Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp7g17850 Schrenkiella parvula HOM05D006475 ORTHO05D007969 6.9e-89 331.3 259 100.0
Thhalv10026017m.g Eutrema salsugineum HOM05D006475 ORTHO05D007969 2.1e-66 256.5 260 85.4
BcaC09g51436 Brassica carinata HOM05D006475 ORTHO05D007969 1.2e-64 250.8 252 86.1
BolC1t01287H Brassica oleracea HOM05D006475 ORTHO05D007969 1.2e-64 250.8 252 86.1
A01p11110 Brassica napus HOM05D006475 ORTHO05D007969 2.0e-64 250.0 252 86.1
BraA01t01057Z Brassica rapa HOM05D006475 ORTHO05D007969 2.0e-64 250.0 252 86.1
Carub.0007s2200 Capsella rubella HOM05D006475 ORTHO05D007969 1.2e-61 240.7 260 83.5
AL7G34940 Arabidopsis lyrata HOM05D006475 ORTHO05D007969 1.6e-61 240.4 242 86.4
CARHR226020 Cardamine hirsuta HOM05D006475 ORTHO05D007969 2.3e-60 236.5 240 85.8
Aa31LG6G1840 Aethionema arabicum HOM05D006475 ORTHO05D007969 1.5e-51 207.2 278 75.2
BcaNung04008 Brassica carinata HOM05D006475 ORTHO05D007969 4.1e-49 199.1 208 90.4
AT4G19150 Arabidopsis thaliana HOM05D006475 ORTHO05D007969 5.0e-47 192.2 244 82.0
C01p13140 Brassica napus HOM05D006475 ORTHO05D007969 5.5e-38 162.2 179 91.6
THA.LOC104812889 Tarenaya hassleriana HOM05D006475 ORTHO05D007969 2.1e-37 160.2 239 72.0
Actinidia14740 Actinidia chinensis HOM05D006475 ORTHO05D007969 5.2e-28 129.0 245 64.1
CiPaw.12G072000 Carya illinoinensis HOM05D006475 ORTHO05D007969 1.2e-27 127.9 254 65.7
Thecc.01G139200 Theobroma cacao HOM05D006475 ORTHO05D007969 1.2e-27 127.9 240 65.0
Manes.17G003100 Manihot esculenta HOM05D006475 ORTHO05D007969 2.6e-27 126.7 250 63.6
Nn3g19252 Nelumbo nucifera HOM05D006475 ORTHO05D007969 3.4e-27 126.3 237 65.8
PGR031G1524 Punica granatum HOM05D006475 ORTHO05D007969 5.7e-27 125.6 241 63.5
Cfa012603 Carpinus fangiana HOM05D006475 ORTHO05D007969 9.7e-27 124.8 241 65.1
Ah.12g056010 Amaranthus hybridus HOM05D006475 ORTHO05D007969 1.7e-26 124.0 243 64.6
Actinidia18163 Actinidia chinensis HOM05D006475 ORTHO05D007969 2.8e-26 123.2 243 63.0
Prupe.5G019900 Prunus persica HOM05D006475 ORTHO05D007969 2.8e-26 123.2 239 64.0
RcHm_v2.0_Chr7g0213461 Rosa chinensis HOM05D006475 ORTHO05D007969 3.7e-26 122.9 247 63.2
Lj8A334T74 Lonicera japonica HOM05D006475 ORTHO05D007969 4.1e-25 119.4 244 63.5
SGA_v2.0_scaffold144G35881 Striga asiatica HOM05D006475 ORTHO05D007969 4.1e-25 119.4 74 78.4
AUR62007413 Chenopodium quinoa HOM05D006475 ORTHO05D007969 9.1e-25 118.2 239 61.9
