Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp7g16490 Schrenkiella parvula HOM05D004168 ORTHO05D004999 2.0e-149 532.3 257 100.0
Thhalv10026045m.g Eutrema salsugineum HOM05D004168 ORTHO05D004999 1.4e-134 483.0 257 89.5
Carub.0007s2373 Capsella rubella HOM05D004168 ORTHO05D004999 5.7e-128 461.1 258 86.8
CARHR224370 Cardamine hirsuta HOM05D004168 ORTHO05D004999 2.6e-125 452.2 257 85.6
AL7G36940 Arabidopsis lyrata HOM05D004168 ORTHO05D004999 2.2e-124 449.1 258 85.3
AT4G17650 Arabidopsis thaliana HOM05D004168 ORTHO05D004999 7.2e-123 444.1 258 83.7
Aa31LG6G400 Aethionema arabicum HOM05D004168 ORTHO05D004999 1.6e-122 443.0 257 84.4
BcaNung06715 Brassica carinata HOM05D004168 ORTHO05D004999 1.0e-121 440.3 257 84.8
C01p11320 Brassica napus HOM05D004168 ORTHO05D004999 3.0e-121 438.7 258 85.3
BraA01t00914Z Brassica rapa HOM05D004168 ORTHO05D004999 2.4e-118 429.1 260 84.6
BolC1t01097H Brassica oleracea HOM05D001479 ORTHO05D001401 1.3e-116 423.3 249 85.1
BcaC09g51623 Brassica carinata HOM05D004168 ORTHO05D004999 1.7e-116 422.9 259 83.4
A01p09710 Brassica napus HOM05D004168 ORTHO05D004999 3.8e-116 421.8 254 84.6
BcaNung00072 Brassica carinata HOM05D004168 ORTHO05D004999 2.7e-114 415.6 257 80.5
BraA08t33308Z Brassica rapa HOM05D004168 ORTHO05D004999 8.0e-114 414.1 260 83.1
BcaB04g18436 Brassica carinata HOM05D004168 ORTHO05D004999 2.6e-112 409.1 263 80.2
A08p13270 Brassica napus HOM05D004168 ORTHO05D004999 1.6e-109 399.8 260 81.5
THA.LOC104812820 Tarenaya hassleriana HOM05D004168 ORTHO05D004999 1.6e-109 399.8 257 74.3
BcaC07g38091 Brassica carinata HOM05D004168 ORTHO05D004999 6.1e-98 361.3 257 74.3
Gohir.A05G202600 Gossypium hirsutum HOM05D004168 ORTHO05D004999 1.3e-87 327.0 257 61.1
TWI36G1266 Tripterygium wilfordii HOM05D004168 ORTHO05D004999 1.3e-87 327.0 257 62.3
Ciclev10002229m.g Citrus clementina HOM05D004168 ORTHO05D004999 4.9e-87 325.1 258 62.8
Manes.05G174100 Manihot esculenta HOM05D004168 ORTHO05D004999 1.4e-86 323.6 253 62.1
COL.COLO4_26513 Corchorus olitorius HOM05D004168 ORTHO05D004999 4.1e-86 322.0 260 61.5
Gorai.009G212100 Gossypium raimondii HOM05D004168 ORTHO05D004999 9.2e-86 320.9 257 60.3
Manes.18G037500 Manihot esculenta HOM05D004168 ORTHO05D004999 9.2e-86 320.9 253 62.1
Gohir.D05G205800 Gossypium hirsutum HOM05D004168 ORTHO05D004999 1.2e-85 320.5 257 60.3
Thecc.08G006900 Theobroma cacao HOM05D004168 ORTHO05D004999 2.0e-85 319.7 264 60.2
Peaxi162Scf00252g00056 Petunia axillaris HOM05D004168 ORTHO05D004999 3.5e-85 318.9 260 60.0
Eucgr.F00224 Eucalyptus grandis HOM05D004168 ORTHO05D004999 7.8e-85 317.8 257 58.8
CsaV3_4G034330 Cucumis sativus L. HOM05D004168 ORTHO05D004999 6.6e-84 314.7 257 62.3
Potri.002G126000 Populus trichocarpa HOM05D004168 ORTHO05D004999 1.1e-83 313.9 254 61.4
Nitab4.5_0002760g0060 Nicotiana tabacum HOM05D004168 ORTHO05D004999 2.5e-83 312.8 264 60.6
