Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp7g19300 Schrenkiella parvula HOM05D004835 ORTHO05D006046 4.0e-221 771.2 399 100.0
AL7G32900 Arabidopsis lyrata HOM05D004835 ORTHO05D006046 2.0e-196 689.1 404 89.6
Thhalv10025354m.g Eutrema salsugineum HOM05D004835 ORTHO05D006046 1.1e-194 683.3 405 88.1
A01p12580 Brassica napus HOM05D004835 ORTHO05D006046 2.4e-194 682.2 400 88.8
AT4G21210 Arabidopsis thaliana HOM05D004835 ORTHO05D006046 7.8e-193 677.2 404 88.4
BcaNung03833 Brassica carinata HOM05D004835 ORTHO05D006046 8.7e-192 673.7 401 88.8
BraA01t01201Z Brassica rapa HOM05D004835 ORTHO05D006046 2.5e-191 672.2 400 88.0
C01p15150 Brassica napus HOM05D004835 ORTHO05D006046 2.1e-190 669.1 400 88.2
BolC1t01464H Brassica oleracea HOM05D004835 ORTHO05D006046 2.8e-190 668.7 400 88.0
BcaC09g51244 Brassica carinata HOM05D004835 ORTHO05D006046 5.3e-189 664.5 400 87.8
Carub.0007s2021 Capsella rubella HOM05D004835 ORTHO05D006046 3.8e-187 658.3 404 86.4
CARHR227800 Cardamine hirsuta HOM05D004835 ORTHO05D006046 3.8e-187 658.3 403 86.4
Aa31LG6G3230 Aethionema arabicum HOM05D004835 ORTHO05D006046 2.4e-173 612.5 405 81.0
THA.LOC104812524 Tarenaya hassleriana HOM05D004835 ORTHO05D006046 2.8e-150 535.8 403 71.7
TAR626G1121 Trochodendron aralioides HOM05D004835 ORTHO05D006046 9.4e-130 467.6 401 63.3
Atru.chr10.2145 Acer truncatum HOM05D004835 ORTHO05D006046 8.0e-129 464.5 375 65.6
CiPaw.10G068200 Carya illinoinensis HOM05D004835 ORTHO05D006046 9.8e-127 457.6 394 64.0
QL05p075217 Quercus lobata HOM05D004835 ORTHO05D006046 1.3e-126 457.2 397 61.7
Hma1.2p1_0091F.1_g046150 Hydrangea macrophylla HOM05D004835 ORTHO05D006046 4.9e-126 455.3 407 61.9
PGR004G0955 Punica granatum HOM05D004835 ORTHO05D006046 4.9e-126 455.3 388 61.6
Actinidia26949 Actinidia chinensis HOM05D004835 ORTHO05D006046 6.3e-126 454.9 389 61.7
vmacro03709 Vaccinium macrocarpon HOM05D004835 ORTHO05D006046 8.3e-126 454.5 398 62.1
Sabra04G0012600 Salix brachista HOM05D004835 ORTHO05D006046 1.4e-125 453.8 394 62.4
Lj1A1224G37 Lonicera japonica HOM05D004835 ORTHO05D006046 3.1e-125 452.6 401 62.3
Gohir.A06G145700 Gossypium hirsutum HOM05D004835 ORTHO05D006046 5.4e-125 451.8 389 61.2
Gorai.010G176900 Gossypium raimondii HOM05D004835 ORTHO05D006046 1.2e-124 450.7 398 60.8
arahy.Tifrunner.gnm1.ann1.06HJR7 Arachis hypogaea HOM05D004835 ORTHO05D006046 2.7e-124 449.5 373 62.5
Rhsim13G0157800 Rhododendron simsii HOM05D004835 ORTHO05D006046 2.7e-124 449.5 392 61.7
arahy.Tifrunner.gnm1.ann1.P6UBAG Arachis hypogaea HOM05D004835 ORTHO05D006046 3.5e-124 449.1 373 62.7
Lj5g0006944 Lotus japonicus HOM05D004835 ORTHO05D006046 4.5e-124 448.7 353 63.5