Potri.001G130500 Populus trichocarpa HOM05D006475 ORTHO05D007969 9.1e-25 118.2 241 61.8
EL10Ac5g11923 Beta vulgaris HOM05D006475 ORTHO05D007969 2.0e-24 117.1 74 77.0
arahy.Tifrunner.gnm1.ann1.0NMX6V Arachis hypogaea HOM05D006475 ORTHO05D007969 2.7e-24 116.7 263 58.9
arahy.Tifrunner.gnm1.ann1.CC5QNU Arachis hypogaea HOM05D006475 ORTHO05D007969 2.7e-24 116.7 263 58.9
TWI23G0232 Tripterygium wilfordii HOM05D006475 ORTHO05D007969 3.5e-24 116.3 240 63.3
Cc08_g05010 Coffea canephora HOM05D006475 ORTHO05D007969 4.5e-24 115.9 242 50.4
unitig_0.g2207 Utricularia gibba HOM05D006475 ORTHO05D007969 4.5e-24 115.9 85 71.8
Lsat_1_v5_gn_6_15221 Lactuca sativa HOM05D006475 ORTHO05D007969 5.9e-24 115.5 238 63.9
AUR62027319 Chenopodium quinoa HOM05D006475 ORTHO05D007969 1.0e-23 114.8 242 62.0
PSO717G0136 Papaver somniferum HOM05D006475 ORTHO05D007969 1.0e-23 114.8 67 82.1
PSO675G8107 Papaver somniferum HOM05D006475 ORTHO05D007969 1.3e-23 114.4 75 77.3
Rhsim07G0139200 Rhododendron simsii HOM05D006475 ORTHO05D007969 1.3e-23 114.4 244 61.5
SalBow8G0939 Salvia bowleyana HOM05D006475 ORTHO05D007969 1.3e-23 114.4 241 62.7
Cpa.g.sc137.18 Carica papaya HOM05D006475 ORTHO05D007969 1.7e-23 114.0 241 61.8
Sopen08g001530 Solanum pennellii HOM05D006475 ORTHO05D007969 1.7e-23 114.0 240 61.7
DCAR_028235 Daucus carota HOM05D006475 ORTHO05D007969 2.2e-23 113.6 243 60.5
MSTRG.1769 Avicennia marina HOM05D006475 ORTHO05D007969 2.9e-23 113.2 238 64.3
HanXRQChr08g0226771 Helianthus annuus HOM05D006475 ORTHO05D007969 2.9e-23 113.2 76 71.1
Nitab4.5_0006541g0010 Nicotiana tabacum HOM05D006475 ORTHO05D007969 3.8e-23 112.8 244 62.3
FAN18G1960 Fragaria x ananassa HOM05D006475 ORTHO05D007969 5.0e-23 112.5 243 63.0
Potri.003G103400 Populus trichocarpa HOM05D006475 ORTHO05D007969 5.0e-23 112.5 252 60.3
PGSC0003DMG400018460 Solanum tuberosum HOM05D006475 ORTHO05D007969 5.0e-23 112.5 244 61.5
GSVIVG01022797001 Vitis vinifera HOM05D006475 ORTHO05D007969 5.0e-23 112.5 69 78.3
FAN08G1612 Fragaria x ananassa HOM05D006475 ORTHO05D007969 8.5e-23 111.7 231 64.1
Glyma.01G149900 Glycine max HOM05D006475 ORTHO05D007969 8.5e-23 111.7 241 62.7
FAN13G3229 Fragaria x ananassa HOM05D006475 ORTHO05D007969 1.1e-22 111.3 237 63.3
Peaxi162Scf00045g00636 Petunia axillaris HOM05D006475 ORTHO05D007969 1.9e-22 110.5 241 63.1
Solyc08g005520.3 Solanum lycopersicum HOM05D006475 ORTHO05D007969 1.9e-22 110.5 240 61.7
FvH4_5g24000 Fragaria vesca HOM05D006475 ORTHO05D007969 2.5e-22 110.2 243 62.6
