Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp7g19900 Schrenkiella parvula HOM05D005932 ORTHO05D006213 1.9e-75 285.8 149 100.0
BraA03t14366Z Brassica rapa HOM05D005932 ORTHO05D006213 3.8e-60 235.0 149 79.9
A03p52900 Brassica napus HOM05D005932 ORTHO05D006213 3.6e-58 228.4 149 79.2
BcaC06g30675 Brassica carinata HOM05D005932 ORTHO05D006213 3.0e-57 225.3 147 79.6
BolC7t45634H Brassica oleracea HOM05D005932 ORTHO05D006213 9.8e-56 220.3 150 78.0
BcaNung00838 Brassica carinata HOM05D005932 ORTHO05D006213 2.2e-55 219.2 150 77.3
BcaNung00840 Brassica carinata HOM05D005932 ORTHO05D006213 2.2e-55 219.2 150 77.3
C07p51350 Brassica napus HOM05D005932 ORTHO05D006213 4.9e-55 218.0 136 78.7
CARHR228470 Cardamine hirsuta HOM05D005932 ORTHO05D006213 8.6e-52 207.2 148 78.4
Thhalv10026499m.g Eutrema salsugineum HOM05D005932 ORTHO05D006213 2.4e-46 189.1 150 73.3
A01p13050 Brassica napus HOM05D005932 ORTHO05D006213 6.6e-44 181.0 149 73.2
BraA01t01247Z Brassica rapa HOM05D005932 ORTHO05D006213 6.6e-44 181.0 149 73.2
AL7G32200 Arabidopsis lyrata HOM05D005932 ORTHO05D006213 8.6e-44 180.6 151 70.9
AT4G21740 Arabidopsis thaliana HOM05D005932 ORTHO05D006213 3.6e-42 175.3 152 68.4
Aa31LG6G3710 Aethionema arabicum HOM05D005932 ORTHO05D006213 1.9e-35 152.9 149 63.8
Carub.0007s1967 Capsella rubella HOM05D005932 ORTHO05D006213 8.1e-34 147.5 140 67.9
AL7G31630 Arabidopsis lyrata HOM05D005932 ORTHO05D006213 1.8e-33 146.4 151 63.6
BcaC09g51211 Brassica carinata HOM05D005932 ORTHO05D006213 3.8e-31 138.7 149 61.7
C01p15720 Brassica napus HOM05D005932 ORTHO05D006213 3.8e-31 138.7 149 61.7
BolC1t01525H Brassica oleracea HOM05D005932 ORTHO05D006213 3.8e-31 138.7 149 61.7
THA.LOC104806292 Tarenaya hassleriana HOM05D001059 ORTHO05D000873 1.1e-22 110.5 133 51.1
BcaNung02241 Brassica carinata HOM05D006296 ORTHO05D007777 1.6e-18 96.7 58 84.5
Gohir.D10G004200 Gossypium hirsutum HOM05D005932 ORTHO05D006213 6.9e-17 91.3 144 46.5
Gorai.011G004600 Gossypium raimondii HOM05D005932 ORTHO05D006213 2.0e-16 89.7 144 45.8
COL.COLO4_26835 Corchorus olitorius HOM05D005932 ORTHO05D006213 4.5e-16 88.6 142 41.5
Gohir.A10G004200 Gossypium hirsutum HOM05D005932 ORTHO05D006213 4.5e-16 88.6 144 45.1
Duzib235G1239 Durio zibethinus HOM05D005932 ORTHO05D006213 9.9e-16 87.4 121 44.6
Atru.chr10.845 Acer truncatum HOM05D005932 ORTHO05D006213 1.3e-15 87.0 116 44.8
Thecc.06G002100 Theobroma cacao HOM05D005932 ORTHO05D006213 4.9e-15 85.1 134 43.3
