Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp7g14990 Schrenkiella parvula HOM05D004607 ORTHO05D005836 4.6e-92 341.3 179 100.0
AL7G38550 Arabidopsis lyrata HOM05D004607 ORTHO05D005836 3.1e-88 328.6 179 94.4
Carub.0007s2507 Capsella rubella HOM05D004607 ORTHO05D005836 9.9e-87 323.6 179 93.9
AT4G16444 Arabidopsis thaliana HOM05D004607 ORTHO05D005836 7.1e-85 317.4 179 91.1
BraA08t33239Z Brassica rapa HOM05D004607 ORTHO05D005836 1.5e-82 309.7 179 89.9
BolC8t48369H Brassica oleracea HOM05D004607 ORTHO05D005836 2.5e-82 308.9 179 89.4
CARHR222820 Cardamine hirsuta HOM05D004607 ORTHO05D005836 2.5e-82 308.9 179 88.3
A03p49830 Brassica napus HOM05D004607 ORTHO05D005836 6.9e-80 300.8 183 86.9
BraA03t14078Z Brassica rapa HOM05D004607 ORTHO05D005836 6.9e-80 300.8 183 86.9
BolC7t45311H Brassica oleracea HOM05D004607 ORTHO05D005836 1.2e-79 300.1 181 86.2
C07p47890 Brassica napus HOM05D004607 ORTHO05D005836 9.9e-79 297.0 182 86.3
A08p12190 Brassica napus HOM05D004607 ORTHO05D005836 2.2e-78 295.8 204 78.9
BcaC07g37988 Brassica carinata HOM05D004607 ORTHO05D005836 1.1e-77 293.5 180 86.7
Aa31LG2G12510 Aethionema arabicum HOM05D004607 ORTHO05D005836 2.7e-76 288.9 179 81.0
Thhalv10026376m.g Eutrema salsugineum HOM05D004607 ORTHO05D005836 2.7e-76 288.9 179 87.2
BcaNung00194 Brassica carinata HOM05D004607 ORTHO05D005836 7.4e-66 254.2 179 78.2
THA.LOC104826422 Tarenaya hassleriana HOM05D004607 ORTHO05D005836 1.8e-64 249.6 180 72.8
THA.LOC104819160 Tarenaya hassleriana HOM05D004607 ORTHO05D005836 9.0e-64 247.3 179 70.4
Potri.005G101300 Populus trichocarpa HOM05D004607 ORTHO05D005836 6.5e-54 214.5 180 63.9
RcHm_v2.0_Chr2g0097211 Rosa chinensis HOM05D004607 ORTHO05D005836 1.1e-53 213.8 176 63.1
MD02G1117000 Malus domestica HOM05D004607 ORTHO05D005836 1.4e-53 213.4 176 63.1
MD02G1116800 Malus domestica HOM05D004607 ORTHO05D005836 7.1e-53 211.1 176 62.5
Cpa.g.c27001.3 Carica papaya HOM05D004607 ORTHO05D005836 1.0e-51 207.2 171 63.2
TWI09G0436 Tripterygium wilfordii HOM05D004607 ORTHO05D005836 1.8e-51 206.5 170 62.4
CiPaw.08G181500 Carya illinoinensis HOM05D004607 ORTHO05D005836 2.3e-51 206.1 173 62.4
CsaV3_3G000280 Cucumis sativus L. HOM05D004607 ORTHO05D005836 5.1e-51 204.9 177 59.3
Prupe.7G182100 Prunus persica HOM05D004607 ORTHO05D005836 1.5e-50 203.4 175 62.9
FAN28G2666 Fragaria x ananassa HOM05D004607 ORTHO05D005836 1.9e-50 203.0 176 60.8
FvH4_1g10350 Fragaria vesca HOM05D004607 ORTHO05D005836 4.3e-50 201.8 176 61.4
TWI73G0051 Tripterygium wilfordii HOM05D004607 ORTHO05D005836 4.3e-50 201.8 170 62.9
Eucgr.I00568 Eucalyptus grandis HOM05D004607 ORTHO05D005836 9.7e-50 200.7 174 59.8
CANSAT80G1685 Cannabis sativa HOM05D004607 ORTHO05D005836 6.3e-49 198.0 170 59.4
CANSAT80G2088 Cannabis sativa HOM05D004607 ORTHO05D005836 6.3e-49 198.0 170 59.4
PGR042G1958 Punica granatum HOM05D004607 ORTHO05D005836 4.1e-48 195.3 176 56.8
Hma1.2p1_0300F.1_g118020 Hydrangea macrophylla HOM05D004607 ORTHO05D005836 3.4e-47 192.2 177 57.6
Lsat_1_v5_gn_3_68061 Lactuca sativa HOM05D004607 ORTHO05D005836 1.7e-46 189.9 174 57.5
Dinv08165 Davidia involucrata HOM05D004607 ORTHO05D005836 2.9e-46 189.1 173 58.4
CSS0013050 Camellia sinensis var. sinensis HOM05D004607 ORTHO05D005836 6.5e-46 188.0 169 58.0