TAR628G1263 Trochodendron aralioides HOM05D004168 ORTHO05D004999 5.6e-83 311.6 252 59.5
arahy.Tifrunner.gnm1.ann1.TVNS6S Arachis hypogaea HOM05D004168 ORTHO05D004999 2.8e-82 309.3 263 59.7
ClCG05G019900 Citrullus lanatus HOM05D004168 ORTHO05D004999 2.8e-82 309.3 250 62.4
MD08G1101200 Malus domestica HOM05D004168 ORTHO05D004999 2.8e-82 309.3 263 61.6
TAR376G0672 Trochodendron aralioides HOM05D004168 ORTHO05D004999 2.8e-82 309.3 252 61.1
CANSAT25G0219 Cannabis sativa HOM05D004168 ORTHO05D004999 3.6e-82 308.9 254 60.2
Cpa.g.sc13.291 Carica papaya HOM05D004168 ORTHO05D004999 4.7e-82 308.5 244 62.7
RcHm_v2.0_Chr6g0307961 Rosa chinensis HOM05D004168 ORTHO05D004999 8.1e-82 307.8 259 61.0
PGSC0003DMG401007971 Solanum tuberosum HOM05D004168 ORTHO05D004999 8.1e-82 307.8 253 59.7
GSVIVG01009491001 Vitis vinifera HOM05D004168 ORTHO05D004999 1.1e-81 307.4 257 59.5
FAN15G2652 Fragaria x ananassa HOM05D004168 ORTHO05D004999 1.4e-81 307.0 266 58.3
Duzib116G0163 Durio zibethinus HOM05D004168 ORTHO05D004999 1.8e-81 306.6 258 60.1
Gorai.010G019900 Gossypium raimondii HOM05D004168 ORTHO05D004999 3.1e-81 305.8 258 58.5
FvH4_2g34410 Fragaria vesca HOM05D004168 ORTHO05D004999 5.2e-81 305.1 261 59.8
FAN20G1800 Fragaria x ananassa HOM05D004168 ORTHO05D004999 5.2e-81 305.1 261 60.2
FAN24G2672 Fragaria x ananassa HOM05D004168 ORTHO05D004999 5.2e-81 305.1 261 59.8
Nitab4.5_0000287g0250 Nicotiana tabacum HOM05D004168 ORTHO05D004999 5.2e-81 305.1 265 59.6
Sabra02G0098700 Salix brachista HOM05D004168 ORTHO05D004999 6.8e-81 304.7 254 60.2
Solyc04g078890.4 Solanum lycopersicum HOM05D004168 ORTHO05D004999 8.9e-81 304.3 258 59.7
GSVIVG01024177001 Vitis vinifera HOM05D004168 ORTHO05D004999 1.2e-80 303.9 181 76.8
Sopen04g032490 Solanum pennellii HOM05D004168 ORTHO05D004999 1.5e-80 303.5 258 59.7
Gohir.D06G017000 Gossypium hirsutum HOM05D004168 ORTHO05D004999 2.0e-80 303.1 258 57.8
PGR083G0647 Punica granatum HOM05D004168 ORTHO05D004999 2.0e-80 303.1 262 58.4
QL12p001799 Quercus lobata HOM05D004168 ORTHO05D004999 2.6e-80 302.8 177 77.4
vmacro21519 Vaccinium macrocarpon HOM05D004168 ORTHO05D004999 5.8e-80 301.6 254 58.7
Prupe.1G435200 Prunus persica HOM05D004168 ORTHO05D004999 7.5e-80 301.2 263 59.3
Lj1g0018004 Lotus japonicus HOM05D004168 ORTHO05D004999 9.8e-80 300.8 269 56.5
Glyma.04G039100 Glycine max HOM05D004168 ORTHO05D004999 1.7e-79 300.1 258 59.7
MSTRG.1350 Avicennia marina HOM05D004168 ORTHO05D004999 2.9e-79 299.3 261 57.5
CiPaw.11G099200 Carya illinoinensis HOM05D004168 ORTHO05D004999 2.9e-79 299.3 241 62.7
arahy.Tifrunner.gnm1.ann1.IT5IHR Arachis hypogaea HOM05D004168 ORTHO05D004999 4.9e-79 298.5 257 58.4
Cc10_g04130 Coffea canephora HOM05D004168 ORTHO05D004999 4.9e-79 298.5 264 57.2
Sed0010101 Sechium edule HOM05D004168 ORTHO05D004999 4.9e-79 298.5 257 59.5