Manes.14G123400 Manihot esculenta HOM05D005932 ORTHO05D006213 2.4e-14 82.8 120 42.5
MD10G1253000 Malus domestica HOM05D005932 ORTHO05D006213 2.1e-13 79.7 130 39.2
CiPaw.09G141700 Carya illinoinensis HOM05D005932 ORTHO05D006213 5.1e-12 75.1 129 38.0
Gohir.A03G081000 Gossypium hirsutum HOM05D005932 ORTHO05D006213 5.1e-12 75.1 121 45.5
THA.LOC104798624 Tarenaya hassleriana HOM05D012212 ORTHO05D006213 5.1e-12 75.1 117 41.9
Thhalv10009012m.g Eutrema salsugineum HOM05D012212 ORTHO05D006213 6.7e-12 74.7 118 43.2
CANSAT35G0096 Cannabis sativa HOM05D005932 ORTHO05D006213 8.7e-12 74.3 141 39.0
ClCG03G006250 Citrullus lanatus HOM05D005932 ORTHO05D006213 8.7e-12 74.3 138 39.9
Eucgr.D00155 Eucalyptus grandis HOM05D005932 ORTHO05D006213 1.5e-11 73.6 128 42.2
Glyma.05G166000 Glycine max HOM05D005932 ORTHO05D006213 1.9e-11 73.2 115 41.7
Eucgr.D00169 Eucalyptus grandis HOM05D005932 ORTHO05D006213 3.3e-11 72.4 110 38.2
unitig_37.g12073 Utricularia gibba HOM05D005932 ORTHO05D006213 3.3e-11 72.4 115 39.1
MSTRG.13271 Avicennia marina HOM05D005932 ORTHO05D006213 4.3e-11 72.0 121 36.4
Hma1.2p1_0067F.1_g037010 Hydrangea macrophylla HOM05D005932 ORTHO05D006213 4.3e-11 72.0 107 44.9
Prupe.4G090500 Prunus persica HOM05D005932 ORTHO05D006213 4.3e-11 72.0 123 43.9
Sp1g26360 Schrenkiella parvula HOM05D012212 ORTHO05D006213 4.3e-11 72.0 109 42.2
unitig_92.g28172 Utricularia gibba HOM05D005932 ORTHO05D006213 5.6e-11 71.6 113 38.9
Cfa000817 Carpinus fangiana HOM05D005932 ORTHO05D006213 7.4e-11 71.2 124 43.5
TPR.G6729 Trifolium pratense HOM05D005932 ORTHO05D006213 7.4e-11 71.2 136 36.0
CiPaw.10G109100 Carya illinoinensis HOM05D005932 ORTHO05D006213 9.6e-11 70.9 135 41.5
Gohir.D02G103800 Gossypium hirsutum HOM05D005932 ORTHO05D006213 9.6e-11 70.9 120 40.8
Gorai.005G117900 Gossypium raimondii HOM05D005932 ORTHO05D006213 1.6e-10 70.1 119 40.3
Manes.06G068200 Manihot esculenta HOM05D005932 ORTHO05D006213 1.6e-10 70.1 120 45.0
CSS0012768 Camellia sinensis var. sinensis HOM05D005932 ORTHO05D006213 2.1e-10 69.7 126 34.1
Glyma.08G124100 Glycine max HOM05D005932 ORTHO05D006213 2.1e-10 69.7 117 39.3
Medtr8g088330 Medicago truncatula HOM05D005932 ORTHO05D006213 2.1e-10 69.7 117 41.9
Rhsim02G0161400 Rhododendron simsii HOM05D005932 ORTHO05D006213 2.1e-10 69.7 124 36.3
MD05G1272900 Malus domestica HOM05D005932 ORTHO05D006213 3.7e-10 68.9 118 41.5
Manes.05G115000 Manihot esculenta HOM05D005932 ORTHO05D006213 3.7e-10 68.9 123 36.6