CiPaw.07G003100 Carya illinoinensis HOM05D004607 ORTHO05D005836 8.5e-46 187.6 165 58.2
Dinv40187 Davidia involucrata HOM05D004607 ORTHO05D005836 8.5e-46 187.6 173 59.0
Actinidia17362 Actinidia chinensis HOM05D004607 ORTHO05D005836 9.4e-45 184.1 174 56.3
Glyma.09G198400 Glycine max HOM05D004607 ORTHO05D005836 9.4e-45 184.1 174 56.3
GSVIVG01026644001 Vitis vinifera HOM05D004607 ORTHO05D005836 1.2e-44 183.7 170 57.6
CSS0035278 Camellia sinensis var. sinensis HOM05D004607 ORTHO05D005836 1.6e-44 183.3 171 56.7
Thecc.01G005800 Theobroma cacao HOM05D004607 ORTHO05D005836 1.6e-44 183.3 154 62.3
Peaxi162Scf01051g00133 Petunia axillaris HOM05D004607 ORTHO05D005836 2.7e-44 182.6 168 59.5
Solyc02g082710.3 Solanum lycopersicum HOM05D004607 ORTHO05D005836 7.9e-44 181.0 162 58.0
Lj4g0003075 Lotus japonicus HOM05D004607 ORTHO05D005836 1.8e-43 179.9 162 58.0
FAN26G2101 Fragaria x ananassa HOM05D004607 ORTHO05D005836 2.3e-43 179.5 201 51.7
Haze_03657 Corylus avellana HOM05D004607 ORTHO05D005836 3.0e-43 179.1 156 60.3
Haze_03663 Corylus avellana HOM05D004607 ORTHO05D005836 3.0e-43 179.1 156 60.3
Gorai.010G212400 Gossypium raimondii HOM05D004607 ORTHO05D005836 3.0e-43 179.1 161 56.5
Medtr8g073600 Medicago truncatula HOM05D004607 ORTHO05D005836 3.0e-43 179.1 166 55.4
Sopen02g027460 Solanum pennellii HOM05D004607 ORTHO05D005836 3.0e-43 179.1 162 58.0
Migut.C01149 Erythranthe guttata HOM05D004607 ORTHO05D005836 3.9e-43 178.7 177 54.2
CAN.G1238.9 Capsicum annuum HOM05D004607 ORTHO05D005836 6.7e-43 177.9 162 57.4
Migut.K01195 Erythranthe guttata HOM05D004607 ORTHO05D005836 6.7e-43 177.9 174 55.2
Haze_04009 Corylus avellana HOM05D004607 ORTHO05D005836 8.8e-43 177.6 156 60.3
Lalb_Chr05g0229661 Lupinus albus HOM05D004607 ORTHO05D005836 8.8e-43 177.6 162 56.8
Cc07_g11810 Coffea canephora HOM05D004607 ORTHO05D005836 1.1e-42 177.2 171 55.0
Ca_02856_v3 Cicer arietinum L. HOM05D004607 ORTHO05D005836 2.5e-42 176.0 167 53.3
Lalb_Chr09g0324751 Lupinus albus HOM05D004607 ORTHO05D005836 2.5e-42 176.0 174 55.2
Nitab4.5_0000467g0060 Nicotiana tabacum HOM05D004607 ORTHO05D005836 2.5e-42 176.0 164 54.3
Migut.G00971 Erythranthe guttata HOM05D004607 ORTHO05D005836 3.3e-42 175.6 177 53.7
FvH4_1g10370 Fragaria vesca HOM05D004607 ORTHO05D005836 4.3e-42 175.3 181 55.8
Actinidia22900 Actinidia chinensis HOM05D004607 ORTHO05D005836 5.7e-42 174.9 172 54.7
Nitab4.5_0011694g0010 Nicotiana tabacum HOM05D004607 ORTHO05D005836 5.7e-42 174.9 162 58.0
Ciclev10016602m.g Citrus clementina HOM05D004607 ORTHO05D005836 3.7e-41 172.2 156 59.0
ClCG10G000250 Citrullus lanatus HOM05D004607 ORTHO05D005836 6.3e-41 171.4 156 57.7
HanXRQChr16g0531851 Helianthus annuus HOM05D004607 ORTHO05D005836 8.2e-41 171.0 159 56.0
Nn2g14487 Nelumbo nucifera HOM05D004607 ORTHO05D005836 1.4e-40 170.2 170 52.4
Lalb_Chr05g0214781 Lupinus albus HOM05D004607 ORTHO05D005836 1.2e-39 167.2 167 55.1
Sopen02g012590 Solanum pennellii HOM05D004607 ORTHO05D005836 1.5e-39 166.8 164 53.0
Solyc02g038815.1 Solanum lycopersicum HOM05D004607 ORTHO05D005836 2.6e-39 166.0 164 52.4
MSTRG.1461 Avicennia marina HOM05D004607 ORTHO05D005836 4.5e-39 165.2 175 52.0
