Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp7g17230 Schrenkiella parvula HOM05D000001 ORTHO05D009942 3.9e-171 604.7 314 100.0
AL7G37780 Arabidopsis lyrata HOM05D000001 ORTHO05D009942 7.9e-156 553.9 314 90.1
C01p25510 Brassica napus HOM05D000001 ORTHO05D009942 1.8e-155 552.7 314 91.1
BolC1t02502H Brassica oleracea HOM05D000001 ORTHO05D000003 1.8e-155 552.7 314 91.1
Thhalv10025772m.g Eutrema salsugineum HOM05D000001 ORTHO05D009942 6.7e-155 550.8 315 90.5
BcaC09g50430 Brassica carinata HOM05D000001 ORTHO05D009942 8.7e-155 550.4 314 90.4
BcaNung00139 Brassica carinata HOM05D000001 ORTHO05D009942 1.9e-154 549.3 314 89.8
A01p20340 Brassica napus HOM05D000001 ORTHO05D009942 1.6e-153 546.2 314 89.8
AT4G16850 Arabidopsis thaliana HOM05D000001 ORTHO05D009942 2.8e-153 545.4 314 89.8
Carub.0007s2447 Capsella rubella HOM05D000001 ORTHO05D009942 6.5e-150 534.3 314 87.3
BraA01t01964Z Brassica rapa HOM05D000001 ORTHO05D009942 1.4e-141 506.5 303 86.8
Aa31LG2G13040 Aethionema arabicum HOM05D000001 ORTHO05D009942 5.5e-125 451.4 316 75.0
THA.LOC104811819 Tarenaya hassleriana HOM05D000001 ORTHO05D009942 3.4e-98 362.5 307 64.2
CARHR223490 Cardamine hirsuta HOM05D000001 ORTHO05D009942 2.8e-92 342.8 272 70.6
Cpa.g.sc75.11 Carica papaya HOM05D000001 ORTHO05D009942 4.6e-63 245.7 291 46.0
Prupe.1G096000 Prunus persica HOM05D000001 ORTHO05D009942 2.5e-61 240.0 285 48.4
FAN25G3648 Fragaria x ananassa HOM05D000001 ORTHO05D009942 3.3e-61 239.6 285 49.5
FAN16G0931 Fragaria x ananassa HOM05D000001 ORTHO05D009942 4.3e-61 239.2 285 48.8
RcHm_v2.0_Chr5g0006011 Rosa chinensis HOM05D000001 ORTHO05D009942 4.3e-61 239.2 297 46.8
FvH4_3g13180 Fragaria vesca HOM05D000001 ORTHO05D009942 9.6e-61 238.0 285 48.4
FAN11G1677 Fragaria x ananassa HOM05D000001 ORTHO05D009942 1.6e-60 237.3 285 48.4
QL02p095851 Quercus lobata HOM05D000001 ORTHO05D009942 2.6e-58 229.9 290 43.8
Manes.08G144300 Manihot esculenta HOM05D000001 ORTHO05D009942 3.4e-58 229.6 294 43.9
Cfa013541 Carpinus fangiana HOM05D000001 ORTHO05D009942 1.7e-57 227.3 295 41.7
FAN21G0240 Fragaria x ananassa HOM05D008511 ORTHO05D010691 3.6e-52 209.5 257 48.2
MD13G1261300 Malus domestica HOM05D000001 ORTHO05D009942 6.2e-52 208.8 288 43.1
CANSAT01G1218 Cannabis sativa HOM05D000001 ORTHO05D009942 2.4e-51 206.8 293 41.3
Ciclev10008915m.g Citrus clementina HOM05D000001 ORTHO05D009942 2.6e-50 203.4 286 43.0
Potri.018G097900 Populus trichocarpa HOM05D000001 ORTHO05D009942 2.9e-49 199.9 283 41.7
CiPaw.07G187100 Carya illinoinensis HOM05D000001 ORTHO05D009942 4.9e-49 199.1 294 40.8
Thecc.09G162400 Theobroma cacao HOM05D000001 ORTHO05D009942 4.9e-49 199.1 291 42.3
Glyma.17G068100 Glycine max HOM05D000001 ORTHO05D009942 1.1e-48 198.0 292 41.8
Atru.chr7.517 Acer truncatum HOM05D000001 ORTHO05D009942 1.9e-48 197.2 280 41.4
Duzib168G2157 Durio zibethinus HOM05D000001 ORTHO05D009942 3.2e-48 196.4 299 41.8
Lj6g0018090 Lotus japonicus HOM05D000001 ORTHO05D009942 3.5e-47 193.0 292 39.4
ClCG11G012210 Citrullus lanatus HOM05D000001 ORTHO05D009942 2.3e-46 190.3 281 39.9
CsaV3_1G004210 Cucumis sativus L. HOM05D000001 ORTHO05D009942 8.7e-46 188.3 282 40.4
Lj4g0010912 Lotus japonicus HOM05D000001 ORTHO05D009942 1.5e-45 187.6 292 41.8
