Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp7g17510 Schrenkiella parvula HOM05D005007 ORTHO05D006053 1.1e-44 183.0 91 100.0
BcaB04g18501 Brassica carinata HOM05D005007 ORTHO05D006053 6.2e-37 157.1 91 85.7
CARHR225660 Cardamine hirsuta HOM05D005007 ORTHO05D006053 9.9e-35 149.8 89 84.3
Carub.0007s2243 Capsella rubella HOM05D005007 ORTHO05D006053 6.4e-34 147.1 90 81.1
Thhalv10027446m.g Eutrema salsugineum HOM05D005007 ORTHO05D006053 7.1e-33 143.7 90 78.9
C03p81500 Brassica napus HOM05D005007 ORTHO05D006053 1.1e-28 129.8 79 82.3
BolC3t20421H Brassica oleracea HOM05D005007 ORTHO05D006053 1.1e-28 129.8 79 82.3
BraA08t33391Z Brassica rapa HOM05D005007 ORTHO05D006053 1.1e-28 129.8 79 82.3
Gohir.D05G156101 Gossypium hirsutum HOM05D005007 ORTHO05D006053 2.1e-16 89.0 74 58.1
Potri.004G061100 Populus trichocarpa HOM05D005007 ORTHO05D006053 3.6e-16 88.2 87 51.7
Duzib192G0425 Durio zibethinus HOM05D005007 ORTHO05D006053 1.0e-15 86.7 92 50.0
Sabra04G0040400 Salix brachista HOM05D005007 ORTHO05D006053 1.8e-15 85.9 82 53.7
Thecc.06G165800 Theobroma cacao HOM05D005007 ORTHO05D006053 2.3e-15 85.5 83 49.4
Gohir.A06G133600 Gossypium hirsutum HOM05D005007 ORTHO05D006053 6.7e-15 84.0 80 50.0
Duzib235G0435 Durio zibethinus HOM05D005007 ORTHO05D006053 1.1e-14 83.2 88 48.9
Duzib160G0236 Durio zibethinus HOM05D005007 ORTHO05D006053 1.5e-14 82.8 80 50.0
Gohir.D06G138700 Gossypium hirsutum HOM05D005007 ORTHO05D006053 1.5e-14 82.8 80 50.0
Gorai.010G161300 Gossypium raimondii HOM05D005007 ORTHO05D006053 1.9e-14 82.4 80 50.0
Glyma.05G160900 Glycine max HOM05D005007 ORTHO05D006053 2.5e-14 82.0 78 50.0
COL.COLO4_31238 Corchorus olitorius HOM05D005007 ORTHO05D006053 7.4e-14 80.5 88 45.5
Actinidia39520 Actinidia chinensis HOM05D005007 ORTHO05D006053 9.7e-14 80.1 81 51.9
arahy.Tifrunner.gnm1.ann1.VZS9XU Arachis hypogaea HOM05D005007 ORTHO05D006053 9.7e-14 80.1 82 47.6
arahy.Tifrunner.gnm1.ann1.HJBU6U Arachis hypogaea HOM05D005007 ORTHO05D006053 1.3e-13 79.7 82 47.6
Gohir.A05G153450 Gossypium hirsutum HOM05D005007 ORTHO05D006053 1.3e-13 79.7 77 48.1
MD10G1275600 Malus domestica HOM05D005007 ORTHO05D006053 1.3e-13 79.7 75 49.3
Prupe.4G066600 Prunus persica HOM05D005007 ORTHO05D006053 1.7e-13 79.3 78 47.4
Dinv32340 Davidia involucrata HOM05D005007 ORTHO05D006053 2.8e-13 78.6 86 46.5
MD00G1009400 Malus domestica HOM05D005007 ORTHO05D006053 2.8e-13 78.6 90 46.7
MD05G1295500 Malus domestica HOM05D005007 ORTHO05D006053 2.8e-13 78.6 90 46.7
CSS0026874 Camellia sinensis var. sinensis HOM05D005007 ORTHO05D006053 1.8e-12 75.9 77 54.5
Cpa.g.sc7.108 Carica papaya HOM05D005007 ORTHO05D006053 1.8e-12 75.9 94 42.6
Hma1.2p1_0934F.1_g238510 Hydrangea macrophylla HOM05D005007 ORTHO05D006053 1.8e-12 75.9 83 48.2
Sed0011988 Sechium edule HOM05D005007 ORTHO05D006053 2.4e-12 75.5 73 47.9
