Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp7g16980 Schrenkiella parvula HOM05D003761 ORTHO05D004412 1.4e-84 316.2 157 100.0
Thhalv10026465m.g Eutrema salsugineum HOM05D003761 ORTHO05D004412 4.0e-68 261.5 155 81.3
BcaNung03472 Brassica carinata HOM05D003761 ORTHO05D004412 1.2e-64 250.0 156 79.5
BcaC09g50449 Brassica carinata HOM05D003761 ORTHO05D004412 1.0e-63 246.9 157 80.3
C01p25300 Brassica napus HOM05D003761 ORTHO05D004412 1.0e-63 246.9 157 80.3
BolC1t02480H Brassica oleracea HOM05D003761 ORTHO05D004412 1.1e-62 243.4 157 79.6
BcaC06g33549 Brassica carinata HOM05D003761 ORTHO05D004412 5.7e-62 241.1 148 82.4
A03p50350 Brassica napus HOM05D003761 ORTHO05D004412 5.7e-62 241.1 148 82.4
C07p48660 Brassica napus HOM05D003761 ORTHO05D004412 5.7e-62 241.1 148 82.4
BolC7t45373H Brassica oleracea HOM05D003761 ORTHO05D004412 5.7e-62 241.1 148 82.4
BraA03t14124Z Brassica rapa HOM05D003761 ORTHO05D004412 1.3e-61 240.0 148 81.8
AL7G37500 Arabidopsis lyrata HOM05D003761 ORTHO05D004412 5.9e-59 231.1 150 78.7
BcaNung03474 Brassica carinata HOM05D003761 ORTHO05D004412 1.0e-58 230.3 148 79.1
BraA01t01941Z Brassica rapa HOM05D003761 ORTHO05D004412 1.3e-58 229.9 151 77.5
AT4G17215 Arabidopsis thaliana HOM05D003761 ORTHO05D004412 8.5e-58 227.3 150 77.3
Carub.0007s2420 Capsella rubella HOM05D003761 ORTHO05D004412 1.3e-55 219.9 147 76.2
CARHR223820 Cardamine hirsuta HOM05D003761 ORTHO05D004412 8.7e-55 217.2 150 75.3
BcaNung00112 Brassica carinata HOM05D003761 ORTHO05D004412 4.3e-54 214.9 140 77.1
BcaC06g31357 Brassica carinata HOM05D003761 ORTHO05D004412 5.5e-41 171.4 156 56.4
Sp2g12340 Schrenkiella parvula HOM05D003761 ORTHO05D004412 2.1e-40 169.5 154 58.4
BcaB07g30768 Brassica carinata HOM05D003761 ORTHO05D004412 1.4e-39 166.8 127 64.6
A06p44900 Brassica napus HOM05D003761 ORTHO05D004412 3.9e-39 165.2 132 62.9
BraA06t27361Z Brassica rapa HOM05D003761 ORTHO05D004412 3.9e-39 165.2 132 62.9
AT5G47635 Arabidopsis thaliana HOM05D003761 ORTHO05D004412 6.7e-39 164.5 154 57.1
CARHR173680 Cardamine hirsuta HOM05D003761 ORTHO05D004412 6.7e-39 164.5 133 63.9
AL8G10320 Arabidopsis lyrata HOM05D003761 ORTHO05D004412 2.0e-38 162.9 154 57.8
Thhalv10001056m.g Eutrema salsugineum HOM05D003761 ORTHO05D004412 2.0e-38 162.9 132 62.9
THA.LOC104806736 Tarenaya hassleriana HOM05D003761 ORTHO05D004412 2.0e-38 162.9 150 53.3
BcaC04g21612 Brassica carinata HOM05D003761 ORTHO05D004412 2.6e-38 162.5 153 54.9
C09p29870 Brassica napus HOM05D003761 ORTHO05D004412 2.6e-38 162.5 153 54.9
