Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp7g18020 Schrenkiella parvula HOM05D007311 ORTHO05D009011 2.4e-78 295.4 148 100.0
BcaC09g51414 Brassica carinata HOM05D007311 ORTHO05D009011 2.1e-74 282.3 148 93.9
CARHR226190 Cardamine hirsuta HOM05D007311 ORTHO05D009011 2.7e-74 282.0 148 93.9
BraA01t01079Z Brassica rapa HOM05D007311 ORTHO05D009011 7.9e-74 280.4 148 92.6
C01p13360 Brassica napus HOM05D007311 ORTHO05D009011 1.0e-73 280.0 148 93.2
A01p11360 Brassica napus HOM05D000351 ORTHO05D009011 1.8e-73 279.3 148 91.9
Carub.0007s2183 Capsella rubella HOM05D007311 ORTHO05D009011 1.8e-73 279.3 149 92.6
Thhalv10024796m.g Eutrema salsugineum HOM05D000351 ORTHO05D009011 2.3e-73 278.9 148 93.2
AT4G19400 Arabidopsis thaliana HOM05D007311 ORTHO05D009011 3.9e-73 278.1 149 92.6
AT4G19410 Arabidopsis thaliana HOM05D000351 ORTHO05D009011 3.9e-73 278.1 149 92.6
AL7G34740 Arabidopsis lyrata HOM05D007311 ORTHO05D009011 4.4e-72 274.6 149 91.3
BcaNung01781 Brassica carinata HOM05D007311 ORTHO05D009011 1.7e-71 272.7 148 90.5
THA.LOC104811225 Tarenaya hassleriana HOM05D007311 ORTHO05D009011 1.7e-68 262.7 148 86.5
Aa31LG6G2000 Aethionema arabicum HOM05D007311 ORTHO05D009011 3.3e-64 248.4 148 79.1
Lalb_Chr15g0076111 Lupinus albus HOM05D007311 ORTHO05D009011 8.8e-57 223.8 148 70.9
Glyma.19G247100 Glycine max HOM05D007311 ORTHO05D009011 2.0e-56 222.6 148 70.9
Glyma.03G249600 Glycine max HOM05D007311 ORTHO05D009011 3.3e-56 221.9 148 69.6
arahy.Tifrunner.gnm1.ann1.C28JQA Arachis hypogaea HOM05D007311 ORTHO05D009011 7.5e-56 220.7 148 70.3
arahy.Tifrunner.gnm1.ann1.M0M2WX Arachis hypogaea HOM05D007311 ORTHO05D009011 7.5e-56 220.7 148 70.3
PGR031G0344 Punica granatum HOM05D007311 ORTHO05D009011 1.3e-55 219.9 148 68.9
QL12p002522 Quercus lobata HOM05D007311 ORTHO05D009011 1.3e-55 219.9 147 70.1
Phvul.006G104200 Phaseolus vulgaris HOM05D007311 ORTHO05D009011 2.2e-55 219.2 148 70.9
CiPaw.11G077300 Carya illinoinensis HOM05D007311 ORTHO05D009011 3.7e-55 218.4 148 69.6
RcHm_v2.0_Chr7g0214961 Rosa chinensis HOM05D007311 ORTHO05D009011 3.7e-55 218.4 148 70.3
TWI32G0505 Tripterygium wilfordii HOM05D007311 ORTHO05D009011 3.7e-55 218.4 148 68.9
GSVIVG01036913001 Vitis vinifera HOM05D007311 ORTHO05D009011 4.8e-55 218.0 148 68.2
AUR62039076 Chenopodium quinoa HOM05D007311 ORTHO05D009011 8.2e-55 217.2 148 71.6
VMungo0540G0453 Vigna mungo HOM05D007311 ORTHO05D009011 8.2e-55 217.2 148 70.3
Ca_09529_v3 Cicer arietinum L. HOM05D007311 ORTHO05D009011 1.8e-54 216.1 148 70.9
