Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp7g16990 Schrenkiella parvula HOM05D005162 ORTHO05D007064 1.4e-190 669.5 337 100.0
Thhalv10025663m.g Eutrema salsugineum HOM05D005162 ORTHO05D007064 1.1e-184 649.8 337 96.4
A01p20180 Brassica napus HOM05D005162 ORTHO05D007064 1.9e-184 649.0 336 96.1
BraA01t01942Z Brassica rapa HOM05D005162 ORTHO05D007064 2.5e-184 648.7 336 95.8
BcaC09g50447 Brassica carinata HOM05D005162 ORTHO05D007064 9.6e-184 646.7 336 95.8
C01p25320 Brassica napus HOM05D005162 ORTHO05D007064 9.6e-184 646.7 336 95.8
BolC1t02482H Brassica oleracea HOM05D005162 ORTHO05D007064 1.7e-180 636.0 331 95.5
BcaNung03473 Brassica carinata HOM05D005162 ORTHO05D007064 1.4e-166 589.7 304 96.4
BcaNung00113 Brassica carinata HOM05D005162 ORTHO05D007064 2.4e-166 589.0 336 89.9
AL6G41220 Arabidopsis lyrata HOM05D005162 ORTHO05D007064 1.0e-164 583.6 338 87.0
THA.LOC104803191 Tarenaya hassleriana HOM05D005162 ORTHO05D007064 3.2e-163 578.6 321 88.8
AT4G06599 Arabidopsis thaliana HOM05D005162 ORTHO05D007064 9.3e-163 577.0 338 85.5
Aa31LG3G14040 Aethionema arabicum HOM05D005162 ORTHO05D007064 1.8e-161 572.8 340 84.7
CARHR287310 Cardamine hirsuta HOM05D005162 ORTHO05D007064 8.7e-161 570.5 334 85.3
Carub.0006s2628 Capsella rubella HOM05D005162 ORTHO05D007064 5.7e-160 567.8 318 88.4
Manes.07G021300 Manihot esculenta HOM05D005162 ORTHO05D007064 2.2e-159 565.8 337 82.8
Gohir.A03G192500 Gossypium hirsutum HOM05D005162 ORTHO05D007064 9.0e-158 560.5 337 81.6
Thecc.02G090800 Theobroma cacao HOM05D005162 ORTHO05D007064 9.0e-158 560.5 335 82.7
Duzib132G0282 Durio zibethinus HOM05D005162 ORTHO05D007064 5.9e-157 557.8 337 80.4
ECA234G0102 Erigeron canadensis HOM05D005162 ORTHO05D007064 7.7e-157 557.4 321 84.4
Gohir.D02G213500 Gossypium hirsutum HOM05D005162 ORTHO05D007064 7.7e-157 557.4 337 81.3
Gorai.005G241400 Gossypium raimondii HOM05D005162 ORTHO05D007064 1.3e-156 556.6 337 81.3
Ciclev10001794m.g Citrus clementina HOM05D005162 ORTHO05D007064 8.5e-156 553.9 320 84.4
HanXRQChr10g0294681 Helianthus annuus HOM05D005162 ORTHO05D007064 2.5e-155 552.4 333 83.5
TAR376G0995 Trochodendron aralioides HOM05D005162 ORTHO05D007064 2.5e-155 552.4 337 81.6
Atru.chr6.699 Acer truncatum HOM05D005162 ORTHO05D007064 5.5e-155 551.2 333 81.4
ClCG11G013410 Citrullus lanatus HOM05D005162 ORTHO05D007064 1.2e-154 550.1 338 80.8
COL.COLO4_11752 Corchorus olitorius HOM05D005162 ORTHO05D007064 2.1e-154 549.3 321 83.2
Potri.004G219300 Populus trichocarpa HOM05D005162 ORTHO05D007064 2.3e-153 545.8 337 79.2