Duzib187G1769 Durio zibethinus HOM05D006475 ORTHO05D007969 3.2e-22 109.8 239 60.7
Haze_08058 Corylus avellana HOM05D006475 ORTHO05D007969 4.2e-22 109.4 253 61.3
Migut.E01351 Erythranthe guttata HOM05D006475 ORTHO05D007969 4.2e-22 109.4 71 76.1
Nitab4.5_0001175g0100 Nicotiana tabacum HOM05D006475 ORTHO05D007969 4.2e-22 109.4 244 62.3
Sabra03G0070600 Salix brachista HOM05D006475 ORTHO05D007969 4.2e-22 109.4 251 60.2
Aqoxy7G00886 Aquilegia oxysepala HOM05D006475 ORTHO05D007969 5.5e-22 109.0 74 74.3
CSS0010448 Camellia sinensis var. sinensis HOM05D006475 ORTHO05D007969 5.5e-22 109.0 236 63.6
Phvul.002G128300 Phaseolus vulgaris HOM05D006475 ORTHO05D007969 2.1e-21 107.1 251 61.8
VMungo1215G2540 Vigna mungo HOM05D006475 ORTHO05D007969 2.1e-21 107.1 237 62.4
Haze_08048 Corylus avellana HOM05D006475 ORTHO05D007969 2.7e-21 106.7 261 59.4
Hund11101 Selenicereus undatus HOM05D006475 ORTHO05D007969 3.6e-21 106.3 251 59.0
Eucgr.D02591 Eucalyptus grandis HOM05D006475 ORTHO05D007969 4.7e-21 105.9 241 61.8
Gohir.D03G018700 Gossypium hirsutum HOM05D006475 ORTHO05D007969 4.7e-21 105.9 69 73.9
Gorai.012G037900 Gossypium raimondii HOM05D006475 ORTHO05D007969 4.7e-21 105.9 240 61.7
arahy.Tifrunner.gnm1.ann1.Y3VSY6 Arachis hypogaea HOM05D006475 ORTHO05D007969 8.0e-21 105.1 187 52.4
Os10g0580700 Oryza sativa ssp. japonica HOM05D006475 ORTHO05D007969 8.0e-21 105.1 68 73.5
Gohir.A05G381700 Gossypium hirsutum HOM05D006475 ORTHO05D007969 1.0e-20 104.8 240 61.2
TPR.G17268 Trifolium pratense HOM05D006475 ORTHO05D007969 1.0e-20 104.8 78 70.5
CANSAT21G0913 Cannabis sativa HOM05D006475 ORTHO05D007969 1.4e-20 104.4 207 65.7
CAN.G320.16 Capsicum annuum HOM05D006475 ORTHO05D007969 1.4e-20 104.4 241 61.4
arahy.Tifrunner.gnm1.ann1.SLXS5Y Arachis hypogaea HOM05D006475 ORTHO05D007969 1.8e-20 104.0 184 71.7
Hma1.2p1_0544F.1_g175570 Hydrangea macrophylla HOM05D006475 ORTHO05D007969 1.8e-20 104.0 242 62.4
C03p81780 Brassica napus HOM05D006475 ORTHO05D007969 2.3e-20 103.6 73 75.3
FAN04G1597 Fragaria x ananassa HOM05D006475 ORTHO05D007969 3.0e-20 103.2 244 61.1
Gohir.D04G033600 Gossypium hirsutum HOM05D006475 ORTHO05D007969 5.2e-20 102.4 240 60.8
Zm00001eb025510 Zea mays HOM05D006475 ORTHO05D007969 5.2e-20 102.4 233 62.2
arahy.Tifrunner.gnm1.ann1.17PB5S Arachis hypogaea HOM05D006475 ORTHO05D007969 1.2e-19 101.3 204 64.7
Lalb_Chr05g0215421 Lupinus albus HOM05D006475 ORTHO05D007969 1.2e-19 101.3 265 56.2