THA.LOC104798379 Tarenaya hassleriana HOM05D003761 ORTHO05D004412 2.6e-38 162.5 138 58.7
BraA05t19604Z Brassica rapa HOM05D003761 ORTHO05D004412 2.2e-37 159.5 158 55.1
Carub.0008s0015 Capsella rubella HOM05D003761 ORTHO05D004412 2.2e-37 159.5 154 54.5
Aa31LG9G5380 Aethionema arabicum HOM05D003761 ORTHO05D004412 2.8e-37 159.1 161 53.4
BcaB02g09051 Brassica carinata HOM05D003761 ORTHO05D004412 3.7e-37 158.7 138 58.0
A05p06360 Brassica napus HOM05D003761 ORTHO05D004412 4.8e-37 158.3 158 54.4
C07p31280 Brassica napus HOM05D003761 ORTHO05D004412 4.8e-37 158.3 137 59.1
BolC7t43669H Brassica oleracea HOM05D003761 ORTHO05D004412 4.8e-37 158.3 148 56.1
A09p23140 Brassica napus HOM05D003761 ORTHO05D004412 8.2e-37 157.5 128 63.3
BraA09t37917Z Brassica rapa HOM05D003761 ORTHO05D004412 8.2e-37 157.5 128 63.3
AL4G37770 Arabidopsis lyrata HOM05D003761 ORTHO05D004412 1.4e-36 156.8 157 54.1
BcaB02g09050 Brassica carinata HOM05D003761 ORTHO05D004412 2.4e-36 156.0 150 54.0
BolC4t22355H Brassica oleracea HOM05D003761 ORTHO05D004412 3.1e-36 155.6 158 53.8
BolC4t28284H Brassica oleracea HOM05D003761 ORTHO05D004412 5.3e-36 154.8 154 51.9
Thhalv10017342m.g Eutrema salsugineum HOM05D003761 ORTHO05D004412 5.3e-36 154.8 129 58.9
AT2G40113 Arabidopsis thaliana HOM05D003761 ORTHO05D004412 2.6e-35 152.5 156 51.3
A04p30050 Brassica napus HOM05D003761 ORTHO05D004412 2.6e-35 152.5 155 52.9
Sp4g22430 Schrenkiella parvula HOM05D003761 ORTHO05D004412 2.6e-35 152.5 136 57.4
Carub.0004s2229 Capsella rubella HOM05D003761 ORTHO05D004412 4.5e-35 151.8 157 51.6
BcaC02g07354 Brassica carinata HOM05D003761 ORTHO05D004412 5.9e-35 151.4 154 50.0
BraA04t18501Z Brassica rapa HOM05D003761 ORTHO05D004412 5.9e-35 151.4 155 52.3
Aa31LG5G19480 Aethionema arabicum HOM05D003761 ORTHO05D004412 1.7e-34 149.8 126 58.7
CARHR135090 Cardamine hirsuta HOM05D003761 ORTHO05D004412 1.5e-33 146.7 129 57.4
BcaB06g29129 Brassica carinata HOM05D003761 ORTHO05D004412 3.2e-33 145.6 128 57.0
BcaC06g34236 Brassica carinata HOM05D003761 ORTHO05D004412 7.2e-33 144.4 149 53.0
Sc24g0000400 Simmondsia chinensis HOM05D003761 ORTHO05D004412 2.0e-27 126.3 143 48.3
BolC9t55850H Brassica oleracea HOM05D003761 ORTHO05D004412 1.0e-26 124.0 90 63.3
Lalb_Chr13g0304361 Lupinus albus HOM05D003761 ORTHO05D004412 2.1e-24 116.3 132 43.9
Actinidia39257 Actinidia chinensis HOM05D003761 ORTHO05D004412 2.7e-24 115.9 165 40.0
Hma1.2p1_1175F.1_g263990 Hydrangea macrophylla HOM05D003761 ORTHO05D004412 8.0e-24 114.4 140 40.0
QL05p067831 Quercus lobata HOM05D003761 ORTHO05D004412 1.0e-23 114.0 133 44.4