MELO3C011838.2 Cucumis melo HOM05D005162 ORTHO05D007064 3.0e-153 545.4 337 80.1
CsaV3_5G029940 Cucumis sativus L. HOM05D005162 ORTHO05D007064 3.0e-153 545.4 337 80.1
Aqoxy6G00135 Aquilegia oxysepala HOM05D005162 ORTHO05D007064 3.9e-153 545.0 338 79.6
MSTRG.16505 Avicennia marina HOM05D005162 ORTHO05D007064 5.1e-153 544.7 336 79.8
Eucgr.G00398 Eucalyptus grandis HOM05D005162 ORTHO05D007064 5.1e-153 544.7 323 82.0
Sed0011379 Sechium edule HOM05D005162 ORTHO05D007064 1.1e-152 543.5 316 83.2
PGR042G0281 Punica granatum HOM05D005162 ORTHO05D007064 2.5e-152 542.3 319 83.7
Peaxi162Scf00011g00742 Petunia axillaris HOM05D005162 ORTHO05D007064 3.3e-152 542.0 337 78.3
CANSAT54G0278 Cannabis sativa HOM05D005162 ORTHO05D007064 2.2e-151 539.3 322 82.0
Cpa.g.sc38.29 Carica papaya HOM05D005162 ORTHO05D007064 2.2e-151 539.3 334 79.6
Cc02_g22900 Coffea canephora HOM05D005162 ORTHO05D007064 2.8e-151 538.9 332 78.9
PSO170G6393 Papaver somniferum HOM05D005162 ORTHO05D007064 2.8e-151 538.9 334 78.7
SalBow8G3448 Salvia bowleyana HOM05D005162 ORTHO05D007064 3.7e-151 538.5 335 79.4
DCAR_006685 Daucus carota HOM05D005162 ORTHO05D007064 4.8e-151 538.1 337 79.2
Lsat_1_v5_gn_5_105901 Lactuca sativa HOM05D005162 ORTHO05D007064 4.8e-151 538.1 338 80.5
arahy.Tifrunner.gnm1.ann1.R3RHS8 Arachis hypogaea HOM05D005162 ORTHO05D007064 4.1e-150 535.0 337 77.7
arahy.Tifrunner.gnm1.ann1.3Y07W7 Arachis hypogaea HOM05D005162 ORTHO05D007064 2.0e-149 532.7 337 77.4
CSS0000837 Camellia sinensis var. sinensis HOM05D005162 ORTHO05D007064 2.0e-149 532.7 337 78.0
Sc07g0004980 Simmondsia chinensis HOM05D005162 ORTHO05D007064 2.0e-149 532.7 338 80.5
Nn5g27579 Nelumbo nucifera HOM05D005162 ORTHO05D007064 3.4e-149 531.9 337 78.3
Lalb_Chr07g0185841 Lupinus albus HOM05D005162 ORTHO05D007064 7.7e-149 530.8 324 79.0
FvH4_5g28710 Fragaria vesca HOM05D005162 ORTHO05D007064 1.7e-148 529.6 336 78.3
CiPaw.05G051000 Carya illinoinensis HOM05D005162 ORTHO05D007064 2.2e-148 529.3 340 77.1
Cfa005485 Carpinus fangiana HOM05D005162 ORTHO05D007064 2.9e-148 528.9 340 78.2
Ah.03g137150 Amaranthus hybridus HOM05D005162 ORTHO05D007064 8.5e-148 527.3 323 78.3
HPP92_001076 Vanilla planifolia HOM05D005162 ORTHO05D007064 8.5e-148 527.3 340 77.4
FAN18G1533 Fragaria x ananassa HOM05D005162 ORTHO05D007064 1.1e-147 526.9 335 78.2
Phvul.002G248400 Phaseolus vulgaris HOM05D005162 ORTHO05D007064 1.1e-147 526.9 318 79.6
Sabra01G0166400 Salix brachista HOM05D005162 ORTHO05D007064 1.1e-147 526.9 373 71.8