Dinv12754 Davidia involucrata HOM05D005007 ORTHO05D006053 3.1e-12 75.1 86 46.5
PGR042G3787 Punica granatum HOM05D005007 ORTHO05D006053 3.1e-12 75.1 66 53.0
Sabra11G0055100 Salix brachista HOM05D005007 ORTHO05D006053 4.1e-12 74.7 87 44.8
Manes.16G043000 Manihot esculenta HOM05D005007 ORTHO05D006053 5.3e-12 74.3 81 49.4
Sed0017213 Sechium edule HOM05D005007 ORTHO05D006053 5.3e-12 74.3 87 40.2
CDE10G0299 Ceratophyllum demersum HOM05D005007 ORTHO05D006053 6.9e-12 73.9 82 46.3
Lsat_1_v5_gn_7_25701 Lactuca sativa HOM05D005007 ORTHO05D006053 6.9e-12 73.9 88 48.9
Atru.chr10.1572 Acer truncatum HOM05D005007 ORTHO05D006053 1.2e-11 73.2 61 50.8
Lalb_Chr13g0295281 Lupinus albus HOM05D005007 ORTHO05D006053 1.2e-11 73.2 85 45.9
Glyma.08G118300 Glycine max HOM05D005007 ORTHO05D006053 1.5e-11 72.8 66 50.0
Manes.17G059100 Manihot esculenta HOM05D005007 ORTHO05D006053 1.5e-11 72.8 75 52.0
Potri.011G070400 Populus trichocarpa HOM05D005007 ORTHO05D006053 1.5e-11 72.8 80 47.5
QL05p049974 Quercus lobata HOM05D005007 ORTHO05D006053 2.0e-11 72.4 86 44.2
Lalb_Chr03g0031211 Lupinus albus HOM05D005007 ORTHO05D006053 2.6e-11 72.0 99 42.4
Oeu039881.1 Olea europaea HOM05D005007 ORTHO05D006053 2.6e-11 72.0 68 48.5
Phvul.002G241000 Phaseolus vulgaris HOM05D005007 ORTHO05D006053 2.6e-11 72.0 67 50.7
Medtr8g087320 Medicago truncatula HOM05D005007 ORTHO05D006053 3.4e-11 71.6 77 46.8
Sabra11G0058300 Salix brachista HOM05D005007 ORTHO05D006053 3.4e-11 71.6 73 45.2
Ca_17898_v3 Cicer arietinum L. HOM05D005007 ORTHO05D006053 4.5e-11 71.2 74 44.6
Haze_05357 Corylus avellana HOM05D005007 ORTHO05D006053 4.5e-11 71.2 87 42.5
MBI06_g18688_MAGBIO Magnolia biondii HOM05D005007 ORTHO05D006053 4.5e-11 71.2 74 47.3
Thecc.07G118400 Theobroma cacao HOM05D005007 ORTHO05D006053 4.5e-11 71.2 92 43.5
SalBow7G2341 Salvia bowleyana HOM05D005007 ORTHO05D006053 5.9e-11 70.9 71 50.7
GSVIVG01021255001 Vitis vinifera HOM05D005007 ORTHO05D006053 5.9e-11 70.9 67 49.3
ECA236G3784 Erigeron canadensis HOM05D005007 ORTHO05D006053 7.7e-11 70.5 87 44.8
Glyma.06G227850 Glycine max HOM05D005007 ORTHO05D006053 1.3e-10 69.7 89 42.7
Glyma.06G227900 Glycine max HOM05D005007 ORTHO05D006053 1.3e-10 69.7 89 42.7
HanXRQChr02g0038411 Helianthus annuus HOM05D005007 ORTHO05D006053 1.3e-10 69.7 87 46.0
CANSAT35G0905 Cannabis sativa HOM05D005007 ORTHO05D006053 1.7e-10 69.3 70 51.4
Migut.H01413 Erythranthe guttata HOM05D005007 ORTHO05D006053 1.7e-10 69.3 61 55.7
SalBow8G4395 Salvia bowleyana HOM05D005007 ORTHO05D006053 1.7e-10 69.3 71 47.9
AUR62039477 Chenopodium quinoa HOM05D005007 ORTHO05D006053 2.2e-10 68.9 76 46.1
Cc02_g15570 Coffea canephora HOM05D005007 ORTHO05D006053 2.2e-10 68.9 78 46.2
MELO3C007199.2 Cucumis melo HOM05D005007 ORTHO05D006053 2.2e-10 68.9 76 43.4
CsaV3_6G051040 Cucumis sativus L. HOM05D005007 ORTHO05D006053 2.2e-10 68.9 76 43.4