EL10Ac8g20260 Beta vulgaris HOM05D003761 ORTHO05D004412 2.3e-23 112.8 142 43.0
COL.COLO4_31936 Corchorus olitorius HOM05D003761 ORTHO05D004412 2.3e-23 112.8 134 44.8
Duzib192G0597 Durio zibethinus HOM05D003761 ORTHO05D004412 2.3e-23 112.8 141 42.6
Glyma.17G005900 Glycine max HOM05D003761 ORTHO05D004412 5.2e-23 111.7 164 39.6
TPR.G5987 Trifolium pratense HOM05D003761 ORTHO05D004412 5.2e-23 111.7 135 45.2
Cpa.g.sc27.232 Carica papaya HOM05D003761 ORTHO05D004412 8.8e-23 110.9 132 41.7
Eucgr.L00155 Eucalyptus grandis HOM05D003761 ORTHO05D004412 8.8e-23 110.9 165 39.4
MD10G1338600 Malus domestica HOM05D003761 ORTHO05D004412 8.8e-23 110.9 156 39.1
Thecc.06G240300 Theobroma cacao HOM05D003761 ORTHO05D004412 1.2e-22 110.5 139 42.4
CANSAT56G1869 Cannabis sativa HOM05D003761 ORTHO05D004412 2.6e-22 109.4 165 38.8
AUR62021816 Chenopodium quinoa HOM05D003761 ORTHO05D004412 2.6e-22 109.4 139 43.2
vmacro03612 Vaccinium macrocarpon HOM05D003761 ORTHO05D004412 2.6e-22 109.4 141 38.3
Cfa000041 Carpinus fangiana HOM05D003761 ORTHO05D004412 5.7e-22 108.2 133 43.6
Ciclev10016770m.g Citrus clementina HOM05D003761 ORTHO05D004412 5.7e-22 108.2 164 37.8
Lalb_Chr15g0088211 Lupinus albus HOM05D003761 ORTHO05D004412 5.7e-22 108.2 161 40.4
PGR042G2523 Punica granatum HOM05D003761 ORTHO05D004412 5.7e-22 108.2 140 42.1
arahy.Tifrunner.gnm1.ann1.YY2BB8 Arachis hypogaea HOM05D003761 ORTHO05D004412 7.5e-22 107.8 146 41.8
MD05G1360900 Malus domestica HOM05D003761 ORTHO05D004412 7.5e-22 107.8 154 37.0
arahy.Tifrunner.gnm1.ann1.UZ71G8 Arachis hypogaea HOM05D003761 ORTHO05D004412 9.8e-22 107.5 145 42.1
Actinidia11903 Actinidia chinensis HOM05D003761 ORTHO05D004412 1.7e-21 106.7 137 41.6
CiPaw.09G108600 Carya illinoinensis HOM05D003761 ORTHO05D004412 1.7e-21 106.7 132 45.5
Lj2C256G8 Lonicera japonica HOM05D003761 ORTHO05D004412 1.7e-21 106.7 130 42.3
SGA_v2.0_scaffold49G18223 Striga asiatica HOM05D003761 ORTHO05D004412 1.7e-21 106.7 131 44.3
Manes.09G083000 Manihot esculenta HOM05D003761 ORTHO05D004412 2.2e-21 106.3 135 43.7
TAR626G0912 Trochodendron aralioides HOM05D003761 ORTHO05D004412 2.2e-21 106.3 133 43.6
Prupe.4G004300 Prunus persica HOM05D003761 ORTHO05D004412 2.8e-21 105.9 150 38.7
CSS0009294 Camellia sinensis var. sinensis HOM05D003761 ORTHO05D004412 3.7e-21 105.5 133 40.6
CSS0045719 Camellia sinensis var. sinensis HOM05D003761 ORTHO05D004412 3.7e-21 105.5 133 40.6
Lj6g0023004 Lotus japonicus HOM05D003761 ORTHO05D004412 3.7e-21 105.5 140 39.3
