Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp7g15110 Schrenkiella parvula HOM05D006466 ORTHO05D008084 7.9e-122 440.7 255 100.0
AL7G38350 Arabidopsis lyrata HOM05D006466 ORTHO05D008084 2.9e-100 369.0 257 87.2
AL7G38400 Arabidopsis lyrata HOM05D006466 ORTHO05D008084 2.9e-100 369.0 257 87.2
Carub.0007s2494 Capsella rubella HOM05D006466 ORTHO05D008084 1.1e-99 367.1 256 87.1
Thhalv10026056m.g Eutrema salsugineum HOM05D006466 ORTHO05D008084 4.7e-98 361.7 259 86.1
CARHR222950 Cardamine hirsuta HOM05D006466 ORTHO05D008084 1.3e-95 353.6 256 84.0
BcaNung02868 Brassica carinata HOM05D006466 ORTHO05D008084 4.1e-94 348.6 257 84.0
Aa31LG2G12660 Aethionema arabicum HOM05D006466 ORTHO05D008084 2.6e-93 345.9 258 84.9
AT4G16535 Arabidopsis thaliana HOM05D006466 ORTHO05D008084 9.4e-91 337.4 257 80.5
BcaC06g33488 Brassica carinata HOM05D006466 ORTHO05D008084 9.1e-86 320.9 259 77.2
A03p49940 Brassica napus HOM05D006466 ORTHO05D008084 2.0e-85 319.7 264 75.8
BraA03t14087Z Brassica rapa HOM05D006466 ORTHO05D008084 2.0e-85 319.7 264 75.8
C07p47980 Brassica napus HOM05D006466 ORTHO05D008084 3.5e-85 318.9 257 77.0
BolC7t45321H Brassica oleracea HOM05D006466 ORTHO05D008084 3.5e-85 318.9 257 77.0
Ciclev10005762m.g Citrus clementina HOM05D006466 ORTHO05D008084 1.3e-55 220.7 252 53.6
TWI81G0148 Tripterygium wilfordii HOM05D006466 ORTHO05D008084 7.8e-53 211.5 259 51.7
Sabra01G0094900 Salix brachista HOM05D006466 ORTHO05D008084 1.3e-52 210.7 263 52.1
Potri.001G123200 Populus trichocarpa HOM05D006466 ORTHO05D008084 1.7e-52 210.3 263 52.5
QL12p012545 Quercus lobata HOM05D006466 ORTHO05D008084 5.1e-52 208.8 253 52.2
Eucgr.D02068 Eucalyptus grandis HOM05D006466 ORTHO05D008084 8.6e-52 208.0 248 52.0
CiPaw.11G153200 Carya illinoinensis HOM05D006466 ORTHO05D008084 5.2e-49 198.7 261 50.6
Cfa012739 Carpinus fangiana HOM05D006466 ORTHO05D008084 8.9e-49 198.0 259 51.0
Actinidia27463 Actinidia chinensis HOM05D006466 ORTHO05D008084 7.6e-48 194.9 265 49.4
Haze_07889 Corylus avellana HOM05D006466 ORTHO05D008084 3.7e-47 192.6 259 49.4
PGSC0003DMG401004755 Solanum tuberosum HOM05D006466 ORTHO05D008084 3.7e-47 192.6 255 47.1
FAN04G2180 Fragaria x ananassa HOM05D006466 ORTHO05D008084 6.4e-47 191.8 253 51.4
Solyc08g078740.1 Solanum lycopersicum HOM05D006466 ORTHO05D008084 8.3e-47 191.4 255 47.1
Sopen08g027210 Solanum pennellii HOM05D006466 ORTHO05D008084 8.3e-47 191.4 255 47.1
CsaV3_5G004180 Cucumis sativus L. HOM05D006466 ORTHO05D008084 1.1e-46 191.0 252 49.2
ClCG01G004000 Citrullus lanatus HOM05D006466 ORTHO05D008084 1.4e-46 190.7 252 49.6
MELO3C005537.2 Cucumis melo HOM05D006466 ORTHO05D008084 1.9e-46 190.3 252 49.2