Sabra18G0084600 Salix brachista HOM05D000001 ORTHO05D009942 1.9e-45 187.2 266 40.2
Medtr4g129330 Medicago truncatula HOM05D000001 ORTHO05D009942 2.5e-45 186.8 282 40.8
Duzib187G0438 Durio zibethinus HOM05D000001 ORTHO05D009942 3.3e-45 186.4 287 39.7
MELO3C004032.2 Cucumis melo HOM05D000001 ORTHO05D009942 9.6e-45 184.9 283 40.6
VMungo1215G0291 Vigna mungo HOM05D000001 ORTHO05D009942 1.6e-44 184.1 291 39.5
Gohir.D05G007600 Gossypium hirsutum HOM05D000001 ORTHO05D009942 8.1e-44 181.8 289 39.4
Gorai.009G007700 Gossypium raimondii HOM05D000001 ORTHO05D009942 8.1e-44 181.8 289 39.4
Nn8g40269 Nelumbo nucifera HOM05D000001 ORTHO05D009942 8.1e-44 181.8 281 38.8
Gohir.A05G006700 Gossypium hirsutum HOM05D000001 ORTHO05D009942 2.4e-43 180.3 286 39.9
PGR004G0094 Punica granatum HOM05D000001 ORTHO05D009942 4.0e-43 179.5 290 40.3
Glyma.13G092300 Glycine max HOM05D000001 ORTHO05D009942 4.5e-42 176.0 282 39.7
Lalb_Chr07g0180131 Lupinus albus HOM05D000001 ORTHO05D009942 2.9e-41 173.3 305 36.1
arahy.Tifrunner.gnm1.ann1.HQFS40 Arachis hypogaea HOM05D000001 ORTHO05D009942 4.9e-41 172.6 282 38.7
Psat6g238680 Pisum sativum HOM05D000001 ORTHO05D009942 1.9e-40 170.6 293 37.2
Ca_21187_v3 Cicer arietinum L. HOM05D000001 ORTHO05D009942 3.2e-40 169.9 206 44.7
Medtr1g116000 Medicago truncatula HOM05D000001 ORTHO05D009942 3.2e-40 169.9 282 38.3
Phvul.001G010200 Phaseolus vulgaris HOM05D000001 ORTHO05D009942 9.3e-40 168.3 285 37.2
Glyma.14G069900 Glycine max HOM05D000001 ORTHO05D009942 1.8e-38 164.1 278 37.4
Solyc07g006410.1 Solanum lycopersicum HOM05D000001 ORTHO05D009942 3.0e-38 163.3 303 34.3
MBI14_g08066_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D009942 1.9e-37 160.6 288 35.4
Lj9P729T26 Lonicera japonica HOM05D000001 ORTHO05D009942 5.7e-37 159.1 285 34.0
Nn2g12578 Nelumbo nucifera HOM05D000001 ORTHO05D009942 9.6e-37 158.3 290 35.2
Psat0s236g0120 Pisum sativum HOM05D000001 ORTHO05D009942 2.4e-35 153.7 222 39.6
Sed0013089 Sechium edule HOM05D000001 ORTHO05D009942 2.3e-30 137.1 242 36.8
CAN.G584.60 Capsicum annuum HOM05D000001 ORTHO05D009942 1.5e-29 134.4 295 31.2
VMungo0647G1251 Vigna mungo HOM05D000001 ORTHO05D009942 1.9e-29 134.0 266 33.8
TPR.G10425 Trifolium pratense HOM05D000001 ORTHO05D009942 1.5e-26 124.4 187 41.7
TAR625G0513 Trochodendron aralioides HOM05D000001 ORTHO05D009942 2.2e-25 120.6 148 45.9
AUR62039972 Chenopodium quinoa HOM05D000001 ORTHO05D009942 5.5e-24 115.9 292 32.5
Ah.14g084030 Amaranthus hybridus HOM05D000001 ORTHO05D009942 2.7e-23 113.6 294 34.7
ATR0580G034 Amborella trichopoda HOM05D000001 ORTHO05D009942 2.7e-23 113.6 310 31.6
Nn2g12580 Nelumbo nucifera HOM05D000001 ORTHO05D009942 6.1e-23 112.5 208 34.6
Aqoxy7G03211 Aquilegia oxysepala HOM05D000001 ORTHO05D009942 1.1e-21 108.2 294 31.6
Sc08g0005400 Simmondsia chinensis HOM05D000001 ORTHO05D009942 2.6e-21 107.1 234 35.5
TWI32G0375 Tripterygium wilfordii HOM05D000001 ORTHO05D009942 4.3e-21 106.3 112 47.3
Ca_11326_v3 Cicer arietinum L. HOM05D000001 ORTHO05D009942 6.9e-19 99.0 146 39.7
AUR62040282 Chenopodium quinoa HOM05D007179 ORTHO05D009124 1.5e-18 97.8 280 30.7
PGSC0003DMG400027446 Solanum tuberosum HOM05D000001 ORTHO05D009942 3.4e-18 96.7 149 39.6