Nn1g07502 Nelumbo nucifera HOM05D003761 ORTHO05D004412 3.7e-21 105.5 136 42.6
Haze_07014 Corylus avellana HOM05D003761 ORTHO05D004412 4.8e-21 105.1 164 37.8
Eucgr.E03855 Eucalyptus grandis HOM05D003761 ORTHO05D004412 4.8e-21 105.1 136 41.9
Gohir.A06G204100 Gossypium hirsutum HOM05D003761 ORTHO05D004412 6.3e-21 104.8 137 41.6
Lj4g0001357 Lotus japonicus HOM05D003761 ORTHO05D004412 6.3e-21 104.8 137 40.9
Psat4g002880 Pisum sativum HOM05D003761 ORTHO05D004412 6.3e-21 104.8 171 38.6
Actinidia02285 Actinidia chinensis HOM05D000829 ORTHO05D000690 8.3e-21 104.4 130 42.3
Aa31LG2G12410 Aethionema arabicum HOM05D003761 ORTHO05D004412 8.3e-21 104.4 123 43.9
Rhsim13G0141000 Rhododendron simsii HOM05D003761 ORTHO05D004412 8.3e-21 104.4 164 35.4
vmacro03611 Vaccinium macrocarpon HOM05D003761 ORTHO05D004412 8.3e-21 104.4 137 38.0
vmacro23224 Vaccinium macrocarpon HOM05D003761 ORTHO05D004412 8.3e-21 104.4 137 38.0
AUR62012843 Chenopodium quinoa HOM05D003761 ORTHO05D004412 1.1e-20 104.0 140 42.9
Ca_20995_v3 Cicer arietinum L. HOM05D003761 ORTHO05D004412 1.1e-20 104.0 138 42.8
ECA248G3040 Erigeron canadensis HOM05D003761 ORTHO05D004412 1.4e-20 103.6 133 42.9
Eucgr.L00154 Eucalyptus grandis HOM05D003761 ORTHO05D004412 1.4e-20 103.6 136 41.9
FAN25G2178 Fragaria x ananassa HOM05D003761 ORTHO05D004412 1.8e-20 103.2 142 43.0
Gorai.010G248800 Gossypium raimondii HOM05D003761 ORTHO05D004412 1.8e-20 103.2 136 41.2
SGA_v2.0_scaffold7G03701 Striga asiatica HOM05D003761 ORTHO05D004412 1.8e-20 103.2 162 39.5
Gohir.D06G217400 Gossypium hirsutum HOM05D003761 ORTHO05D004412 2.4e-20 102.8 136 41.2
MSTRG.14590 Avicennia marina HOM05D003761 ORTHO05D004412 3.1e-20 102.4 138 40.6
SGA_v2.0_scaffold186G40120 Striga asiatica HOM05D003761 ORTHO05D004412 3.1e-20 102.4 159 35.8
HanXRQChr15g0470241 Helianthus annuus HOM05D003761 ORTHO05D004412 4.1e-20 102.1 124 45.2
MBI18_g42884_MAGBIO Magnolia biondii HOM05D003761 ORTHO05D004412 4.1e-20 102.1 149 40.3
Medtr4g133932 Medicago truncatula HOM05D003761 ORTHO05D004412 4.1e-20 102.1 144 40.3
GSVIVG01005138001 Vitis vinifera HOM05D003761 ORTHO05D004412 4.1e-20 102.1 129 43.4
Atru.chr1.2273 Acer truncatum HOM05D003761 ORTHO05D004412 7.0e-20 101.3 133 42.1
Oeu057021.1 Olea europaea HOM05D003761 ORTHO05D004412 9.1e-20 100.9 129 38.8
FvH4_3g00370 Fragaria vesca HOM05D003761 ORTHO05D004412 2.0e-19 99.8 140 40.7
Oeu025960.1 Olea europaea HOM05D003761 ORTHO05D004412 2.7e-19 99.4 158 35.4
VMungo1215G0779 Vigna mungo HOM05D003761 ORTHO05D004412 2.7e-19 99.4 162 36.4
FAN21G2431 Fragaria x ananassa HOM05D003761 ORTHO05D004412 3.5e-19 99.0 141 41.1