VMungo0251G2717 Vigna mungo HOM05D005932 ORTHO05D006213 3.7e-10 68.9 126 38.9
AL1G44550 Arabidopsis lyrata HOM05D012212 ORTHO05D006213 4.8e-10 68.6 125 44.8
MSTRG.16291 Avicennia marina HOM05D005932 ORTHO05D006213 4.8e-10 68.6 124 40.3
Phvul.002G246500 Phaseolus vulgaris HOM05D005932 ORTHO05D006213 4.8e-10 68.6 126 38.9
Sed0022461 Sechium edule HOM05D005932 ORTHO05D006213 4.8e-10 68.6 143 37.1
Sopen02g006750 Solanum pennellii HOM05D005932 ORTHO05D006213 4.8e-10 68.6 134 36.6
Ca_17852_v3 Cicer arietinum L. HOM05D005932 ORTHO05D006213 6.2e-10 68.2 127 39.4
Duzib192G0542 Durio zibethinus HOM05D005932 ORTHO05D006213 6.2e-10 68.2 121 43.8
TAR626G0301 Trochodendron aralioides HOM05D005932 ORTHO05D006213 6.2e-10 68.2 127 40.9
Sed0024512 Sechium edule HOM05D005932 ORTHO05D006213 1.1e-09 67.4 122 40.2
Migut.M01897 Erythranthe guttata HOM05D005932 ORTHO05D006213 1.4e-09 67.0 132 36.4
Sabra11G0088800 Salix brachista HOM05D005932 ORTHO05D006213 1.8e-09 66.6 146 36.3
Haze_05823 Corylus avellana HOM05D005932 ORTHO05D006213 2.4e-09 66.2 121 44.6
Lalb_Chr07g0185951 Lupinus albus HOM05D005932 ORTHO05D006213 2.4e-09 66.2 127 35.4
VMungo0540G1966 Vigna mungo HOM05D005932 ORTHO05D006213 4.0e-09 65.5 120 38.3
Dinv10792 Davidia involucrata HOM05D005932 ORTHO05D006213 9.0e-09 64.3 112 44.6
Migut.H01328 Erythranthe guttata HOM05D005932 ORTHO05D006213 9.0e-09 64.3 110 43.6
Solyc02g024010.1 Solanum lycopersicum HOM05D005932 ORTHO05D006213 9.0e-09 64.3 129 34.9
PGSC0003DMG400011812 Solanum tuberosum HOM05D005932 ORTHO05D006213 9.0e-09 64.3 138 32.6
PGR083G0615 Punica granatum HOM05D005932 ORTHO05D006213 1.5e-08 63.5 133 35.3
Sed0018131 Sechium edule HOM05D005932 ORTHO05D006213 1.5e-08 63.5 107 40.2
Lj4g0014090 Lotus japonicus HOM05D005932 ORTHO05D006213 2.0e-08 63.2 116 41.4
BcaB07g32687 Brassica carinata HOM05D012212 ORTHO05D006213 2.6e-08 62.8 113 38.9
C05p29520 Brassica napus HOM05D012212 ORTHO05D006213 2.6e-08 62.8 113 38.9
BolC5t31682H Brassica oleracea HOM05D012212 ORTHO05D006213 2.6e-08 62.8 113 38.9
Nn3g20198 Nelumbo nucifera HOM05D005932 ORTHO05D006213 2.6e-08 62.8 145 31.0
BcaB07g32663 Brassica carinata HOM05D012212 ORTHO05D006213 4.5e-08 62.0 116 37.9
DCAR_003852 Daucus carota HOM05D005932 ORTHO05D006213 4.5e-08 62.0 121 37.2
TWI15G0856 Tripterygium wilfordii HOM05D005932 ORTHO05D006213 4.5e-08 62.0 111 39.6
A09p35930 Brassica napus HOM05D012212 ORTHO05D006213 5.8e-08 61.6 146 34.9