Lj1g0003439 Lotus japonicus HOM05D007311 ORTHO05D009011 1.8e-54 216.1 148 68.9
FAN08G0573 Fragaria x ananassa HOM05D007311 ORTHO05D009011 2.4e-54 215.7 144 70.8
Aqoxy102s011 Aquilegia oxysepala HOM05D007311 ORTHO05D009011 4.1e-54 214.9 148 68.2
Aqoxy2G03516 Aquilegia oxysepala HOM05D007311 ORTHO05D009011 4.1e-54 214.9 148 68.2
Psat0s3161g0160 Pisum sativum HOM05D007311 ORTHO05D009011 5.3e-54 214.5 148 70.9
Prupe.5G015700 Prunus persica HOM05D007311 ORTHO05D009011 2.0e-53 212.6 148 69.6
MD16G1286900 Malus domestica HOM05D007311 ORTHO05D009011 2.7e-53 212.2 148 68.2
TPR.G7011 Trifolium pratense HOM05D007311 ORTHO05D009011 2.7e-53 212.2 148 68.2
Nn3g18546 Nelumbo nucifera HOM05D007311 ORTHO05D009011 7.7e-53 210.7 147 69.4
Cfa012633 Carpinus fangiana HOM05D007311 ORTHO05D009011 1.7e-52 209.5 141 68.8
Manes.15G187600 Manihot esculenta HOM05D007311 ORTHO05D009011 1.7e-52 209.5 148 66.9
COL.COLO4_16729 Corchorus olitorius HOM05D007311 ORTHO05D009011 2.2e-52 209.1 148 64.9
Gohir.D08G169100 Gossypium hirsutum HOM05D007311 ORTHO05D009011 2.2e-52 209.1 148 65.5
Sed0011898 Sechium edule HOM05D000351 ORTHO05D000250 2.9e-52 208.8 148 65.5
MSTRG.1753 Avicennia marina HOM05D007311 ORTHO05D009011 3.8e-52 208.4 148 67.6
Duzib205G2009 Durio zibethinus HOM05D007311 ORTHO05D009011 3.8e-52 208.4 148 64.9
EL10Ac9g22274 Beta vulgaris HOM05D007311 ORTHO05D009011 6.5e-52 207.6 148 68.2
CsaV3_4G007060 Cucumis sativus L. HOM05D007311 ORTHO05D009011 6.5e-52 207.6 148 64.9
Ciclev10002031m.g Citrus clementina HOM05D007311 ORTHO05D009011 1.1e-51 206.8 148 66.9
ClCG07G011190 Citrullus lanatus HOM05D000351 ORTHO05D000250 2.5e-51 205.7 148 64.2
DCAR_030948 Daucus carota HOM05D007311 ORTHO05D009011 2.5e-51 205.7 148 68.2
MELO3C016211.2 Cucumis melo HOM05D007311 ORTHO05D009011 3.2e-51 205.3 148 64.2
Lsat_1_v5_gn_9_12020 Lactuca sativa HOM05D007311 ORTHO05D009011 4.2e-51 204.9 148 63.5
FAN18G0784 Fragaria x ananassa HOM05D007311 ORTHO05D009011 5.5e-51 204.5 172 59.3
Medtr7g115450 Medicago truncatula HOM05D007311 ORTHO05D009011 7.2e-51 204.1 148 66.2
Medtr7g115470 Medicago truncatula HOM05D007311 ORTHO05D009011 7.2e-51 204.1 148 66.2
Hma1.2p1_0294F.1_g116450 Hydrangea macrophylla HOM05D007311 ORTHO05D009011 1.2e-50 203.4 145 67.6
Peaxi162Scf00330g01216 Petunia axillaris HOM05D007311 ORTHO05D009011 1.6e-50 203.0 146 64.4
SalBow3G0367 Salvia bowleyana HOM05D007311 ORTHO05D009011 2.1e-50 202.6 148 65.5
