM05D001081 ORTHO05D007101 6.4e-51 204.1 127 76.4
Phvul.001G061700 Phaseolus vulgaris HOM05D001081 ORTHO05D007101 1.1e-50 203.4 127 76.4
VMungo0251G0734 Vigna mungo HOM05D001081 ORTHO05D007101 1.4e-50 203.0 127 77.2
Glyma.08G100200 Glycine max HOM05D001081 ORTHO05D007101 1.9e-50 202.6 127 76.4
Lj5g0017992 Lotus japonicus HOM05D001081 ORTHO05D007101 1.9e-50 202.6 127 76.4
CANSAT21G1508 Cannabis sativa HOM05D001081 ORTHO05D007101 3.2e-50 201.8 127 77.2
ECA238G0006 Erigeron canadensis HOM05D001081 ORTHO05D007101 3.2e-50 201.8 124 77.4
Sc13g0009920 Simmondsia chinensis HOM05D001081 ORTHO05D007101 3.2e-50 201.8 128 76.6
TAR625G0271 Trochodendron aralioides HOM05D001081 ORTHO05D007101 3.2e-50 201.8 129 75.2
Prupe.2G309800 Prunus persica HOM05D001081 ORTHO05D007101 4.1e-50 201.4 127 75.6
EL10Ac1g00785 Beta vulgaris HOM05D001081 ORTHO05D007101 5.4e-50 201.1 126 77.0
FAN10G3364 Fragaria x ananassa HOM05D001081 ORTHO05D007101 5.4e-50 201.1 127 76.4
FAN10G4231 Fragaria x ananassa HOM05D001081 ORTHO05D007101 5.4e-50 201.1 127 76.4
Lj4P697T30 Lonicera japonica HOM05D001081 ORTHO05D007101 5.4e-50 201.1 126 75.4
Lalb_Chr13g0294051 Lupinus albus HOM05D001081 ORTHO05D007101 5.4e-50 201.1 128 74.2
AUR62023429 Chenopodium quinoa HOM05D001081 ORTHO05D007101 1.2e-49 199.9 127 76.4
Lj4g0009093 Lotus japonicus HOM05D001081 ORTHO05D007101 1.2e-49 199.9 127 75.6
Aqoxy4G03008 Aquilegia oxysepala HOM05D001081 ORTHO05D007101 1.6e-49 199.5 124 76.6
AUR62018052 Chenopodium quinoa HOM05D001081 ORTHO05D007101 1.6e-49 199.5 127 76.4
GSVIVG01009969001 Vitis vinifera HOM05D001081 ORTHO05D007101 1.6e-49 199.5 122 77.0
FvH4_7g31560 Fragaria vesca HOM05D001081 ORTHO05D007101 2.1e-49 199.1 127 75.6
FAN06G0656 Fragaria x ananassa HOM05D001081 ORTHO05D007101 2.1e-49 199.1 127 75.6
RcHm_v2.0_Chr1g0380551 Rosa chinensis HOM05D001081 ORTHO05D007101 2.1e-49 199.1 127 74.8
Hund21005 Selenicereus undatus HOM05D001081 ORTHO05D007101 2.1e-49 199.1 127 74.8
Aqoxy3G01434 Aquilegia oxysepala HOM05D001081 ORTHO05D007101 3.5e-49 198.4 124 76.6
HanXRQChr14g0429651 Helianthus annuus HOM05D001081 ORTHO05D007101 3.5e-49 198.4 131 73.3
PGR083G2221 Punica granatum HOM05D001081 ORTHO05D007101 3.5e-49 198.4 125 75.2
TWI74G0183 Tripterygium wilfordii HOM05D001081 ORTHO05D007101 3.5e-49 198.4 127 75.6
FAN01G2588 Fragaria x ananassa HOM05D001081 ORTHO05D007101 4.6e-49 198.0 127 74.8
Os05g0114600 Oryza sativa ssp. japonica HOM05D001081 ORTHO05D007101 4.6e-49 198.0 127 76.4
Manes.18G126800 Manihot esculenta HOM05D001081 ORTHO05D007101 1.0e-48 196.8 125 76.8
FAN06G3917 Fragaria x ananassa HOM05D001081 ORTHO05D007101 1.3e-48 196.4 127 74.8
CDE05G3015 Ceratophyllum demersum HOM05D001081 ORTHO05D007101 1.7e-48 196.1 131 72.5