FAN04G0484 Fragaria x ananassa HOM05D005162 ORTHO05D007064 1.4e-147 526.6 335 78.2
QL02p099940 Quercus lobata HOM05D005162 ORTHO05D007064 1.9e-147 526.2 319 80.6
RcHm_v2.0_Chr7g0220871 Rosa chinensis HOM05D005162 ORTHO05D007064 4.2e-147 525.0 336 77.7
VMungo0251G3523 Vigna mungo HOM05D005162 ORTHO05D007064 1.2e-146 523.5 335 76.1
Potri.003G011300 Populus trichocarpa HOM05D005162 ORTHO05D007064 2.1e-146 522.7 328 78.7
Glyma.05G168000 Glycine max HOM05D005162 ORTHO05D007064 3.6e-146 521.9 324 77.8
Lj4g0017883 Lotus japonicus HOM05D005162 ORTHO05D007064 3.6e-146 521.9 335 74.9
Prupe.1G576000 Prunus persica HOM05D005162 ORTHO05D007064 3.6e-146 521.9 320 79.7
PGSC0003DMG400024901 Solanum tuberosum HOM05D005162 ORTHO05D007064 1.4e-145 520.0 338 77.2
Solyc01g103850.4 Solanum lycopersicum HOM05D005162 ORTHO05D007064 1.8e-145 519.6 336 78.0
Nitab4.5_0000948g0210 Nicotiana tabacum HOM05D005162 ORTHO05D007064 2.3e-145 519.2 374 70.6
Sopen01g046230 Solanum pennellii HOM05D005162 ORTHO05D007064 2.3e-145 519.2 338 77.2
Glyma.08G126400 Glycine max HOM05D005162 ORTHO05D007064 6.7e-145 517.7 327 76.8
FAN08G0254 Fragaria x ananassa HOM05D005162 ORTHO05D007064 1.1e-144 516.9 348 75.3
Rhsim11G0126200 Rhododendron simsii HOM05D005162 ORTHO05D007064 1.7e-143 513.1 380 69.2
TPR.G6800 Trifolium pratense HOM05D005162 ORTHO05D007064 2.2e-143 512.7 336 75.0
Psat7g063440 Pisum sativum HOM05D005162 ORTHO05D007064 2.8e-143 512.3 339 74.3
FAN13G0306 Fragaria x ananassa HOM05D005162 ORTHO05D007064 3.7e-143 511.9 348 75.0
MD15G1431000 Malus domestica HOM05D005162 ORTHO05D007064 6.3e-143 511.1 320 77.8
ATR1134G078 Amborella trichopoda HOM05D005162 ORTHO05D007064 2.4e-142 509.2 315 78.7
AUR62041110 Chenopodium quinoa HOM05D005162 ORTHO05D007064 4.1e-142 508.4 377 69.2
TWI59G0454 Tripterygium wilfordii HOM05D005162 ORTHO05D007064 5.3e-142 508.1 317 79.2
Sabra03G0007400 Salix brachista HOM05D005162 ORTHO05D007064 7.0e-142 507.7 328 78.0
Ca_17836_v3 Cicer arietinum L. HOM05D005162 ORTHO05D007064 9.1e-142 507.3 338 74.0
Sabra03G0006800 Salix brachista HOM05D005162 ORTHO05D007064 9.1e-142 507.3 328 78.0
Migut.B00805 Erythranthe guttata HOM05D005162 ORTHO05D007064 7.7e-141 504.2 333 75.4
Medtr8g088640 Medicago truncatula HOM05D005162 ORTHO05D007064 1.3e-140 503.4 320 75.6
Actinidia39017 Actinidia chinensis HOM05D005162 ORTHO05D007064 2.2e-140 502.7 337 73.6
unitig_749.g14130 Utricularia gibba HOM05D005162 ORTHO05D007064 5.0e-140 501.5 320 75.0
Haze_01819 Corylus avellana HOM05D005162 ORTHO05D007064 8.5e-140 500.7 406 66.3
