Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp7g19740 Schrenkiella parvula HOM05D007781 ORTHO05D009769 8.7e-42 174.1 160 100.0
A08p15070 Brassica napus HOM05D007781 ORTHO05D009769 2.2e-29 132.9 160 88.1
Thhalv10026412m.g Eutrema salsugineum HOM05D007781 ORTHO05D009769 1.2e-27 127.1 170 81.8
C03p83160 Brassica napus HOM05D001541 ORTHO05D009769 3.5e-27 125.6 160 77.5
BcaC01g00689 Brassica carinata HOM05D001738 ORTHO05D001644 4.6e-27 125.2 160 78.1
BolC3t20599H Brassica oleracea HOM05D007781 ORTHO05D009769 4.6e-27 125.2 160 78.1
Aa31LG6G3610 Aethionema arabicum HOM05D007781 ORTHO05D009769 1.8e-26 123.2 107 83.2
BcaB03g11687 Brassica carinata HOM05D001738 ORTHO05D001644 2.8e-24 115.9 100 89.0
AL7G32390 Arabidopsis lyrata HOM05D000249 ORTHO05D000206 8.1e-24 114.4 161 72.7
CARHR228320 Cardamine hirsuta HOM05D007781 ORTHO05D009769 3.1e-23 112.5 108 79.6
AT4G21610 Arabidopsis thaliana HOM05D007781 ORTHO05D009769 4.0e-23 112.1 106 82.1
Carub.0007s1977 Capsella rubella HOM05D007781 ORTHO05D009769 9.0e-23 110.9 104 82.7
THA.LOC104812795 Tarenaya hassleriana HOM05D007781 ORTHO05D009769 3.4e-22 109.0 98 82.7
CiPaw.09G059400 Carya illinoinensis HOM05D007781 ORTHO05D009769 5.5e-20 101.7 105 76.2
FAN21G0375 Fragaria x ananassa HOM05D007781 ORTHO05D009769 7.1e-20 101.3 105 74.3
TPR.G12128 Trifolium pratense HOM05D007781 ORTHO05D009769 7.1e-20 101.3 91 86.8
FAN16G0963 Fragaria x ananassa HOM05D007781 ORTHO05D009769 1.2e-19 100.5 95 78.9
FvH4_3g09310 Fragaria vesca HOM05D007781 ORTHO05D009769 1.6e-19 100.1 105 73.3
FAN11G2776 Fragaria x ananassa HOM05D007781 ORTHO05D009769 1.6e-19 100.1 105 73.3
Lj4g0009430 Lotus japonicus HOM05D007781 ORTHO05D009769 7.9e-19 97.8 87 86.2
MD05G1313200 Malus domestica HOM05D007781 ORTHO05D009769 1.0e-18 97.4 90 83.3
Ciclev10017149m.g Citrus clementina HOM05D007781 ORTHO05D009769 1.3e-18 97.1 86 84.9
Glyma.07G196200 Glycine max HOM05D007781 ORTHO05D009769 1.3e-18 97.1 91 83.5
MD10G1295400 Malus domestica HOM05D007781 ORTHO05D009769 1.3e-18 97.1 104 75.0
Prupe.4G046600 Prunus persica HOM05D007781 ORTHO05D009769 2.3e-18 96.3 104 76.9
Psat7g113680 Pisum sativum HOM05D007781 ORTHO05D009769 3.9e-18 95.5 101 74.3
RcHm_v2.0_Chr5g0008291 Rosa chinensis HOM05D007781 ORTHO05D009769 6.7e-18 94.7 100 72.0
Thecc.06G188400 Theobroma cacao HOM05D007781 ORTHO05D009769 8.7e-18 94.4 96 74.0
Gorai.009G169900 Gossypium raimondii HOM05D007781 ORTHO05D009769 1.1e-17 94.0 99 70.7
TAR627G0113 Trochodendron aralioides HOM05D007781 ORTHO05D009769 1.1e-17 94.0 88 83.0
GSVIVG01003209001 Vitis vinifera HOM05D007781 ORTHO05D009769 1.5e-17 93.6 104 74.0
Gohir.A05G161900 Gossypium hirsutum HOM05D007781 ORTHO05D009769 1.9e-17 93.2 96 72.9
Gohir.D05G164700 Gossypium hirsutum HOM05D007781 ORTHO05D009769 1.9e-17 93.2 96 72.9
Duzib235G1462 Durio zibethinus HOM05D007781 ORTHO05D009769 7.4e-17 91.3 88 78.4
Dinv40553 Davidia involucrata HOM05D007781 ORTHO05D009769 1.6e-16 90.1 88 80.7