Prupe.4G026400 Prunus persica HOM05D004835 ORTHO05D006046 4.5e-124 448.7 374 62.8
Thecc.06G213800 Theobroma cacao HOM05D004835 ORTHO05D006046 5.9e-124 448.4 381 62.7
Potri.004G022900 Populus trichocarpa HOM05D004835 ORTHO05D006046 1.0e-123 447.6 394 62.2
Cpa.g.sc198.3 Carica papaya HOM05D004835 ORTHO05D006046 1.3e-123 447.2 394 60.9
Glyma.10G252300 Glycine max HOM05D004835 ORTHO05D006046 1.7e-123 446.8 355 65.6
Eucgr.D00815 Eucalyptus grandis HOM05D004835 ORTHO05D006046 6.6e-123 444.9 411 58.9
RcHm_v2.0_Chr5g0004011 Rosa chinensis HOM05D004835 ORTHO05D006046 2.5e-122 443.0 370 63.2
ClCG03G004990 Citrullus lanatus HOM05D004835 ORTHO05D006046 3.3e-122 442.6 382 60.7
Glyma.20G141100 Glycine max HOM05D004835 ORTHO05D006046 4.2e-122 442.2 355 64.5
FvH4_3g02680 Fragaria vesca HOM05D004835 ORTHO05D006046 7.2e-122 441.4 366 63.1
FAN25G1333 Fragaria x ananassa HOM05D004835 ORTHO05D006046 7.2e-122 441.4 366 63.1
Lalb_Chr02g0144591 Lupinus albus HOM05D004835 ORTHO05D006046 9.5e-122 441.0 363 62.5
COL.COLO4_31722 Corchorus olitorius HOM05D004835 ORTHO05D006046 1.2e-121 440.7 388 60.8
CSS0008490 Camellia sinensis var. sinensis HOM05D004835 ORTHO05D006046 1.6e-121 440.3 387 61.2
Nn1g07024 Nelumbo nucifera HOM05D004835 ORTHO05D006046 2.1e-121 439.9 371 62.3
MD05G1340900 Malus domestica HOM05D004835 ORTHO05D006046 4.7e-121 438.7 397 59.9
Sopen10g001360 Solanum pennellii HOM05D004835 ORTHO05D006046 4.7e-121 438.7 389 60.2
Manes.16G012700 Manihot esculenta HOM05D004835 ORTHO05D006046 6.1e-121 438.3 374 62.8
Haze_06733 Corylus avellana HOM05D004835 ORTHO05D006046 1.4e-120 437.2 384 61.5
Oeu030985.2 Olea europaea HOM05D004835 ORTHO05D006046 1.4e-120 437.2 423 58.9
Solyc10g005370.3 Solanum lycopersicum HOM05D004835 ORTHO05D006046 1.4e-120 437.2 389 60.2
Hund21377 Selenicereus undatus HOM05D004835 ORTHO05D006046 1.8e-120 436.8 356 63.5
Phvul.007G051900 Phaseolus vulgaris HOM05D004835 ORTHO05D006046 2.3e-120 436.4 353 63.7
Ca_10985_v3 Cicer arietinum L. HOM05D004835 ORTHO05D006046 3.0e-120 436.0 382 60.5
Ca_11005_v3 Cicer arietinum L. HOM05D004835 ORTHO05D006046 3.0e-120 436.0 382 60.5
MBI02_g10099_MAGBIO Magnolia biondii HOM05D004835 ORTHO05D006046 3.0e-120 436.0 409 57.9
Cfa000278 Carpinus fangiana HOM05D004835 ORTHO05D006046 5.2e-120 435.3 424 57.1
CsaV3_1G011070 Cucumis sativus L. HOM05D004835 ORTHO05D006046 5.2e-120 435.3 390 61.3
Haze_06737 Corylus avellana HOM05D004835 ORTHO05D006046 6.8e-120 434.9 427 57.1
PGSC0003DMG400011280 Solanum tuberosum HOM05D004835 ORTHO05D006046 8.9e-120 434.5 364 62.1
DCAR_008123 Daucus carota HOM05D004835 ORTHO05D006046 1.2e-119 434.1 385 60.0