Dinv01848 Davidia involucrata HOM05D005162 ORTHO05D007064 1.6e-138 496.5 324 77.5
CSS0029208 Camellia sinensis var. sinensis HOM05D005162 ORTHO05D007064 2.7e-138 495.7 337 74.2
SGA_v2.0_scaffold338G49226 Striga asiatica HOM05D005162 ORTHO05D007064 3.3e-136 488.8 332 72.9
SMO358G0515 Selaginella moellendorffii HOM05D005162 ORTHO05D007064 4.8e-135 485.0 318 73.0
CDE08G1137 Ceratophyllum demersum HOM05D005162 ORTHO05D007064 5.9e-133 478.0 316 72.2
Nitab4.5_0002698g0020 Nicotiana tabacum HOM05D005162 ORTHO05D007064 3.6e-130 468.8 337 70.3
Os01g0875400 Oryza sativa ssp. japonica HOM05D005162 ORTHO05D007064 2.8e-127 459.1 347 66.0
Zm00001eb366430 Zea mays HOM05D005162 ORTHO05D007064 7.7e-125 451.1 348 64.7
Pp3c1_27970 Physcomitrium patens HOM05D005162 ORTHO05D007064 3.2e-123 445.7 343 63.8
Mapoly0019s0035 Marchantia polymorpha HOM05D005162 ORTHO05D007064 1.2e-122 443.7 331 66.8
HanXRQChr10g0294691 Helianthus annuus HOM05D005162 ORTHO05D007064 1.8e-118 429.9 249 85.5
GSVIVG01023290001 Vitis vinifera HOM05D005162 ORTHO05D007064 1.6e-117 426.8 250 82.8
Oeu032113.1 Olea europaea HOM05D005162 ORTHO05D007064 2.3e-116 422.9 248 81.5
vmacro01733 Vaccinium macrocarpon HOM05D005162 ORTHO05D007064 2.9e-116 422.5 250 81.2
Lj5C260G15 Lonicera japonica HOM05D005162 ORTHO05D007064 6.1e-114 414.8 243 81.9
CDE08G1585 Ceratophyllum demersum HOM05D005162 ORTHO05D007064 1.4e-110 403.7 307 65.8
MBI09_g07124_MAGBIO Magnolia biondii HOM05D005162 ORTHO05D007064 2.9e-108 396.0 338 64.2
Sabra03G0007100 Salix brachista HOM05D005162 ORTHO05D007064 8.6e-108 394.4 374 59.6
CsaV3_5G029930 Cucumis sativus L. HOM05D005162 ORTHO05D007064 1.5e-107 393.7 324 64.5
EL10Ac6g13975 Beta vulgaris HOM05D005162 ORTHO05D007064 5.2e-105 385.2 324 62.0
CAN.G798.38 Capsicum annuum HOM05D005162 ORTHO05D007064 1.3e-103 380.6 242 75.6
BcaNung03475 Brassica carinata HOM05D005162 ORTHO05D007064 1.1e-99 367.5 232 80.2
MCO16G506 Micromonas commoda HOM05D005162 ORTHO05D007064 2.3e-97 359.8 316 60.1
SEGI_09590 Sequoiadendron giganteum HOM05D005162 ORTHO05D007064 7.3e-91 338.2 198 81.3
Lsat_1_v5_gn_1_60880 Lactuca sativa HOM05D005162 ORTHO05D007064 8.1e-74 281.6 214 69.2
Haze_26359 Corylus avellana HOM05D005162 ORTHO05D007064 3.9e-68 262.7 344 43.3
Cre04.g228900 Chlamydomonas reinhardtii HOM05D005162 ORTHO05D007064 5.1e-68 262.3 263 50.2
CBR_g37945 Chara braunii HOM05D005162 ORTHO05D000497 2.1e-66 256.9 229 59.0
PRCOL_00006478 Prasinoderma coloniale HOM05D005162 ORTHO05D007064 3.1e-65 253.1 353 44.8