Gohir.A12G217700 Gossypium hirsutum HOM05D006466 ORTHO05D008084 2.4e-46 189.9 247 49.4
Gorai.008G235900 Gossypium raimondii HOM05D006466 ORTHO05D008084 2.4e-46 189.9 247 49.4
Lsat_1_v5_gn_3_521 Lactuca sativa HOM05D006466 ORTHO05D008084 3.2e-46 189.5 249 49.4
Thecc.03G253200 Theobroma cacao HOM05D006466 ORTHO05D008084 3.2e-46 189.5 260 48.1
MSTRG.12091 Avicennia marina HOM05D006466 ORTHO05D008084 7.1e-46 188.3 258 48.4
Gohir.D12G220200 Gossypium hirsutum HOM05D006466 ORTHO05D008084 7.1e-46 188.3 247 49.0
Manes.01G079600 Manihot esculenta HOM05D006466 ORTHO05D008084 7.1e-46 188.3 251 50.2
Hma1.2p1_2380F.1_g320960 Hydrangea macrophylla HOM05D006466 ORTHO05D008084 1.2e-45 187.6 268 50.4
Medtr4g101030 Medicago truncatula HOM05D006466 ORTHO05D008084 1.2e-45 187.6 263 50.6
DCAR_008489 Daucus carota HOM05D005079 ORTHO05D006362 3.5e-45 186.0 252 48.4
FAN18G0606 Fragaria x ananassa HOM05D006466 ORTHO05D008084 1.0e-44 184.5 261 49.8
Ah.12g056750 Amaranthus hybridus HOM05D006466 ORTHO05D008084 1.3e-44 184.1 261 46.4
FvH4_5g18710 Fragaria vesca HOM05D006466 ORTHO05D008084 2.3e-44 183.3 261 49.8
Atru.chr2.1841 Acer truncatum HOM05D006466 ORTHO05D008084 5.1e-44 182.2 254 47.2
RcHm_v2.0_Chr7g0203001 Rosa chinensis HOM05D006466 ORTHO05D008084 8.6e-44 181.4 265 46.8
GSVIVG01001313001 Vitis vinifera HOM05D006466 ORTHO05D008084 8.6e-44 181.4 263 48.3
FAN13G1623 Fragaria x ananassa HOM05D006466 ORTHO05D008084 1.5e-43 180.6 262 48.5
PGR031G1557 Punica granatum HOM05D006466 ORTHO05D008084 1.5e-43 180.6 266 44.7
TPR.G37616 Trifolium pratense HOM05D006466 ORTHO05D008084 1.5e-43 180.6 259 48.6
Cpa.g.sc29.144 Carica papaya HOM05D006466 ORTHO05D008084 1.9e-43 180.3 254 47.6
Nitab4.5_0000312g0170 Nicotiana tabacum HOM05D006466 ORTHO05D008084 2.5e-43 179.9 255 45.1
Dinv39131 Davidia involucrata HOM05D006466 ORTHO05D008084 1.2e-42 177.6 262 46.2
unitig_61.g26196 Utricularia gibba HOM05D006466 ORTHO05D008084 1.6e-42 177.2 259 46.7
Nitab4.5_0008481g0010 Nicotiana tabacum HOM05D006466 ORTHO05D008084 2.8e-42 176.4 257 43.6
Sed0026776 Sechium edule HOM05D006466 ORTHO05D008084 2.8e-42 176.4 252 47.6
Sed0012351 Sechium edule HOM05D006466 ORTHO05D008084 1.1e-41 174.5 247 47.0
Manes.15G178400 Manihot esculenta HOM05D006466 ORTHO05D008084 1.4e-41 174.1 240 48.3
CDE02G4728 Ceratophyllum demersum HOM05D006466 ORTHO05D008084 4.0e-41 172.6 252 43.3
Manes.15G178500 Manihot esculenta HOM05D006466 ORTHO05D008084 6.8e-41 171.8 240 46.2
Nn1g01036 Nelumbo nucifera HOM05D006466 ORTHO05D008084 6.8e-41 171.8 253 50.2
Lj1A353T9 Lonicera japonica HOM05D006466 ORTHO05D008084 8.9e-41 171.4 252 44.4
ECA232G3467 Erigeron canadensis HOM05D006466 ORTHO05D008084 2.9e-39 166.4 246 46.3