arahy.Tifrunner.gnm1.ann1.85Q9C5 Arachis hypogaea HOM05D004168 ORTHO05D004999 6.4e-79 298.1 257 58.4
Dinv35958 Davidia involucrata HOM05D004168 ORTHO05D004999 8.3e-79 297.7 246 58.9
CiPaw.12G069100 Carya illinoinensis HOM05D004168 ORTHO05D004999 1.1e-78 297.4 240 61.7
Rhsim06G0050100 Rhododendron simsii HOM05D004168 ORTHO05D004999 1.1e-78 297.4 257 57.6
TWI56G0083 Tripterygium wilfordii HOM05D004168 ORTHO05D004999 1.4e-78 297.0 247 59.1
Sc02g0007150 Simmondsia chinensis HOM05D004168 ORTHO05D004999 3.2e-78 295.8 257 57.2
MBI15_g10497_MAGBIO Magnolia biondii HOM05D004168 ORTHO05D004999 4.1e-78 295.4 252 59.9
VMungo1309G0269 Vigna mungo HOM05D004168 ORTHO05D004999 5.4e-78 295.0 262 57.3
CSS0013402 Camellia sinensis var. sinensis HOM05D004168 ORTHO05D004999 7.1e-78 294.7 220 65.5
Ca_15947_v3 Cicer arietinum L. HOM05D004168 ORTHO05D004999 7.1e-78 294.7 269 55.0
Glyma.06G040100 Glycine max HOM05D004168 ORTHO05D004999 7.1e-78 294.7 259 57.9
CSS0011562 Camellia sinensis var. sinensis HOM05D004168 ORTHO05D004999 1.6e-77 293.5 220 65.0
Aqoxy1G00522 Aquilegia oxysepala HOM05D004168 ORTHO05D004999 2.7e-77 292.7 251 57.8
SGA_v2.0_scaffold14G07004 Striga asiatica HOM05D004168 ORTHO05D004999 2.7e-77 292.7 262 57.6
Lj4A773T42 Lonicera japonica HOM05D004168 ORTHO05D004999 4.6e-77 292.0 263 54.4
Sed0009126 Sechium edule HOM05D004168 ORTHO05D004999 6.0e-77 291.6 292 53.4
Hund06209 Selenicereus undatus HOM05D004168 ORTHO05D004999 7.8e-77 291.2 256 56.2
Oeu043572.2 Olea europaea HOM05D004168 ORTHO05D004999 1.0e-76 290.8 261 55.9
PGR031G2881 Punica granatum HOM05D004168 ORTHO05D004999 3.0e-76 289.3 270 56.3
Lalb_Chr23g0267171 Lupinus albus HOM05D004168 ORTHO05D004999 3.9e-76 288.9 255 57.6
TPR.G24157 Trifolium pratense HOM05D004168 ORTHO05D004999 3.9e-76 288.9 257 55.6
Migut.C00576 Erythranthe guttata HOM05D004168 ORTHO05D004999 5.1e-76 288.5 258 55.4
CAN.G1030.1 Capsicum annuum HOM05D004168 ORTHO05D004999 6.6e-76 288.1 260 56.2
ECA247G0458 Erigeron canadensis HOM05D004168 ORTHO05D004999 8.6e-76 287.7 270 52.2
PSO384G0569 Papaver somniferum HOM05D004168 ORTHO05D004999 1.1e-75 287.3 256 55.9
Medtr3g101750 Medicago truncatula HOM05D004168 ORTHO05D004999 3.3e-75 285.8 257 55.3
Psat5g043040 Pisum sativum HOM05D004168 ORTHO05D004999 4.3e-75 285.4 260 57.7
Actinidia38059 Actinidia chinensis HOM05D004168 ORTHO05D004999 7.3e-75 284.6 184 70.1
Actinidia29872 Actinidia chinensis HOM05D004168 ORTHO05D004999 1.6e-74 283.5 184 69.0
AUR62016672 Chenopodium quinoa HOM05D004168 ORTHO05D004999 3.6e-74 282.3 218 60.6
AUR62011389 Chenopodium quinoa HOM05D004168 ORTHO05D004999 6.2e-74 281.6 218 60.6
Rhsim07G0228300 Rhododendron simsii HOM05D004168 ORTHO05D004999 1.1e-73 280.8 254 56.3
EL10Ac9g21781 Beta vulgaris HOM05D004168 ORTHO05D004999 1.4e-73 280.4 212 61.3