TWI38G2030 Tripterygium wilfordii HOM05D003761 ORTHO05D004412 3.5e-19 99.0 139 40.3
Dinv15342 Davidia involucrata HOM05D003761 ORTHO05D004412 5.9e-19 98.2 124 41.9
Phvul.003G086700 Phaseolus vulgaris HOM05D003761 ORTHO05D004412 5.9e-19 98.2 136 39.0
Sopen11g006960 Solanum pennellii HOM05D003761 ORTHO05D004412 5.9e-19 98.2 146 36.3
Lsat_1_v5_gn_7_13080 Lactuca sativa HOM05D003761 ORTHO05D004412 7.7e-19 97.8 129 40.3
Aqoxy4G01086 Aquilegia oxysepala HOM05D003761 ORTHO05D004412 1.3e-18 97.1 137 39.4
CAN.G1186.30 Capsicum annuum HOM05D003761 ORTHO05D004412 1.3e-18 97.1 173 31.8
Lsat_1_v5_gn_1_130120 Lactuca sativa HOM05D003761 ORTHO05D004412 1.3e-18 97.1 126 42.9
Os10g0208600 Oryza sativa ssp. japonica HOM05D003761 ORTHO05D004412 1.7e-18 96.7 143 39.9
Sabra06G0004500 Salix brachista HOM05D003761 ORTHO05D004412 2.3e-18 96.3 133 38.3
TWI38G1412 Tripterygium wilfordii HOM05D003761 ORTHO05D004412 2.3e-18 96.3 155 37.4
C04p67800 Brassica napus HOM05D003761 ORTHO05D004412 2.9e-18 95.9 80 56.2
Potri.006G005600 Populus trichocarpa HOM05D003761 ORTHO05D004412 2.9e-18 95.9 156 35.9
SalBow8G1906 Salvia bowleyana HOM05D003761 ORTHO05D004412 2.9e-18 95.9 133 39.1
Migut.H01629 Erythranthe guttata HOM05D003761 ORTHO05D004412 3.8e-18 95.5 136 37.5
MSTRG.13107 Avicennia marina HOM05D003761 ORTHO05D004412 5.0e-18 95.1 137 36.5
DCAR_030834 Daucus carota HOM05D003761 ORTHO05D004412 6.5e-18 94.7 155 36.8
MBI18_g27019_MAGBIO Magnolia biondii HOM05D003761 ORTHO05D004412 6.5e-18 94.7 136 40.4
Potri.016G006200 Populus trichocarpa HOM05D003761 ORTHO05D004412 6.5e-18 94.7 137 38.7
PGR004G2813 Punica granatum HOM05D003761 ORTHO05D004412 1.1e-17 94.0 144 37.5
Sed0021615 Sechium edule HOM05D003761 ORTHO05D004412 1.1e-17 94.0 139 39.6
PGSC0003DMG400013274 Solanum tuberosum HOM05D003761 ORTHO05D004412 1.1e-17 94.0 140 37.1
HPP92_024932 Vanilla planifolia HOM05D003761 ORTHO05D004412 1.1e-17 94.0 159 39.0
Solyc11g012170.1 Solanum lycopersicum HOM05D003761 ORTHO05D004412 1.5e-17 93.6 140 37.1
HPP92_024936 Vanilla planifolia HOM05D003761 ORTHO05D004412 1.9e-17 93.2 159 39.0
Sabra16G0011000 Salix brachista HOM05D003761 ORTHO05D004412 2.5e-17 92.8 158 37.3
MELO3C025526.2 Cucumis melo HOM05D003761 ORTHO05D004412 3.3e-17 92.4 136 39.0
HanXRQChr01g0003591 Helianthus annuus HOM05D003761 ORTHO05D004412 3.3e-17 92.4 142 35.9
Oeu002779.1 Olea europaea HOM05D003761 ORTHO05D004412 3.3e-17 92.4 138 38.4
PSO541G3650 Papaver somniferum HOM05D003761 ORTHO05D004412 3.3e-17 92.4 136 40.4