Peaxi162Scf00395g00004 Petunia axillaris HOM05D005932 ORTHO05D006213 5.8e-08 61.6 125 36.8
BraA09t39118Z Brassica rapa HOM05D012212 ORTHO05D006213 7.6e-08 61.2 150 37.3
Nitab4.5_0005178g0030 Nicotiana tabacum HOM05D005932 ORTHO05D006213 7.6e-08 61.2 123 31.7
MELO3C007074.2 Cucumis melo HOM05D005932 ORTHO05D006213 9.9e-08 60.8 127 36.2
Actinidia31387 Actinidia chinensis HOM05D005932 ORTHO05D006213 1.3e-07 60.5 123 38.2
FAN11G2171 Fragaria x ananassa HOM05D005932 ORTHO05D006213 1.3e-07 60.5 115 40.9
FAN21G2441 Fragaria x ananassa HOM05D005932 ORTHO05D006213 1.3e-07 60.5 115 41.7
Psat7g064920 Pisum sativum HOM05D005932 ORTHO05D006213 1.7e-07 60.1 127 36.2
AT1G30515 Arabidopsis thaliana HOM05D012212 ORTHO05D006213 2.2e-07 59.7 121 41.3
Phvul.006G128300 Phaseolus vulgaris HOM05D005932 ORTHO05D006213 2.2e-07 59.7 119 38.7
Psat1g167520 Pisum sativum HOM05D005932 ORTHO05D006213 2.2e-07 59.7 145 35.9
FvH4_3g10110 Fragaria vesca HOM05D005932 ORTHO05D006213 3.8e-07 58.9 118 43.2
RcHm_v2.0_Chr5g0016051 Rosa chinensis HOM05D005932 ORTHO05D006213 4.9e-07 58.5 126 38.1
SGA_v2.0_scaffold223G42865 Striga asiatica HOM05D005932 ORTHO05D006213 4.9e-07 58.5 115 38.3
Potri.011G095000 Populus trichocarpa HOM05D005932 ORTHO05D006213 8.4e-07 57.8 157 33.1
SalBow8G0055 Salvia bowleyana HOM05D005932 ORTHO05D006213 8.4e-07 57.8 119 36.1
Potri.001G371800 Populus trichocarpa HOM05D005932 ORTHO05D006213 1.1e-06 57.4 118 44.9
TWI38G2281 Tripterygium wilfordii HOM05D005932 ORTHO05D006213 1.1e-06 57.4 110 40.0
CsaV3_1G037320 Cucumis sativus L. HOM05D005932 ORTHO05D006213 1.4e-06 57.0 141 35.5
ClCG01G025150 Citrullus lanatus HOM05D005932 ORTHO05D006213 1.9e-06 56.6 102 38.2
ECA238G1329 Erigeron canadensis HOM05D005932 ORTHO05D006213 2.4e-06 56.2 108 37.0
SGA_v2.0_scaffold1G00270 Striga asiatica HOM05D005932 ORTHO05D006213 2.4e-06 56.2 116 37.1
Lj2P330T27 Lonicera japonica HOM05D005932 ORTHO05D006213 3.2e-06 55.8 111 36.0
Lsat_1_v5_gn_2_93200 Lactuca sativa HOM05D005932 ORTHO05D006213 4.2e-06 55.5 104 37.5
Aa31LG6G11760 Aethionema arabicum HOM05D012212 ORTHO05D006213 5.5e-06 55.1 117 38.5
Medtr2g030220 Medicago truncatula HOM05D005932 ORTHO05D006213 5.5e-06 55.1 135 38.5
Nitab4.5_0004734g0050 Nicotiana tabacum HOM05D005932 ORTHO05D006213 5.5e-06 55.1 125 31.2
Nitab4.5_0004615g0090 Nicotiana tabacum HOM05D005932 ORTHO05D006213 7.1e-06 54.7 105 35.2


User provided reference genes

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