Migut.A00968 Erythranthe guttata HOM05D006466 ORTHO05D008084 3.8e-39 166.0 258 44.6
BcaC04g19403 Brassica carinata HOM05D006466 ORTHO05D008084 4.9e-39 165.6 143 78.3
BolC9t58475H Brassica oleracea HOM05D006466 ORTHO05D008084 4.9e-39 165.6 143 78.3
Peaxi162Scf00002g00172 Petunia axillaris HOM05D006466 ORTHO05D008084 8.4e-39 164.9 268 44.8
Phvul.003G219800 Phaseolus vulgaris HOM05D006466 ORTHO05D008084 1.4e-38 164.1 257 47.9
SHI10480 Sapria himalayana HOM05D006466 ORTHO05D008084 1.9e-38 163.7 252 45.2
SGA_v2.0_scaffold120G32877 Striga asiatica HOM05D006466 ORTHO05D008084 3.2e-38 162.9 259 44.4
SalBow6G4398 Salvia bowleyana HOM05D006466 ORTHO05D008084 2.7e-37 159.8 190 50.0
arahy.Tifrunner.gnm1.ann1.LISY29 Arachis hypogaea HOM05D006466 ORTHO05D008084 4.6e-37 159.1 254 42.9
Prupe.5G071300 Prunus persica HOM05D006466 ORTHO05D008084 4.6e-37 159.1 186 54.3
arahy.Tifrunner.gnm1.ann1.HK6I2L Arachis hypogaea HOM05D006466 ORTHO05D008084 6.0e-37 158.7 262 43.9
Lalb_Chr16g0389331 Lupinus albus HOM05D006466 ORTHO05D008084 6.0e-37 158.7 193 54.4
Psat4g071640 Pisum sativum HOM05D006466 ORTHO05D008084 1.7e-36 157.1 213 48.4
Eucgr.D02058 Eucalyptus grandis HOM05D006466 ORTHO05D008084 3.0e-36 156.4 261 41.8
HPP92_014482 Vanilla planifolia HOM05D006466 ORTHO05D008084 5.1e-36 155.6 271 41.0
Rhsim07G0108000 Rhododendron simsii HOM05D006466 ORTHO05D008084 6.6e-36 155.2 183 51.9
arahy.Tifrunner.gnm1.ann1.VT8LY8 Arachis hypogaea HOM05D006466 ORTHO05D008084 8.7e-36 154.8 256 44.1
CANSAT21G1921 Cannabis sativa HOM05D006466 ORTHO05D008084 1.5e-35 154.1 251 44.6
PSO170G1975 Papaver somniferum HOM05D006466 ORTHO05D008084 1.9e-35 153.7 251 45.8
PSO528G0015 Papaver somniferum HOM05D006466 ORTHO05D008084 1.9e-35 153.7 257 46.3
VMungo0251G3296 Vigna mungo HOM05D006466 ORTHO05D008084 2.5e-35 153.3 256 47.7
ATR0193G040 Amborella trichopoda HOM05D006466 ORTHO05D008084 3.3e-35 152.9 205 46.3
FAN08G0853 Fragaria x ananassa HOM05D006466 ORTHO05D008084 4.3e-35 152.5 259 44.0
Lj4g0024258 Lotus japonicus HOM05D006466 ORTHO05D008084 4.3e-35 152.5 261 44.1
Aqoxy6G01886 Aquilegia oxysepala HOM05D006466 ORTHO05D008084 6.2e-34 148.7 254 44.9
TAR375G0032 Trochodendron aralioides HOM05D006466 ORTHO05D008084 1.1e-33 147.9 256 42.2
arahy.Tifrunner.gnm1.ann1.MY6G43 Arachis hypogaea HOM05D006466 ORTHO05D008084 5.3e-33 145.6 258 42.6
MD04G1088600 Malus domestica HOM05D006466 ORTHO05D008084 6.9e-33 145.2 260 40.8
Os10g0507500 Oryza sativa ssp. japonica HOM05D006466 ORTHO05D008084 2.6e-32 143.3 263 46.0
GSVIVG01030884001 Vitis vinifera HOM05D006466 ORTHO05D008084 5.8e-32 142.1 254 41.3
AUR62007505 Chenopodium quinoa HOM05D006466 ORTHO05D008084 1.3e-31 141.0 255 42.0