MELO3C002484.2 Cucumis melo HOM05D004835 ORTHO05D006046 2.0e-119 433.3 397 60.2
ATR0762G046 Amborella trichopoda HOM05D004835 ORTHO05D006046 2.6e-119 433.0 366 62.0
Ciclev10015558m.g Citrus clementina HOM05D004835 ORTHO05D006046 3.4e-119 432.6 390 60.8
TWI63G0472 Tripterygium wilfordii HOM05D004835 ORTHO05D006046 4.4e-119 432.2 370 62.4
VMungo0720G3178 Vigna mungo HOM05D004835 ORTHO05D006046 4.4e-119 432.2 353 62.6
HanXRQChr05g0130051 Helianthus annuus HOM05D004835 ORTHO05D006046 7.5e-119 431.4 403 59.1
PSO675G0743 Papaver somniferum HOM05D004835 ORTHO05D006046 1.3e-118 430.6 374 62.0
Nitab4.5_0003738g0050 Nicotiana tabacum HOM05D004835 ORTHO05D006046 2.2e-118 429.9 390 60.3
ECA236G4143 Erigeron canadensis HOM05D004835 ORTHO05D006046 2.9e-118 429.5 403 57.8
Aqoxy4G01996 Aquilegia oxysepala HOM05D004835 ORTHO05D006046 3.7e-118 429.1 366 62.0
CANSAT56G3094 Cannabis sativa HOM05D004835 ORTHO05D006046 3.7e-118 429.1 395 60.0
Ah.09g235350 Amaranthus hybridus HOM05D004835 ORTHO05D006046 8.3e-118 427.9 387 58.9
Medtr1g105545 Medicago truncatula HOM05D004835 ORTHO05D006046 8.3e-118 427.9 389 60.2
EL10Ac8g19899 Beta vulgaris HOM05D004835 ORTHO05D006046 1.1e-117 427.6 382 58.1
Lsat_1_v5_gn_7_16981 Lactuca sativa HOM05D004835 ORTHO05D006046 1.8e-117 426.8 410 58.0
Psat6g210360 Pisum sativum HOM05D004835 ORTHO05D006046 2.4e-117 426.4 379 60.7
AUR62022016 Chenopodium quinoa HOM05D004835 ORTHO05D006046 3.2e-117 426.0 367 61.0
Sc05g0008870 Simmondsia chinensis HOM05D004835 ORTHO05D006046 3.2e-117 426.0 360 61.4
Nitab4.5_0006795g0010 Nicotiana tabacum HOM05D004835 ORTHO05D006046 4.1e-117 425.6 390 59.7
THA.LOC104821035 Tarenaya hassleriana HOM05D004835 ORTHO05D006046 1.6e-116 423.7 385 60.0
Gohir.D06G151600 Gossypium hirsutum HOM05D004835 ORTHO05D006046 2.0e-116 423.3 398 58.5
Sed0001374 Sechium edule HOM05D004835 ORTHO05D006046 2.3e-115 419.9 419 55.1
Dinv17835 Davidia involucrata HOM05D004835 ORTHO05D006046 6.6e-115 418.3 287 72.8
GSVIVG01012626001 Vitis vinifera HOM05D004835 ORTHO05D006046 6.6e-115 418.3 287 71.8
SGA_v2.0_scaffold49G18268 Striga asiatica HOM05D004835 ORTHO05D006046 1.1e-114 417.5 348 63.5
CDE05G0674 Ceratophyllum demersum HOM05D004835 ORTHO05D006046 7.3e-114 414.8 403 56.1
Thhalv10020923m.g Eutrema salsugineum HOM05D004835 ORTHO05D006046 2.8e-113 412.9 391 59.3
Duzib235G1297 Durio zibethinus HOM05D004835 ORTHO05D006046 4.7e-113 412.1 383 59.3
CAN.G105.1 Capsicum annuum HOM05D004835 ORTHO05D006046 6.2e-113 411.8 402 57.5
Sp3g00900 Schrenkiella parvula HOM05D004835 ORTHO05D006046 1.4e-112 410.6 385 58.7
MSTRG.13160 Avicennia marina HOM05D004835 ORTHO05D006046 2.3e-112 409.8 414 55.1