DCAR_007938 Daucus carota HOM05D005007 ORTHO05D006053 2.2e-10 68.9 77 41.6
Oeu060171.1 Olea europaea HOM05D005007 ORTHO05D006053 2.2e-10 68.9 87 44.8
TPR.G6805 Trifolium pratense HOM05D000213 ORTHO05D000426 2.2e-10 68.9 69 47.8
Actinidia35601 Actinidia chinensis HOM05D005007 ORTHO05D006053 2.9e-10 68.6 92 46.7
CiPaw.09G137100 Carya illinoinensis HOM05D005007 ORTHO05D006053 2.9e-10 68.6 88 43.2
Ciclev10017907m.g Citrus clementina HOM05D005007 ORTHO05D006053 2.9e-10 68.6 82 43.9
DCAR_003989 Daucus carota HOM05D005007 ORTHO05D006053 2.9e-10 68.6 79 40.5
TWI09G0208 Tripterygium wilfordii HOM05D005007 ORTHO05D006053 2.9e-10 68.6 81 40.7
COL.COLO4_17528 Corchorus olitorius HOM05D005007 ORTHO05D006053 3.8e-10 68.2 96 43.8
Migut.H01416 Erythranthe guttata HOM05D005007 ORTHO05D006053 3.8e-10 68.2 61 55.7
Gorai.009G160600 Gossypium raimondii HOM05D005007 ORTHO05D006053 3.8e-10 68.2 58 46.6
Manes.15G095801 Manihot esculenta HOM05D005007 ORTHO05D006053 3.8e-10 68.2 85 43.5
Peaxi162Scf00202g00119 Petunia axillaris HOM05D005007 ORTHO05D006053 3.8e-10 68.2 78 50.0
FAN21G0366 Fragaria x ananassa HOM05D005007 ORTHO05D006053 5.0e-10 67.8 77 45.5
Lalb_Chr01g0006861 Lupinus albus HOM05D005007 ORTHO05D006053 5.0e-10 67.8 99 40.4
RcHm_v2.0_Chr5g0011631 Rosa chinensis HOM05D005007 ORTHO05D006053 5.0e-10 67.8 62 50.0
ClCG01G023890 Citrullus lanatus HOM05D005007 ORTHO05D006053 6.5e-10 67.4 83 36.1
Solyc02g072170.3 Solanum lycopersicum HOM05D005007 ORTHO05D006053 6.5e-10 67.4 79 45.6
Sopen02g021150 Solanum pennellii HOM05D005007 ORTHO05D006053 6.5e-10 67.4 79 45.6
Cpa.g.sc77.26 Carica papaya HOM05D005007 ORTHO05D006053 8.5e-10 67.0 96 42.7
FvH4_3g07320 Fragaria vesca HOM05D005007 ORTHO05D006053 8.5e-10 67.0 77 45.5
FAN11G0120 Fragaria x ananassa HOM05D005007 ORTHO05D006053 8.5e-10 67.0 77 45.5
Ah.14g087010 Amaranthus hybridus HOM05D005007 ORTHO05D006053 1.1e-09 66.6 81 45.7
arahy.Tifrunner.gnm1.ann1.G1B0F8 Arachis hypogaea HOM05D005007 ORTHO05D006053 1.1e-09 66.6 69 49.3
CSS0021075 Camellia sinensis var. sinensis HOM05D005007 ORTHO05D006053 1.1e-09 66.6 87 48.3
FAN25G2704 Fragaria x ananassa HOM05D005007 ORTHO05D006053 1.1e-09 66.6 83 43.4
PGSC0003DMG400028468 Solanum tuberosum HOM05D005007 ORTHO05D006053 1.1e-09 66.6 79 43.0
Actinidia35210 Actinidia chinensis HOM05D005007 ORTHO05D006053 1.4e-09 66.2 74 44.6
MSTRG.7429 Avicennia marina HOM05D005007 ORTHO05D006053 1.9e-09 65.9 83 45.8
Psat7g068680 Pisum sativum HOM05D005007 ORTHO05D006053 1.9e-09 65.9 69 44.9
Nitab4.5_0000437g0140 Nicotiana tabacum HOM05D005007 ORTHO05D006053 2.5e-09 65.5 64 53.1
Ciclev10022947m.g Citrus clementina HOM05D005007 ORTHO05D006053 7.2e-09 63.9 77 40.3
FAN16G2723 Fragaria x ananassa HOM05D005007 ORTHO05D006053 9.4e-09 63.5 77 44.2
vmacro11948 Vaccinium macrocarpon HOM05D005007 ORTHO05D006053 9.4e-09 63.5 78 47.4