CsaV3_1G015780 Cucumis sativus L. HOM05D003761 ORTHO05D004412 4.2e-17 92.0 136 39.0
CsaV3_UNG065500 Cucumis sativus L. HOM05D003761 ORTHO05D004412 4.2e-17 92.0 136 39.0
Sed0014180 Sechium edule HOM05D003761 ORTHO05D004412 9.5e-17 90.9 136 38.2
Ah.09g233900 Amaranthus hybridus HOM05D003761 ORTHO05D004412 1.2e-16 90.5 139 39.6
Cc09_g00350 Coffea canephora HOM05D003761 ORTHO05D004412 1.2e-16 90.5 146 36.3
Peaxi162Scf00558g00515 Petunia axillaris HOM05D003761 ORTHO05D004412 2.8e-16 89.4 135 37.8
MSTRG.7132 Avicennia marina HOM05D003761 ORTHO05D004412 3.6e-16 89.0 136 35.3
PSO675G1588 Papaver somniferum HOM05D003761 ORTHO05D004412 3.6e-16 89.0 164 35.4
ClCG01G010750 Citrullus lanatus HOM05D003761 ORTHO05D004412 8.0e-16 87.8 136 38.2
Hma1.2p1_1175F.1_g263980 Hydrangea macrophylla HOM05D003761 ORTHO05D004412 1.0e-15 87.4 92 43.5
CDE10G1059 Ceratophyllum demersum HOM05D003761 ORTHO05D004412 2.3e-15 86.3 132 34.8
Nitab4.5_0000143g0280 Nicotiana tabacum HOM05D003761 ORTHO05D004412 4.0e-15 85.5 127 37.8
Sopen11g007440 Solanum pennellii HOM05D003761 ORTHO05D004412 4.0e-15 85.5 129 43.4
MBI19_g14888_MAGBIO Magnolia biondii HOM05D003761 ORTHO05D004412 5.2e-15 85.1 123 41.5
Solyc11g012705.2 Solanum lycopersicum HOM05D003761 ORTHO05D004412 6.8e-15 84.7 129 44.2
Cpa.g.sc27.234 Carica papaya HOM05D003761 ORTHO05D004412 8.9e-15 84.3 87 43.7
Oeu025400.1 Olea europaea HOM05D003761 ORTHO05D004412 1.2e-14 84.0 130 34.6
PGSC0003DMG400013298 Solanum tuberosum HOM05D003761 ORTHO05D004412 1.2e-14 84.0 129 44.2
Peaxi162Scf00442g00073 Petunia axillaris HOM05D003761 ORTHO05D004412 1.3e-13 80.5 136 38.2
Sc05g0009870 Simmondsia chinensis HOM05D003761 ORTHO05D004412 1.3e-13 80.5 92 44.6
Migut.M01442 Erythranthe guttata HOM05D003761 ORTHO05D004412 3.7e-13 79.0 138 38.4
Nitab4.5_0001198g0070 Nicotiana tabacum HOM05D003761 ORTHO05D004412 3.7e-13 79.0 126 34.9
CAN.G1156.14 Capsicum annuum HOM05D003761 ORTHO05D004412 4.9e-13 78.6 130 38.5
Zm00001eb050510 Zea mays HOM05D003761 ORTHO05D004412 1.1e-12 77.4 152 36.2
Os10g0206500 Oryza sativa ssp. japonica HOM05D003761 ORTHO05D004412 1.6e-11 73.6 169 32.0
unitig_52.g17560 Utricularia gibba HOM05D003761 ORTHO05D004412 2.0e-11 73.2 191 29.8
ATR0827G170 Amborella trichopoda HOM05D003761 ORTHO05D004412 2.8e-08 62.8 91 35.2
BcaC03g16979 Brassica carinata HOM05D003761 ORTHO05D039658 1.0e-07 60.8 63 49.2
C02p48790 Brassica napus HOM05D003761 ORTHO05D039658 4.0e-07 58.9 94 37.2


User provided reference genes

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