Cc00_g17920 Coffea canephora HOM05D004835 ORTHO05D006046 2.3e-112 409.8 287 70.7
Zm00001eb323140 Zea mays HOM05D004835 ORTHO05D006046 8.9e-112 407.9 399 54.6
Migut.H01551 Erythranthe guttata HOM05D004835 ORTHO05D006046 4.9e-110 402.1 404 57.4
PSO541G2305 Papaver somniferum HOM05D004835 ORTHO05D006046 4.9e-110 402.1 404 56.9
HPP92_010092 Vanilla planifolia HOM05D004835 ORTHO05D006046 6.4e-110 401.7 375 57.9
Os07g0530600 Oryza sativa ssp. japonica HOM05D004835 ORTHO05D006046 3.2e-109 399.4 360 59.7
Carub.0003s0094 Capsella rubella HOM05D004835 ORTHO05D006046 5.4e-109 398.7 373 59.5
Zm00001eb106240 Zea mays HOM05D004835 ORTHO05D006046 5.4e-109 398.7 393 55.2
C09p75340 Brassica napus HOM05D004835 ORTHO05D006046 2.7e-108 396.4 367 59.7
BolC5t35125H Brassica oleracea HOM05D004835 ORTHO05D006046 2.7e-108 396.4 367 59.7
CARHR075840 Cardamine hirsuta HOM05D004835 ORTHO05D006046 2.7e-108 396.4 352 61.1
SalBow1G4699 Salvia bowleyana HOM05D004835 ORTHO05D006046 2.7e-108 396.4 305 65.9
AL3G11040 Arabidopsis lyrata HOM05D004835 ORTHO05D006046 6.0e-108 395.2 383 58.7
MSTRG.14649 Avicennia marina HOM05D004835 ORTHO05D006046 1.3e-107 394.0 421 52.3
AT3G01200 Arabidopsis thaliana HOM05D004835 ORTHO05D006046 1.7e-107 393.7 387 57.6
BcaC05g30485 Brassica carinata HOM05D004835 ORTHO05D006046 2.3e-107 393.3 367 59.4
A05p44760 Brassica napus HOM05D004835 ORTHO05D006046 3.9e-107 392.5 368 59.2
BraA05t23181Z Brassica rapa HOM05D004835 ORTHO05D006046 3.9e-107 392.5 368 59.2
BcaC05g30395 Brassica carinata HOM05D004835 ORTHO05D006046 5.0e-107 392.1 367 59.1
BraA01t04644Z Brassica rapa HOM05D004835 ORTHO05D006046 1.5e-106 390.6 377 59.2
unitig_26.g9396 Utricularia gibba HOM05D004835 ORTHO05D006046 1.9e-106 390.2 390 55.4
BNapus_Darmor_BZH_scaffold_113p00010 Brassica napus HOM05D004835 ORTHO05D006046 4.3e-106 389.0 377 58.9
unitig_749.g13624 Utricularia gibba HOM05D004835 ORTHO05D006046 7.3e-106 388.3 359 56.8
BNapus_Darmor_BZH_scaffold_97p00190 Brassica napus HOM05D004835 ORTHO05D006046 1.6e-105 387.1 377 58.6
BolC1t05939H Brassica oleracea HOM05D004835 ORTHO05D006046 4.7e-105 385.6 374 58.3
Hund23515 Selenicereus undatus HOM05D004835 ORTHO05D006046 4.7e-105 385.6 328 61.0
ECA248G0073 Erigeron canadensis HOM05D004835 ORTHO05D006046 1.1e-104 384.4 371 56.6
Lsat_1_v5_gn_1_125320 Lactuca sativa HOM05D004835 ORTHO05D006046 6.8e-104 381.7 401 55.1
BcaC09g47670 Brassica carinata HOM05D004835 ORTHO05D006046 1.2e-103 380.9 367 58.3
BcaB04g21426 Brassica carinata HOM05D004835 ORTHO05D006046 4.4e-103 379.0 368 57.6
Nn1g03640 Nelumbo nucifera HOM05D004835 ORTHO05D006046 1.3e-102 377.5 368 57.6