Phvul.002G234100 Phaseolus vulgaris HOM05D007781 ORTHO05D009769 1.6e-16 90.1 85 81.2
PGR042G1810 Punica granatum HOM05D007781 ORTHO05D009769 4.8e-16 88.6 102 75.5
COL.COLO4_31480 Corchorus olitorius HOM05D007781 ORTHO05D009769 8.2e-16 87.8 89 70.8
CDE10G1000 Ceratophyllum demersum HOM05D007781 ORTHO05D009769 1.1e-15 87.4 91 79.1
Hma1.2p1_0126F.1_g059410 Hydrangea macrophylla HOM05D007781 ORTHO05D009769 1.8e-15 86.7 98 72.4
Nn1g06568 Nelumbo nucifera HOM05D007781 ORTHO05D009769 1.8e-15 86.7 97 76.3
VMungo0251G3178 Vigna mungo HOM05D007781 ORTHO05D009769 2.4e-15 86.3 85 77.6
Potri.004G043100 Populus trichocarpa HOM05D007781 ORTHO05D009769 3.1e-15 85.9 94 74.5
Sabra04G0026700 Salix brachista HOM05D007781 ORTHO05D009769 4.0e-15 85.5 93 74.2
Sc17g0006220 Simmondsia chinensis HOM05D007781 ORTHO05D009769 6.9e-15 84.7 100 73.0
CANSAT35G1759 Cannabis sativa HOM05D007781 ORTHO05D009769 9.0e-15 84.3 88 78.4
DCAR_028076 Daucus carota HOM05D007781 ORTHO05D009769 1.2e-14 84.0 59 71.2
Eucgr.E03314 Eucalyptus grandis HOM05D007781 ORTHO05D009769 1.5e-14 83.6 94 73.4
Sed0016416 Sechium edule HOM05D007781 ORTHO05D009769 1.5e-14 83.6 86 80.2
Haze_06475 Corylus avellana HOM05D007781 ORTHO05D009769 2.6e-14 82.8 90 75.6
Manes.16G027000 Manihot esculenta HOM05D007781 ORTHO05D009769 7.6e-14 81.3 97 71.1
CAN.G1164.27 Capsicum annuum HOM05D007781 ORTHO05D009769 1.7e-13 80.1 97 73.2
ClCG03G006020 Citrullus lanatus HOM05D007781 ORTHO05D009769 1.7e-13 80.1 86 77.9
CsaV3_1G012280 Cucumis sativus L. HOM05D007781 ORTHO05D009769 1.7e-13 80.1 86 76.7
PGSC0003DMG400029720 Solanum tuberosum HOM05D007781 ORTHO05D009769 4.9e-13 78.6 97 72.2
HPP92_027869 Vanilla planifolia HOM05D007781 ORTHO05D009769 6.5e-13 78.2 90 71.1
MELO3C002600.2 Cucumis melo HOM05D007781 ORTHO05D009769 8.4e-13 77.8 86 76.7
Nitab4.5_0003432g0040 Nicotiana tabacum HOM05D007781 ORTHO05D009769 8.4e-13 77.8 97 70.1
Hund21227 Selenicereus undatus HOM05D007781 ORTHO05D009769 8.4e-13 77.8 92 76.1
Nitab4.5_0007940g0030 Nicotiana tabacum HOM05D007781 ORTHO05D009769 1.1e-12 77.4 97 70.1
Actinidia05631 Actinidia chinensis HOM05D007781 ORTHO05D009769 1.4e-12 77.0 87 80.5
Medtr4g088850 Medicago truncatula HOM05D007781 ORTHO05D009769 1.4e-12 77.0 38 92.1
arahy.Tifrunner.gnm1.ann1.KV0YZV Arachis hypogaea HOM05D007781 ORTHO05D009769 2.5e-12 76.3 87 77.0
arahy.Tifrunner.gnm1.ann1.QC0LUE Arachis hypogaea HOM05D007781 ORTHO05D009769 2.5e-12 76.3 87 77.0
CDE10G0168 Ceratophyllum demersum HOM05D007781 ORTHO05D009769 4.2e-12 75.5 44 75.0
Cc02_g13310 Coffea canephora HOM05D007781 ORTHO05D009769 4.2e-12 75.5 85 80.0
Sopen02g023130 Solanum pennellii HOM05D007781 ORTHO05D009769 4.2e-12 75.5 97 71.1
PSO541G0656 Papaver somniferum HOM05D007781 ORTHO05D009769 9.3e-12 74.3 94 68.1
PSO675G6168 Papaver somniferum HOM05D007781 ORTHO05D009769 2.1e-11 73.2 94 68.1
Solyc02g078270.3 Solanum lycopersicum HOM05D007781 ORTHO05D009769 3.5e-11 72.4 97 69.1