HPP92_018641 Vanilla planifolia HOM05D004168 ORTHO05D004999 1.4e-73 280.4 200 68.5
HanXRQChr09g0267591 Helianthus annuus HOM05D004168 ORTHO05D004999 1.8e-73 280.0 250 54.0
Os01g0772400 Oryza sativa ssp. japonica HOM05D004168 ORTHO05D004999 1.8e-73 280.0 174 72.4
Hund00296 Selenicereus undatus HOM05D004168 ORTHO05D004999 3.1e-73 279.3 209 61.7
Hund00303 Selenicereus undatus HOM05D004168 ORTHO05D004999 3.1e-73 279.3 209 61.7
DCAR_012778 Daucus carota HOM05D004168 ORTHO05D004999 5.2e-73 278.5 257 53.3
EL10As14g24078 Beta vulgaris HOM05D004168 ORTHO05D004999 7.6e-72 274.6 218 59.6
HanXRQChr02g0039451 Helianthus annuus HOM05D004168 ORTHO05D004999 7.6e-72 274.6 186 64.5
unitig_19.g30012 Utricularia gibba HOM05D004168 ORTHO05D004999 2.9e-71 272.7 180 68.9
unitig_8.g5020 Utricularia gibba HOM05D004168 ORTHO05D004999 2.9e-71 272.7 180 68.9
Lsat_1_v5_gn_1_21041 Lactuca sativa HOM05D004168 ORTHO05D004999 4.9e-71 271.9 184 64.1
DCAR_019452 Daucus carota HOM05D004168 ORTHO05D004999 1.4e-70 270.4 256 52.0
CDE06G0679 Ceratophyllum demersum HOM05D004168 ORTHO05D004999 1.9e-70 270.0 208 61.5
Lsat_1_v5_gn_4_125661 Lactuca sativa HOM05D004168 ORTHO05D004999 1.9e-70 270.0 246 55.3
DCAR_008795 Daucus carota HOM05D004168 ORTHO05D004999 5.4e-70 268.5 182 64.8
Ah.01g019770 Amaranthus hybridus HOM05D004168 ORTHO05D004999 3.0e-68 262.7 213 58.7
MD15G1082400 Malus domestica HOM05D004168 ORTHO05D004999 1.5e-67 260.4 263 53.6
Aqoxy2G00574 Aquilegia oxysepala HOM05D004168 ORTHO05D004999 2.5e-67 259.6 169 69.2
MELO3C016753.2 Cucumis melo HOM05D004168 ORTHO05D004999 5.6e-67 258.5 216 63.0
Haze_17522 Corylus avellana HOM05D004168 ORTHO05D004999 2.1e-66 256.5 217 60.8
ECA232G1782 Erigeron canadensis HOM05D004168 ORTHO05D004999 2.1e-66 256.5 252 51.2
Gohir.A06G018666 Gossypium hirsutum HOM05D004168 ORTHO05D004999 2.4e-65 253.1 258 51.2
Cfa012532 Carpinus fangiana HOM05D004168 ORTHO05D002421 3.1e-65 252.7 231 55.4
FAN27G1360 Fragaria x ananassa HOM05D004168 ORTHO05D004999 6.9e-65 251.5 150 74.0
Cfa018557 Carpinus fangiana HOM05D004168 ORTHO05D004999 1.2e-64 250.8 221 61.1
CANSAT11G0235 Cannabis sativa HOM05D004168 ORTHO05D004999 5.8e-64 248.4 264 51.1
Nn2g14539 Nelumbo nucifera HOM05D004168 ORTHO05D004999 4.9e-63 245.4 147 74.8
MSTRG.22261 Avicennia marina HOM05D004168 ORTHO05D004999 8.4e-63 244.6 262 48.5
SalBow7G4699 Salvia bowleyana HOM05D004168 ORTHO05D004999 2.4e-62 243.0 219 55.7
Zm00001eb370050 Zea mays HOM05D004168 ORTHO05D004999 8.7e-60 234.6 138 76.1
Phvul.009G065300 Phaseolus vulgaris HOM05D004168 ORTHO05D004999 7.3e-59 231.5 222 54.5
Duzib093G1913 Durio zibethinus HOM05D004168 ORTHO05D004999 4.9e-55 218.8 258 48.4
Eucgr.F02339 Eucalyptus grandis HOM05D004168 ORTHO05D004999 4.2e-54 215.7 221 52.0
Mapoly0004s0036 Marchantia polymorpha HOM05D004168 ORTHO05D004999 6.0e-53 211.8 172 56.4