Cc10_g01340 Coffea canephora HOM05D001081 ORTHO05D007101 2.3e-48 195.7 127 75.6
Lsat_1_v5_gn_2_7800 Lactuca sativa HOM05D000015 ORTHO05D002445 3.0e-48 195.3 127 72.4
Nitab4.5_0004146g0010 Nicotiana tabacum HOM05D001081 ORTHO05D007101 3.0e-48 195.3 126 74.6
Nitab4.5_0004513g0030 Nicotiana tabacum HOM05D001081 ORTHO05D007101 3.0e-48 195.3 126 73.8
MBI07_g23667_MAGBIO Magnolia biondii HOM05D001081 ORTHO05D007101 6.6e-48 194.1 127 74.0
unitig_32.g11232 Utricularia gibba HOM05D001081 ORTHO05D007101 6.6e-48 194.1 126 73.0
Ca_18157_v3 Cicer arietinum L. HOM05D001081 ORTHO05D007101 8.6e-48 193.7 127 72.4
CsaV3_3G019840 Cucumis sativus L. HOM05D001081 ORTHO05D007101 1.1e-47 193.4 131 71.8
Atru.chr9.478 Acer truncatum HOM05D001081 ORTHO05D007101 1.5e-47 193.0 129 72.9
MELO3C008496.2 Cucumis melo HOM05D001081 ORTHO05D007101 1.5e-47 193.0 131 71.8
Psat7g080240 Pisum sativum HOM05D001081 ORTHO05D007101 1.5e-47 193.0 127 73.2
PGSC0003DMG401028646 Solanum tuberosum HOM05D001081 ORTHO05D007101 1.5e-47 193.0 126 72.2
PGSC0003DMG402028646 Solanum tuberosum HOM05D001081 ORTHO05D007101 1.5e-47 193.0 126 72.2
Potri.012G015800 Populus trichocarpa HOM05D001081 ORTHO05D007101 1.9e-47 192.6 127 72.4
SGA_v2.0_scaffold25G11207 Striga asiatica HOM05D001081 ORTHO05D007101 1.9e-47 192.6 126 72.2
PSO541G4732 Papaver somniferum HOM05D001081 ORTHO05D007101 3.3e-47 191.8 127 73.2
PSO675G3624 Papaver somniferum HOM05D001081 ORTHO05D007101 3.3e-47 191.8 127 73.2
TAR381G1700 Trochodendron aralioides HOM05D001081 ORTHO05D007101 3.3e-47 191.8 124 74.2
FAN03G0412 Fragaria x ananassa HOM05D001081 ORTHO05D007101 4.3e-47 191.4 127 73.2
Potri.015G012700 Populus trichocarpa HOM05D001081 ORTHO05D007101 4.3e-47 191.4 127 72.4
TPR.G9557 Trifolium pratense HOM05D001081 ORTHO05D007101 5.6e-47 191.0 127 73.2
CAN.G411.51 Capsicum annuum HOM05D001081 ORTHO05D007101 7.3e-47 190.7 124 71.8
SGA_v2.0_scaffold19G08564 Striga asiatica HOM05D001081 ORTHO05D007101 7.3e-47 190.7 126 73.0
MSTRG.22347 Avicennia marina HOM05D001081 ORTHO05D007101 9.6e-47 190.3 126 73.0
vmacro12512 Vaccinium macrocarpon HOM05D001081 ORTHO05D007101 3.6e-46 188.3 130 72.3
Peaxi162Scf00071g00017 Petunia axillaris HOM05D001081 ORTHO05D007101 4.7e-46 188.0 126 73.0
Medtr8g079498 Medicago truncatula HOM05D001081 ORTHO05D007101 8.1e-46 187.2 128 72.7
Zm00001eb355650 Zea mays HOM05D001081 ORTHO05D007101 1.1e-45 186.8 127 74.8
SalBow6G0310 Salvia bowleyana HOM05D001081 ORTHO05D007101 1.4e-45 186.4 126 71.4
Sopen12g021900 Solanum pennellii HOM05D001081 ORTHO05D007101 2.4e-45 185.7 126 70.6
Sopen12g021840 Solanum pennellii HOM05D001081 ORTHO05D007101 5.2e-45 184.5 126 69.8
SHI02421 Sapria himalayana HOM05D006156 ORTHO05D007101 6.8e-45 184.1 127 67.7