Ah.14g089440 Amaranthus hybridus HOM05D007781 ORTHO05D009769 4.6e-11 72.0 41 73.2
Oeu053970.1 Olea europaea HOM05D007781 ORTHO05D009769 4.6e-11 72.0 85 72.9
TWI38G0207 Tripterygium wilfordii HOM05D007781 ORTHO05D009769 7.9e-11 71.2 41 75.6
Peaxi162Scf00736g00429 Petunia axillaris HOM05D007781 ORTHO05D009769 1.3e-10 70.5 50 66.0
Lalb_Chr16g0383721 Lupinus albus HOM05D007781 ORTHO05D009769 3.0e-10 69.3 93 68.8
Lsat_1_v5_gn_7_21141 Lactuca sativa HOM05D007781 ORTHO05D009769 6.7e-10 68.2 100 64.0
Os01g0612700 Oryza sativa ssp. japonica HOM05D021202 ORTHO05D009769 8.7e-10 67.8 93 69.9
MSTRG.14698 Avicennia marina HOM05D007781 ORTHO05D009769 2.5e-09 66.2 85 71.8
CSS0040858 Camellia sinensis var. sinensis HOM05D007781 ORTHO05D009769 1.6e-08 63.5 39 69.2
ECA236G0601 Erigeron canadensis HOM05D007781 ORTHO05D009769 1.6e-08 63.5 36 75.0
SHI01775 Sapria himalayana HOM05D007781 ORTHO05D009769 1.6e-08 63.5 40 72.5
SGA_v2.0_scaffold49G18292 Striga asiatica HOM05D007781 ORTHO05D009769 1.6e-08 63.5 83 69.9
Aqoxy1G02434 Aquilegia oxysepala HOM05D007781 ORTHO05D009769 3.7e-08 62.4 85 71.8
Gohir.A11G117400 Gossypium hirsutum HOM05D007781 ORTHO05D009769 3.7e-08 62.4 39 66.7
HanXRQChr04g0124061 Helianthus annuus HOM05D007781 ORTHO05D009769 4.8e-08 62.0 36 72.2
Sed0017721 Sechium edule HOM05D007781 ORTHO05D009769 8.2e-08 61.2 40 70.0
vmacro00338 Vaccinium macrocarpon HOM05D007781 ORTHO05D002106 8.2e-08 61.2 52 57.7
Migut.H01490 Erythranthe guttata HOM05D007781 ORTHO05D009769 1.1e-07 60.8 83 68.7
vmacro14163 Vaccinium macrocarpon HOM05D007781 ORTHO05D009769 1.4e-07 60.5 40 67.5
Nitab4.5_0000378g0080 Nicotiana tabacum HOM05D002138 ORTHO05D002106 1.2e-06 57.4 34 67.6
Nitab4.5_0001298g0030 Nicotiana tabacum HOM05D002138 ORTHO05D002106 1.2e-06 57.4 34 67.6
BcaC09g51342 Brassica carinata HOM05D002138 ORTHO05D002106 3.4e-06 55.8 34 67.6
C01p14370 Brassica napus HOM05D002138 ORTHO05D002106 3.4e-06 55.8 34 67.6
BolC1t01395H Brassica oleracea HOM05D002138 ORTHO05D002106 3.4e-06 55.8 34 67.6
BolC7t45586H Brassica oleracea HOM05D002138 ORTHO05D002106 3.4e-06 55.8 34 67.6
DCAR_008280 Daucus carota HOM05D002138 ORTHO05D002106 3.4e-06 55.8 47 57.4
Aa31LG6G2770 Aethionema arabicum HOM05D002138 ORTHO05D002106 4.5e-06 55.5 34 64.7
A08p14830 Brassica napus HOM05D002138 ORTHO05D002106 4.5e-06 55.5 46 54.3
MELO3C007039.2 Cucumis melo HOM05D002138 ORTHO05D002106 4.5e-06 55.5 39 61.5
Thhalv10026533m.g Eutrema salsugineum HOM05D002138 ORTHO05D002106 4.5e-06 55.5 39 61.5
unitig_744.g24534 Utricularia gibba HOM05D007781 ORTHO05D009769 4.5e-06 55.5 85 63.5
HanXRQChr12g0358431 Helianthus annuus HOM05D002138 ORTHO05D002106 5.9e-06 55.1 40 60.0
TAR627G0773 Trochodendron aralioides HOM05D002138 ORTHO05D002106 7.7e-06 54.7 41 56.1
TAR075G0006 Trochodendron aralioides HOM05D007781 ORTHO05D002106 1.0e-05 54.3 39 61.5


User provided reference genes

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