Nn6g33981 Nelumbo nucifera HOM05D006466 ORTHO05D008084 2.9e-31 139.8 187 49.7
SEGI_30297 Sequoiadendron giganteum HOM05D006466 ORTHO05D008084 7.1e-30 135.2 247 46.6
Oeu019590.1 Olea europaea HOM05D006466 ORTHO05D008084 2.1e-29 133.7 257 40.1
Cc08_g12600 Coffea canephora HOM05D006466 ORTHO05D008084 3.5e-29 132.9 224 40.6
Lj8A452G56 Lonicera japonica HOM05D006466 ORTHO05D008084 1.3e-28 131.0 254 38.2
AagrBONN_evm.TU.Sc2ySwM_228.639 Anthoceros agrestis HOM05D007188 ORTHO05D009102 7.3e-27 125.2 257 37.7
CDE11G0010 Ceratophyllum demersum HOM05D006466 ORTHO05D008084 8.1e-26 121.7 218 39.9
Ca_21959_v3 Cicer arietinum L. HOM05D006466 ORTHO05D008084 1.1e-25 121.3 252 38.1
AUR62039958 Chenopodium quinoa HOM05D006466 ORTHO05D008084 1.4e-25 120.9 255 38.4
BraA04t17310Z Brassica rapa HOM05D006466 ORTHO05D008084 4.5e-24 115.9 89 76.4
Mapoly0015s0012 Marchantia polymorpha HOM05D006466 ORTHO05D008084 4.5e-24 115.9 268 36.6
C03p73400 Brassica napus HOM05D006466 ORTHO05D008084 2.2e-23 113.6 95 65.3
BcaC01g01648 Brassica carinata HOM05D006466 ORTHO05D008084 4.9e-23 112.5 97 63.9
C09p56080 Brassica napus HOM05D006466 ORTHO05D008084 4.9e-23 112.5 89 83.1
Glyma.17G140900 Glycine max HOM05D006466 ORTHO05D008084 4.9e-23 112.5 259 39.4
arahy.Tifrunner.gnm1.ann1.Y2DLV0 Arachis hypogaea HOM05D006466 ORTHO05D008084 1.3e-20 104.4 124 50.8
arahy.Tifrunner.gnm1.ann1.AC5BZW Arachis hypogaea HOM05D006466 ORTHO05D008084 8.7e-20 101.7 197 40.1
C03p59450 Brassica napus HOM05D006466 ORTHO05D008084 1.6e-18 97.4 54 85.2
Pp3c3_19850 Physcomitrium patens HOM05D006466 ORTHO05D008084 6.2e-18 95.5 230 37.8
Zm00001eb044010 Zea mays HOM05D006466 ORTHO05D008084 4.0e-17 92.8 62 74.2
A01p37510 Brassica napus HOM05D006466 ORTHO05D008084 1.2e-16 91.3 54 81.5
Oeu039628.1 Olea europaea HOM05D006466 ORTHO05D008084 2.6e-16 90.1 55 78.2
AT2G03010 Arabidopsis thaliana HOM05D007773 ORTHO05D008084 4.5e-16 89.4 230 38.7
HanXRQChr02g0051581 Helianthus annuus HOM05D006466 ORTHO05D008084 4.2e-14 82.8 98 54.1
Eucgr.L01522 Eucalyptus grandis HOM05D006466 ORTHO05D008084 7.1e-14 82.0 50 78.0
arahy.Tifrunner.gnm1.ann1.W2BU8F Arachis hypogaea HOM05D004339 ORTHO05D002389 5.1e-12 75.9 188 37.2
Actinidia05202 Actinidia chinensis HOM05D006466 ORTHO05D008084 4.3e-11 72.8 92 50.0
arahy.Tifrunner.gnm1.ann1.X9JZY0 Arachis hypogaea HOM05D004687 ORTHO05D006002 2.6e-08 63.5 60 58.3
Cre06.g300200 Chlamydomonas reinhardtii HOM05D006466 ORTHO05D008084 1.3e-07 61.2 197 33.5
Sc22g0000810 Simmondsia chinensis HOM05D006466 ORTHO05D008084 6.5e-07 58.9 99 41.4
CBR_g29445 Chara braunii HOM05D006466 ORTHO05D008084 7.2e-06 55.5 98 42.9


User provided reference genes

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