Eucgr.F02343 Eucalyptus grandis HOM05D004168 ORTHO05D004999 1.8e-52 210.3 152 65.1
Eucgr.L02367 Eucalyptus grandis HOM05D004168 ORTHO05D004999 3.9e-52 209.1 260 44.6
Pp3c21_16730 Physcomitrium patens HOM05D004168 ORTHO05D004999 9.6e-51 204.5 165 58.2
SMO340G0178 Selaginella moellendorffii HOM05D004168 ORTHO05D004999 2.8e-50 203.0 165 57.6
SEGI_05154 Sequoiadendron giganteum HOM05D004168 ORTHO05D004999 8.1e-50 201.4 144 61.8
CBR_g66636 Chara braunii HOM05D004168 ORTHO05D004999 3.1e-49 199.5 240 42.9
Lalb_Chr11g0062631 Lupinus albus HOM05D004168 ORTHO05D004999 4.0e-49 199.1 111 80.2
AagrBONN_evm.TU.Sc2ySwM_228.4844 Anthoceros agrestis HOM05D004168 ORTHO05D004999 1.2e-48 197.6 171 55.6
Pp3c22_1290 Physcomitrium patens HOM05D004168 ORTHO05D004999 1.1e-46 191.0 167 54.5
PSO339G0184 Papaver somniferum HOM05D004168 ORTHO05D004999 2.1e-45 186.8 255 42.4
vmacro04448 Vaccinium macrocarpon HOM05D004168 ORTHO05D004999 3.5e-45 186.0 243 43.6
arahy.Tifrunner.gnm1.ann1.F8YVUF Arachis hypogaea HOM05D004168 ORTHO05D004999 5.7e-35 152.1 143 53.1
Zm00001eb151870 Zea mays HOM05D004168 ORTHO05D004999 4.5e-32 142.5 91 71.4
arahy.Tifrunner.gnm1.ann1.ZKL3GY Arachis hypogaea HOM05D004168 ORTHO05D004999 2.5e-30 136.7 84 72.6
arahy.Tifrunner.gnm1.ann1.RZ37P0 Arachis hypogaea HOM05D004168 ORTHO05D004999 2.1e-29 133.7 214 38.8
SEGI_12997 Sequoiadendron giganteum HOM05D004168 ORTHO05D004999 2.7e-29 133.3 94 67.0
AUR62007226 Chenopodium quinoa HOM05D004168 ORTHO05D004999 8.7e-28 128.3 131 53.4
Cre07.g345700 Chlamydomonas reinhardtii HOM05D004168 ORTHO05D004999 1.8e-25 120.6 213 31.0
SEGI_03271 Sequoiadendron giganteum HOM05D004168 ORTHO05D004999 1.2e-24 117.9 82 57.3
arahy.Tifrunner.gnm1.ann1.H0AX16 Arachis hypogaea HOM05D004168 ORTHO05D004999 2.0e-24 117.1 71 76.1
Atru.chr13.696 Acer truncatum HOM05D004168 ORTHO05D004999 2.6e-24 116.7 63 82.5
MCO12G423 Micromonas commoda HOM05D004168 ORTHO05D004999 5.5e-22 109.0 141 38.3
Oeu049977.1 Olea europaea HOM05D004168 ORTHO05D004999 4.6e-21 105.9 77 63.6
Sc15g0006120 Simmondsia chinensis HOM05D004168 ORTHO05D003195 1.4e-17 94.4 65 64.6
arahy.Tifrunner.gnm1.ann1.TNR0C9 Arachis hypogaea HOM05D004168 ORTHO05D004999 2.6e-16 90.1 67 56.7
arahy.Tifrunner.gnm1.ann1.CBC9PR Arachis hypogaea HOM05D004168 ORTHO05D004999 1.2e-13 81.3 86 44.2
COL.COLO4_26873 Corchorus olitorius HOM05D004168 ORTHO05D004999 5.2e-12 75.9 39 79.5
Gohir.A06G060332 Gossypium hirsutum HOM05D004168 ORTHO05D004999 5.7e-11 72.4 52 57.7
Lj6g0018320 Lotus japonicus HOM05D004168 ORTHO05D004999 2.8e-10 70.1 51 60.8
Gohir.D01G114560 Gossypium hirsutum HOM05D004168 ORTHO05D004999 2.0e-08 63.9 51 52.9
Gorai.002G139800 Gossypium raimondii HOM05D004168 ORTHO05D004999 2.0e-08 63.9 52 51.9
Dinv39314 Davidia involucrata HOM05D003792 ORTHO05D003195 8.5e-07 58.5 101 41.6


User provided reference genes

Program Settings