Oeu049835.1 Olea europaea HOM05D005162 ORTHO05D007064 2.1e-61 240.4 134 82.8
Hma1.2p1_1108F.1_g257830 Hydrangea macrophylla HOM05D005162 ORTHO05D007064 1.8e-60 237.3 136 82.4
AagrBONN_evm.TU.Sc2ySwM_368.1617 Anthoceros agrestis HOM05D005162 ORTHO05D007064 2.6e-56 223.4 250 47.2
EL10As26g24245 Beta vulgaris HOM05D005162 ORTHO05D007064 5.5e-54 215.7 130 77.7
FAN14G4428 Fragaria x ananassa HOM05D005162 ORTHO05D007064 1.6e-37 161.0 136 64.7
FvH4_6g22010 Fragaria vesca HOM05D005162 ORTHO05D007064 4.6e-37 159.5 136 64.0
FvH4_1g28920 Fragaria vesca HOM05D005162 ORTHO05D012874 5.1e-36 156.0 113 69.9
FAN09G4282 Fragaria x ananassa HOM05D005162 ORTHO05D007064 6.7e-36 155.6 137 63.5
EL10Ac9g22557 Beta vulgaris HOM05D005162 ORTHO05D007064 1.7e-34 151.0 102 73.5
CBR_g37944 Chara braunii HOM05D000019 ORTHO05D000048 2.2e-34 150.6 148 50.7
FAN06G2257 Fragaria x ananassa HOM05D005162 ORTHO05D007064 6.3e-34 149.1 106 70.8
FAN06G4878 Fragaria x ananassa HOM05D005162 ORTHO05D007064 6.3e-34 149.1 106 70.8
FvH4_7g16790 Fragaria vesca HOM05D005162 ORTHO05D007064 6.9e-33 145.6 106 68.9
Lsat_1_v5_gn_1_60640 Lactuca sativa HOM05D005162 ORTHO05D007064 2.9e-31 140.2 199 47.7
BraA03t14123Z Brassica rapa HOM05D005162 ORTHO05D007064 6.5e-31 139.0 72 95.8
MD08G1239400 Malus domestica HOM05D005162 ORTHO05D007064 8.5e-31 138.7 107 65.4
C07p48650 Brassica napus HOM05D005162 ORTHO05D007064 3.5e-24 116.7 66 92.4
FvH4_7g16160 Fragaria vesca HOM05D005162 ORTHO05D007064 2.5e-22 110.5 76 69.7
Zm00001eb146120 Zea mays HOM05D005162 ORTHO05D007064 2.5e-22 110.5 78 66.7
BcaB01g02499 Brassica carinata HOM05D005162 ORTHO05D027610 8.0e-21 105.5 60 86.7
Lsat_1_v5_gn_1_60800 Lactuca sativa HOM05D005162 ORTHO05D007064 1.4e-20 104.8 196 39.8
MD08G1239500 Malus domestica HOM05D005162 ORTHO05D007064 5.7e-19 99.4 61 80.3
Haze_10322 Corylus avellana HOM05D002370 ORTHO05D003878 7.5e-19 99.0 67 74.6
Solyc01g058590.1 Solanum lycopersicum HOM05D005162 ORTHO05D027610 1.7e-18 97.8 63 74.6
Sopen01g024260 Solanum pennellii HOM05D005162 ORTHO05D027610 1.6e-16 91.3 81 64.2
BcaB05g22040 Brassica carinata HOM05D005162 ORTHO05D094949 8.5e-15 85.5 50 86.0
BcaB07g32185 Brassica carinata HOM05D005162 ORTHO05D000065 8.5e-15 85.5 51 82.4
Cfa012958 Carpinus fangiana HOM05D005162 ORTHO05D027610 1.7e-10 71.2 58 62.1
CDE02G4559 Ceratophyllum demersum HOM05D000243 ORTHO05D000278 5.9e-08 62.8 55 56.4
SMO115G0039 Selaginella moellendorffii HOM05D005162 ORTHO05D376677 5.5e-06 56.2 163 29.4


User provided reference genes

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