BolC3t20450H Brassica oleracea HOM05D006475 ORTHO05D007969 2.0e-19 100.5 73 74.0
Ciclev10005760m.g Citrus clementina HOM05D006475 ORTHO05D007969 2.6e-19 100.1 235 61.3
AagrBONN_evm.TU.Sc2ySwM_228.4166 Anthoceros agrestis HOM05D006475 ORTHO05D007969 3.4e-19 99.8 74 63.5
Ca_25099_v3 Cicer arietinum L. HOM05D006475 ORTHO05D007969 4.4e-19 99.4 255 60.4
Glyma.09G214000 Glycine max HOM05D006475 ORTHO05D007969 3.7e-18 96.3 237 59.9
Dinv28010 Davidia involucrata HOM05D006475 ORTHO05D007969 6.3e-18 95.5 59 76.3
CDE11G0189 Ceratophyllum demersum HOM05D006475 ORTHO05D007969 2.4e-17 93.6 251 58.6
ECA233G2922 Erigeron canadensis HOM05D006475 ORTHO05D007969 7.0e-17 92.0 248 46.8
Medtr5g026800 Medicago truncatula HOM05D006475 ORTHO05D007969 7.0e-17 92.0 273 55.7
Psat2g142320 Pisum sativum HOM05D006475 ORTHO05D007969 9.1e-17 91.7 70 70.0
Mapoly0051s0035 Marchantia polymorpha HOM05D006475 ORTHO05D007969 3.5e-16 89.7 68 63.2
SEGI_07236 Sequoiadendron giganteum HOM05D006475 ORTHO05D007969 3.5e-16 89.7 77 59.7
HPP92_021118 Vanilla planifolia HOM05D006475 ORTHO05D007969 3.5e-16 89.7 236 58.5
vmacro17427 Vaccinium macrocarpon HOM05D006475 ORTHO05D007969 6.6e-15 85.5 298 52.3
Lj2g0004034 Lotus japonicus HOM05D006475 ORTHO05D007969 2.8e-13 80.1 61 72.1
ClCG10G015530 Citrullus lanatus HOM05D000058 ORTHO05D000077 2.6e-11 73.6 51 66.7
Sed0010053 Sechium edule HOM05D006475 ORTHO05D007969 3.7e-10 69.7 57 61.4
Pp3c7_14210 Physcomitrium patens HOM05D006475 ORTHO05D007969 8.3e-10 68.6 51 54.9
arahy.Tifrunner.gnm1.ann1.X7UPX8 Arachis hypogaea HOM05D006475 ORTHO05D007969 1.1e-09 68.2 229 54.6
CBR_g41202 Chara braunii HOM05D006475 ORTHO05D007969 9.2e-09 65.1 45 64.4
QL08p050707 Quercus lobata HOM05D006475 ORTHO05D007969 9.2e-09 65.1 207 61.8
arahy.Tifrunner.gnm1.ann1.79230D Arachis hypogaea HOM05D006475 ORTHO05D007969 4.5e-08 62.8 199 39.7
FAN18G4370 Fragaria x ananassa HOM05D006475 ORTHO05D007969 1.0e-07 61.6 198 62.6
CsaV3_3G040920 Cucumis sativus L. HOM05D006475 ORTHO05D007969 1.7e-07 60.8 262 51.9
Oeu042209.2 Olea europaea HOM05D006475 ORTHO05D007969 1.7e-07 60.8 35 82.9
Nitab4.5_0000532g0060 Nicotiana tabacum HOM05D006475 ORTHO05D007969 2.3e-07 60.5 34 76.5
Nitab4.5_0001175g0110 Nicotiana tabacum HOM05D006475 ORTHO05D007969 3.9e-07 59.7 34 76.5
TAR375G0514 Trochodendron aralioides HOM05D006475 ORTHO05D007969 3.9e-07 59.7 202 60.9


User provided reference genes

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