Gohir.A08G147900 Gossypium hirsutum HOM05D007311 ORTHO05D009011 2.7e-50 202.2 148 64.9
Eucgr.E01832 Eucalyptus grandis HOM05D007311 ORTHO05D009011 4.7e-50 201.4 149 65.1
FvH4_5g24490 Fragaria vesca HOM05D007311 ORTHO05D009011 6.1e-50 201.1 172 58.1
PSO210G1792 Papaver somniferum HOM05D007311 ORTHO05D009011 6.1e-50 201.1 145 64.1
Migut.E01383 Erythranthe guttata HOM05D007311 ORTHO05D009011 1.0e-49 200.3 148 62.8
Cc01_g03300 Coffea canephora HOM05D007311 ORTHO05D009011 1.8e-49 199.5 148 65.5
PSO238G0022 Papaver somniferum HOM05D007311 ORTHO05D009011 4.0e-49 198.4 145 63.4
Potri.003G106700 Populus trichocarpa HOM05D007311 ORTHO05D009011 5.2e-49 198.0 149 65.1
Oeu031947.3 Olea europaea HOM05D007311 ORTHO05D009011 6.8e-49 197.6 168 59.5
Hund06317 Selenicereus undatus HOM05D007311 ORTHO05D009011 8.8e-49 197.2 148 64.2
TAR629G0827 Trochodendron aralioides HOM05D007311 ORTHO05D009011 1.2e-48 196.8 148 64.2
Thecc.03G322100 Theobroma cacao HOM05D007311 ORTHO05D009011 2.0e-48 196.1 154 63.0
ECA233G4235 Erigeron canadensis HOM05D007311 ORTHO05D009011 2.6e-48 195.7 151 62.3
HanXRQChr07g0198461 Helianthus annuus HOM05D007311 ORTHO05D009011 3.4e-48 195.3 149 61.1
Nitab4.5_0000623g0080 Nicotiana tabacum HOM05D007311 ORTHO05D009011 4.4e-48 194.9 146 61.6
Haze_08033 Corylus avellana HOM05D007311 ORTHO05D009011 5.7e-48 194.5 212 49.5
CANSAT35G1819 Cannabis sativa HOM05D000351 ORTHO05D000250 2.8e-47 192.2 153 60.1
HPP92_005283 Vanilla planifolia HOM05D007311 ORTHO05D009011 4.8e-47 191.4 144 60.4
Sabra03G0073500 Salix brachista HOM05D007311 ORTHO05D009011 1.4e-46 189.9 149 61.7
Nitab4.5_0007008g0080 Nicotiana tabacum HOM05D007311 ORTHO05D009011 1.8e-46 189.5 146 59.6
vmacro22112 Vaccinium macrocarpon HOM05D007311 ORTHO05D009011 1.8e-46 189.5 171 59.1
CDE11G0786 Ceratophyllum demersum HOM05D007311 ORTHO05D009011 2.4e-46 189.1 148 58.1
Gorai.004G176300 Gossypium raimondii HOM05D007311 ORTHO05D009011 2.4e-46 189.1 186 52.7
SGA_v2.0_scaffold144G35891 Striga asiatica HOM05D007311 ORTHO05D009011 2.4e-46 189.1 165 58.8
unitig_899.g14733 Utricularia gibba HOM05D007311 ORTHO05D009011 5.4e-46 188.0 149 62.4
Solyc08g075070.3 Solanum lycopersicum HOM05D007311 ORTHO05D009011 1.2e-45 186.8 146 61.0
Sc18g0005580 Simmondsia chinensis HOM05D007311 ORTHO05D009011 2.7e-45 185.7 132 64.4
CAN.G22.34 Capsicum annuum HOM05D007311 ORTHO05D009011 4.5e-45 184.9 146 59.6
Cpa.g.sc542.2 Carica papaya HOM05D007311 ORTHO05D009011 2.9e-44 182.2 124 69.4