DCAR_013886 Daucus carota HOM05D001081 ORTHO05D007101 2.6e-44 182.2 126 69.0
vmacro07565 Vaccinium macrocarpon HOM05D001081 ORTHO05D007101 4.4e-44 181.4 130 69.2
Migut.N03179 Erythranthe guttata HOM05D001081 ORTHO05D007101 5.8e-44 181.0 126 69.0
HPP92_008968 Vanilla planifolia HOM05D001081 ORTHO05D007101 2.2e-43 179.1 108 75.0
BcaB03g11721 Brassica carinata HOM05D001081 ORTHO05D007101 3.8e-43 178.3 103 87.4
Solyc12g042700.3 Solanum lycopersicum HOM05D001081 ORTHO05D007101 3.8e-43 178.3 126 68.3
SEGI_15379 Sequoiadendron giganteum HOM05D001081 ORTHO05D007101 2.4e-42 175.6 129 71.3
AUR62013725 Chenopodium quinoa HOM05D001081 ORTHO05D007101 7.1e-42 174.1 105 80.0
CDE11G0170 Ceratophyllum demersum HOM05D001081 ORTHO05D007101 1.0e-40 170.2 131 67.9
MSTRG.25269 Avicennia marina HOM05D001081 ORTHO05D007101 1.1e-39 166.8 169 52.7
ATR1134G096 Amborella trichopoda HOM05D001081 ORTHO05D007101 1.4e-37 159.8 96 75.0
ClCG05G008950 Citrullus lanatus HOM05D001081 ORTHO05D007101 6.4e-35 151.0 91 82.4
CSS0017659 Camellia sinensis var. sinensis HOM05D001081 ORTHO05D007101 3.0e-32 142.1 82 81.7
Actinidia17007 Actinidia chinensis HOM05D001081 ORTHO05D007101 2.6e-28 129.0 82 70.7
Dinv31879 Davidia involucrata HOM05D001081 ORTHO05D007101 3.2e-26 122.1 78 78.2
Solyc12g042720.3 Solanum lycopersicum HOM05D001081 ORTHO05D007101 2.7e-25 119.0 78 73.1
SMO356G0374 Selaginella moellendorffii HOM05D001081 ORTHO05D007101 1.0e-24 117.1 88 62.5
Mapoly0012s0096 Marchantia polymorpha HOM05D001081 ORTHO05D007101 3.3e-23 112.1 108 55.6
Pp3c15_6340 Physcomitrium patens HOM05D001081 ORTHO05D007101 2.1e-22 109.4 89 61.8
Gohir.A09G033580 Gossypium hirsutum HOM05D001081 ORTHO05D007101 1.1e-21 107.1 68 75.0
CSS0023065 Camellia sinensis var. sinensis HOM05D001081 ORTHO05D007101 6.9e-21 104.4 61 83.6
Gohir.D09G034100 Gossypium hirsutum HOM05D001081 ORTHO05D007101 1.2e-20 103.6 68 75.0
Gorai.006G039100 Gossypium raimondii HOM05D001081 ORTHO05D007101 1.2e-20 103.6 128 48.4
CSS0034162 Camellia sinensis var. sinensis HOM05D001081 ORTHO05D007101 6.5e-19 97.8 57 84.2
arahy.Tifrunner.gnm1.ann1.EUX55C Arachis hypogaea HOM05D001081 ORTHO05D007101 8.7e-16 87.4 51 84.3
Nitab4.5_0001077g0030 Nicotiana tabacum HOM05D012963 ORTHO05D007101 1.3e-14 83.6 82 45.1
CBR_g8977 Chara braunii HOM05D001081 ORTHO05D007101 9.0e-13 77.4 81 48.1
Zm00001eb266390 Zea mays HOM05D001081 ORTHO05D007101 3.4e-12 75.5 116 46.6
A03p53190 Brassica napus HOM05D001081 ORTHO05D100949 1.8e-08 63.2 121 40.5
Nitab4.5_0002544g0090 Nicotiana tabacum HOM05D001081 ORTHO05D007101 1.5e-07 60.1 40 65.0
BcaNung00816 Brassica carinata HOM05D001081 ORTHO05D007101 7.4e-07 57.8 46 73.9


User provided reference genes

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