HPP92_008753 Vanilla planifolia HOM05D005007 ORTHO05D006053 9.4e-09 63.5 67 44.8
Nitab4.5_0007471g0020 Nicotiana tabacum HOM05D005007 ORTHO05D006053 1.2e-08 63.2 64 51.6
CiPaw.12G113100 Carya illinoinensis HOM05D005007 ORTHO05D006053 1.6e-08 62.8 78 41.0
Haze_09314 Corylus avellana HOM05D005007 ORTHO05D006053 2.1e-08 62.4 74 40.5
Nn3g21105 Nelumbo nucifera HOM05D005007 ORTHO05D006053 2.1e-08 62.4 80 42.5
Rhsim06G0209000 Rhododendron simsii HOM05D005007 ORTHO05D006053 2.1e-08 62.4 79 46.8
Phvul.011G165600 Phaseolus vulgaris HOM05D005007 ORTHO05D006053 2.7e-08 62.0 89 38.2
VMungo1127G1862 Vigna mungo HOM05D005007 ORTHO05D006053 3.6e-08 61.6 82 43.9
Glyma.12G156400 Glycine max HOM05D005007 ORTHO05D006053 4.7e-08 61.2 89 38.2
Potri.001G393001 Populus trichocarpa HOM05D005007 ORTHO05D006053 4.7e-08 61.2 92 42.4
Rhsim02G0146700 Rhododendron simsii HOM05D005007 ORTHO05D006053 6.1e-08 60.8 81 48.1
Gohir.D01G042700 Gossypium hirsutum HOM05D005007 ORTHO05D006053 7.9e-08 60.5 66 48.5
Gorai.002G053600 Gossypium raimondii HOM05D005007 ORTHO05D006053 7.9e-08 60.5 66 48.5
QL08p025919 Quercus lobata HOM05D005007 ORTHO05D006053 7.9e-08 60.5 88 37.5
RcHm_v2.0_Chr5g0030711 Rosa chinensis HOM05D005007 ORTHO05D006053 1.4e-07 59.7 61 49.2
Aqoxy4G00249 Aquilegia oxysepala HOM05D005007 ORTHO05D006053 1.8e-07 59.3 78 43.6
DCAR_005144 Daucus carota HOM05D005007 ORTHO05D006053 2.3e-07 58.9 83 38.6
Prupe.4G161500 Prunus persica HOM05D005007 ORTHO05D006053 2.3e-07 58.9 64 48.4
CiPaw.11G159400 Carya illinoinensis HOM05D005007 ORTHO05D006053 3.0e-07 58.5 82 36.6
ClCG07G010220 Citrullus lanatus HOM05D005007 ORTHO05D006053 3.9e-07 58.2 67 41.8
Actinidia18804 Actinidia chinensis HOM05D005007 ORTHO05D006053 5.1e-07 57.8 71 39.4
Lsat_1_v5_gn_5_126541 Lactuca sativa HOM05D005007 ORTHO05D006053 5.1e-07 57.8 83 38.6
MD11G1264800 Malus domestica HOM05D005007 ORTHO05D006053 5.1e-07 57.8 66 48.5
TWI39G0558 Tripterygium wilfordii HOM05D005007 ORTHO05D006053 5.1e-07 57.8 74 43.2
unitig_0.g744 Utricularia gibba HOM05D005007 ORTHO05D006053 5.1e-07 57.8 59 54.2
EL10Ac4g08365 Beta vulgaris HOM05D005007 ORTHO05D006053 6.7e-07 57.4 47 53.2
Gohir.A01G053200 Gossypium hirsutum HOM05D005007 ORTHO05D006053 6.7e-07 57.4 66 47.0
Sabra16G0257800 Salix brachista HOM05D005007 ORTHO05D006053 6.7e-07 57.4 76 40.8
Peaxi162Scf00111g01466 Petunia axillaris HOM05D005007 ORTHO05D006053 1.5e-06 56.2 67 47.8
Ah.09g233580 Amaranthus hybridus HOM05D005007 ORTHO05D006053 3.3e-06 55.1 60 45.0
Atru.chr2.2102 Acer truncatum HOM05D005007 ORTHO05D006053 5.7e-06 54.3 61 41.0
CsaV3_4G008110 Cucumis sativus L. HOM05D005007 ORTHO05D006053 5.7e-06 54.3 97 41.2
Nn6g34499 Nelumbo nucifera HOM05D005007 ORTHO05D006053 7.4e-06 53.9 48 62.5


User provided reference genes

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