BcaB04g18393 Brassica carinata HOM05D000001 ORTHO05D009942 1.3e-17 94.7 70 74.3
Sopen07g002510 Solanum pennellii HOM05D000001 ORTHO05D009942 2.2e-17 94.0 159 35.8
Peaxi162Scf00457g00043 Petunia axillaris HOM05D000001 ORTHO05D009942 1.4e-16 91.3 165 33.9
Ciclev10006798m.g Citrus clementina HOM05D000001 ORTHO05D009942 4.2e-16 89.7 133 40.6
Ca_11327_v3 Cicer arietinum L. HOM05D000001 ORTHO05D009942 7.9e-15 85.5 147 37.4
Nitab4.5_0004017g0010 Nicotiana tabacum HOM05D000001 ORTHO05D009942 2.6e-13 80.5 164 34.1
ATR0580G065 Amborella trichopoda HOM05D004960 ORTHO05D004696 6.3e-12 75.9 292 27.7
ATR0580G174 Amborella trichopoda HOM05D004960 ORTHO05D004696 7.7e-10 68.9 298 25.2
MBI14_g30690_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D009942 1.0e-09 68.6 117 36.8
COL.COLO4_16055 Corchorus olitorius HOM05D000001 ORTHO05D009942 1.3e-09 68.2 112 37.5
HPP92_010759 Vanilla planifolia HOM05D004960 ORTHO05D004696 1.7e-09 67.8 221 27.6
THA.LOC104814356 Tarenaya hassleriana HOM05D001062 ORTHO05D000884 3.8e-09 66.6 278 27.0
THA.LOC104812705 Tarenaya hassleriana HOM05D001062 ORTHO05D000884 1.1e-08 65.1 298 25.2
THA.LOC104798556 Tarenaya hassleriana HOM05D001062 ORTHO05D000884 5.5e-08 62.8 278 25.9
CSS0022952 Camellia sinensis var. sinensis HOM05D012567 ORTHO05D004696 7.2e-08 62.4 311 25.1
Mapoly0036s0117 Marchantia polymorpha HOM05D001062 ORTHO05D000884 9.4e-08 62.0 305 24.3
TAR626G0702 Trochodendron aralioides HOM05D004960 ORTHO05D004696 9.4e-08 62.0 303 22.8
MBI14_g30692_MAGBIO Magnolia biondii HOM05D004960 ORTHO05D004696 1.2e-07 61.6 231 26.4
A09p35100 Brassica napus HOM05D001062 ORTHO05D000884 1.6e-07 61.2 225 27.1
TAR626G1729 Trochodendron aralioides HOM05D004960 ORTHO05D004696 2.1e-07 60.8 296 23.3
BcaC05g27144 Brassica carinata HOM05D001062 ORTHO05D000884 3.6e-07 60.1 225 27.1
C05p30280 Brassica napus HOM05D001062 ORTHO05D000884 3.6e-07 60.1 225 27.1
BolC5t31769H Brassica oleracea HOM05D001062 ORTHO05D000884 3.6e-07 60.1 225 27.1
BraA09t39042Z Brassica rapa HOM05D001062 ORTHO05D000884 3.6e-07 60.1 225 27.1
Haze_10109 Corylus avellana HOM05D004960 ORTHO05D004696 3.6e-07 60.1 223 24.2
MBI14_g30701_MAGBIO Magnolia biondii HOM05D004960 ORTHO05D004696 3.6e-07 60.1 306 22.5
Lsat_1_v5_gn_7_52601 Lactuca sativa HOM05D012567 ORTHO05D004696 6.1e-07 59.3 292 27.4
QL02p095902 Quercus lobata HOM05D004960 ORTHO05D004696 1.4e-06 58.2 225 27.1
Zm00001eb260060 Zea mays HOM05D001062 ORTHO05D000884 1.4e-06 58.2 287 26.5
BcaNung01744 Brassica carinata HOM05D001062 ORTHO05D000884 1.8e-06 57.8 249 26.5
Cfa013540 Carpinus fangiana HOM05D004960 ORTHO05D004696 1.8e-06 57.8 283 24.4
Dinv43330 Davidia involucrata HOM05D004960 ORTHO05D004696 2.3e-06 57.4 225 23.6
Aqoxy7G03205 Aquilegia oxysepala HOM05D004960 ORTHO05D004696 3.0e-06 57.0 288 25.3
Actinidia35989 Actinidia chinensis HOM05D004960 ORTHO05D004696 4.0e-06 56.6 181 30.4
TAR383G0345 Trochodendron aralioides HOM05D004960 ORTHO05D004696 6.7e-06 55.8 300 22.7
Migut.M01989 Erythranthe guttata HOM05D001062 ORTHO05D000884 8.8e-06 55.5 234 27.4
HanXRQChr03g0068521 Helianthus annuus HOM05D004960 ORTHO05D004696 8.8e-06 55.5 175 28.0


User provided reference genes

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