Zm00001eb284430 Zea mays HOM05D007311 ORTHO05D009011 2.9e-44 182.2 145 56.6
AUR62010310 Chenopodium quinoa HOM05D007311 ORTHO05D009011 2.8e-42 175.6 120 68.3
MBI03_g29283_MAGBIO Magnolia biondii HOM05D006174 ORTHO05D007987 4.7e-42 174.9 131 61.1
ATR0796G066 Amborella trichopoda HOM05D007311 ORTHO05D009011 6.1e-42 174.5 143 56.6
QL12p002612 Quercus lobata HOM05D007311 ORTHO05D009011 1.5e-40 169.9 146 56.2
PGSC0003DMG400020814 Solanum tuberosum HOM05D007311 ORTHO05D009011 2.8e-39 165.6 174 49.4
CSS0046759 Camellia sinensis var. sinensis HOM05D007311 ORTHO05D009011 2.7e-37 159.1 111 69.4
Os05g0241400 Oryza sativa ssp. japonica HOM05D007311 ORTHO05D009011 1.0e-36 157.1 119 58.8
Dinv37446 Davidia involucrata HOM05D007311 ORTHO05D009011 1.5e-32 143.3 104 64.4
Ah.01g011070 Amaranthus hybridus HOM05D007311 ORTHO05D009011 4.9e-31 138.3 104 63.5
AagrBONN_evm.TU.Sc2ySwM_228.4293 Anthoceros agrestis HOM05D007311 ORTHO05D009011 8.6e-28 127.5 145 39.3
TWI60G1527 Tripterygium wilfordii HOM05D007311 ORTHO05D009011 1.1e-27 127.1 148 46.6
BcaC02g07636 Brassica carinata HOM05D007311 ORTHO05D009011 9.5e-27 124.0 103 70.9
SEGI_31752 Sequoiadendron giganteum HOM05D007311 ORTHO05D009011 1.8e-25 119.8 101 52.5
Sopen08g023700 Solanum pennellii HOM05D007311 ORTHO05D009011 4.0e-25 118.6 92 58.7
Eucgr.E01790 Eucalyptus grandis HOM05D007311 ORTHO05D009011 8.3e-23 110.9 82 61.0
SMO139G0010 Selaginella moellendorffii HOM05D007311 ORTHO05D009011 5.2e-17 91.7 151 33.1
Eucgr.E01869 Eucalyptus grandis HOM05D007311 ORTHO05D009011 8.9e-17 90.9 66 66.7
Rhsim07G0141400 Rhododendron simsii HOM05D000351 ORTHO05D000250 9.9e-16 87.4 123 45.5
SalBow1G6002 Salvia bowleyana HOM05D007311 ORTHO05D009011 2.2e-15 86.3 66 62.1
Mapoly0040s0015 Marchantia polymorpha HOM05D007311 ORTHO05D009011 2.9e-15 85.9 146 32.9
SalBow8G5581 Salvia bowleyana HOM05D007311 ORTHO05D009011 3.7e-15 85.5 67 59.7
Zm00001eb347540 Zea mays HOM05D007311 ORTHO05D009011 2.3e-12 76.3 66 50.0
Medtr5g045430 Medicago truncatula HOM05D007311 ORTHO05D009011 3.0e-12 75.9 66 59.1
FAN13G1634 Fragaria x ananassa HOM05D007311 ORTHO05D009011 5.1e-12 75.1 45 71.1
Ciclev10003443m.g Citrus clementina HOM05D007311 ORTHO05D009011 1.5e-11 73.6 77 42.9
Ca_12103_v3 Cicer arietinum L. HOM05D007311 ORTHO05D009011 2.8e-10 69.3 38 78.9
Medtr2g084355 Medicago truncatula HOM05D003237 ORTHO05D003631 4.9e-07 58.5 44 70.5


User provided reference genes

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