Pp3c11_19190 Physcomitrium patens HOM05D004835 ORTHO05D006046 1.3e-102 377.5 353 53.5
Cpa.g.sc198.4 Carica papaya HOM05D004835 ORTHO05D006046 4.9e-102 375.6 286 66.1
HanXRQChr01g0002521 Helianthus annuus HOM05D004835 ORTHO05D006046 1.4e-101 374.0 358 56.1
Peaxi162Scf00678g00310 Petunia axillaris HOM05D004835 ORTHO05D006046 9.2e-101 371.3 389 54.5
SMO147G0180 Selaginella moellendorffii HOM05D004835 ORTHO05D006046 1.0e-99 367.9 290 60.0
Mapoly0141s0024 Marchantia polymorpha HOM05D004835 ORTHO05D006046 6.6e-99 365.2 365 53.7
SEGI_26962 Sequoiadendron giganteum HOM05D004835 ORTHO05D006046 6.6e-99 365.2 399 51.9
Lj2A274G58 Lonicera japonica HOM05D004835 ORTHO05D006046 6.8e-96 355.1 359 56.0
CSS0001434 Camellia sinensis var. sinensis HOM05D004835 ORTHO05D006046 3.6e-89 332.8 307 60.6
CBR_g38977 Chara braunii HOM05D004835 ORTHO05D006046 6.2e-89 332.0 417 47.5
FAN21G1397 Fragaria x ananassa HOM05D004835 ORTHO05D006046 8.1e-89 331.6 285 61.4
TPR.G5518 Trifolium pratense HOM05D004835 ORTHO05D006046 7.6e-87 325.1 368 50.3
AagrBONN_evm.TU.Sc2ySwM_368.2632 Anthoceros agrestis HOM05D004835 ORTHO05D006046 1.1e-85 321.2 351 49.6
Aa31LG5G12420 Aethionema arabicum HOM05D004835 ORTHO05D006046 4.2e-85 319.3 251 65.3
HPP92_010083 Vanilla planifolia HOM05D004835 ORTHO05D006046 1.5e-82 310.8 247 63.2
Dinv20014 Davidia involucrata HOM05D004835 ORTHO05D006046 2.3e-67 260.4 197 65.5
MCO14G521 Micromonas commoda HOM05D004835 ORTHO05D006046 7.4e-58 228.8 295 42.7
Cre12.g514600 Chlamydomonas reinhardtii HOM05D004835 ORTHO05D006046 6.3e-57 225.7 296 40.2
BolC1t05935H Brassica oleracea HOM05D004835 ORTHO05D006046 4.6e-52 209.5 171 63.2
BNapus_Darmor_BZH_scaffold_97p00140 Brassica napus HOM05D004835 ORTHO05D006046 1.3e-51 208.0 155 65.8
TPR.G4570 Trifolium pratense HOM05D004835 ORTHO05D006046 1.5e-39 167.9 256 40.6
MD10G1314400 Malus domestica HOM05D004835 ORTHO05D006046 9.4e-29 132.1 246 36.6
BolC1t05929H Brassica oleracea HOM05D004835 ORTHO05D006046 5.7e-26 122.9 189 40.7
CANSAT64G1413 Cannabis sativa HOM05D004835 ORTHO05D006046 5.9e-23 112.8 174 41.4
Actinidia05534 Actinidia chinensis HOM05D000018 ORTHO05D001766 9.4e-21 105.5 110 54.5
Ca_29404_v3 Cicer arietinum L. HOM05D004835 ORTHO05D148401 3.0e-19 100.5 280 27.5
Aa31LG5G12410 Aethionema arabicum HOM05D004835 ORTHO05D038187 4.1e-16 90.1 140 46.4
BolC5t35131H Brassica oleracea HOM05D004835 ORTHO05D038187 2.0e-15 87.8 53 77.4
Dinv20013 Davidia involucrata HOM05D004835 ORTHO05D006046 1.7e-14 84.7 69 59.4
QL10p027838 Quercus lobata HOM05D004835 ORTHO05D337120 9.8e-10 68.9 147 36.1


User provided reference genes

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