Phvul.003G269900 Phaseolus vulgaris HOM05D004607 ORTHO05D005836 5.9e-39 164.9 167 53.9
Duzib187G1597 Durio zibethinus HOM05D004607 ORTHO05D005836 7.7e-39 164.5 167 56.3
Sed0016741 Sechium edule HOM05D004607 ORTHO05D005836 1.0e-38 164.1 130 65.4
ECA246G3880 Erigeron canadensis HOM05D004607 ORTHO05D005836 1.7e-38 163.3 166 51.8
MBI11_g22240_MAGBIO Magnolia biondii HOM05D004607 ORTHO05D005836 4.2e-37 158.7 162 51.9
vmacro23502 Vaccinium macrocarpon HOM05D004607 ORTHO05D005836 7.2e-37 157.9 154 55.2
unitig_26.g9912 Utricularia gibba HOM05D004607 ORTHO05D005836 2.1e-36 156.4 172 48.3
arahy.Tifrunner.gnm1.ann1.322DBQ Arachis hypogaea HOM05D004607 ORTHO05D005836 2.7e-36 156.0 168 52.4
arahy.Tifrunner.gnm1.ann1.WAU4HL Arachis hypogaea HOM05D004607 ORTHO05D005836 2.7e-36 156.0 168 52.4
Sabra05G0083700 Salix brachista HOM05D004607 ORTHO05D005836 3.6e-36 155.6 139 62.6
Atru.chr8.743 Acer truncatum HOM05D004607 ORTHO05D005836 4.7e-36 155.2 134 59.7
Glyma.11G085750 Glycine max HOM05D004607 ORTHO05D005836 6.1e-36 154.8 175 50.9
Sc16g0000240 Simmondsia chinensis HOM05D004607 ORTHO05D005836 1.0e-35 154.1 153 54.9
Nitab4.5_0000702g0180 Nicotiana tabacum HOM05D004607 ORTHO05D005836 1.4e-35 153.7 157 54.1
Zm00001eb320900 Zea mays HOM05D004607 ORTHO05D005836 1.8e-35 153.3 166 49.4
HanXRQChr09g0259831 Helianthus annuus HOM05D004607 ORTHO05D005836 2.3e-35 152.9 158 50.6
PSO761G0125 Papaver somniferum HOM05D004607 ORTHO05D005836 3.9e-35 152.1 169 47.9
Psat0s2561g0240 Pisum sativum HOM05D004607 ORTHO05D005836 5.1e-35 151.8 174 51.1
PSO210G1290 Papaver somniferum HOM05D004607 ORTHO05D005836 8.8e-35 151.0 169 47.3
Migut.M00637 Erythranthe guttata HOM05D004607 ORTHO05D005836 1.1e-34 150.6 132 56.8
Os06g0198700 Oryza sativa ssp. japonica HOM05D004607 ORTHO05D005836 1.5e-34 150.2 162 49.4
PGSC0003DMG400001520 Solanum tuberosum HOM05D004607 ORTHO05D005836 2.0e-34 149.8 146 55.5
TAR628G0874 Trochodendron aralioides HOM05D004607 ORTHO05D005836 2.0e-34 149.8 149 53.0
Lj2g0013322 Lotus japonicus HOM05D004607 ORTHO05D005836 2.6e-34 149.4 164 50.0
Glyma.01G158900 Glycine max HOM05D004607 ORTHO05D005836 3.3e-34 149.1 162 51.2
Psat4g104720 Pisum sativum HOM05D004607 ORTHO05D026060 9.7e-34 147.5 157 52.9
TPR.G21990 Trifolium pratense HOM05D004607 ORTHO05D005836 9.7e-34 147.5 176 46.0
Duzib264G0749 Durio zibethinus HOM05D004607 ORTHO05D005836 1.7e-33 146.7 138 58.0
TPR.G33861 Trifolium pratense HOM05D004607 ORTHO05D005836 2.2e-33 146.4 175 50.9
ATR0807G168 Amborella trichopoda HOM05D004607 ORTHO05D005836 1.1e-32 144.1 164 46.3
Phvul.002G116550 Phaseolus vulgaris HOM05D004607 ORTHO05D005836 1.1e-32 144.1 163 47.9
Lsat_1_v5_gn_8_112021 Lactuca sativa HOM05D000005 ORTHO05D000012 1.8e-32 143.3 139 54.0
Aqoxy5G01013 Aquilegia oxysepala HOM05D004607 ORTHO05D005836 4.1e-32 142.1 152 50.0
COL.COLO4_13415 Corchorus olitorius HOM05D004607 ORTHO05D005836 7.0e-32 141.4 133 54.9
SalBow7G0705 Salvia bowleyana HOM05D004607 ORTHO05D005836 7.0e-32 141.4 212 42.0
CDE05G3414 Ceratophyllum demersum HOM05D004607 ORTHO05D005836 1.5e-31 140.2 141 52.5
Migut.N00197 Erythranthe guttata HOM05D004607 ORTHO05D005836 3.5e-31 139.0 156 48.7
CDE05G1839 Ceratophyllum demersum HOM05D001594 ORTHO05D006997 1.7e-30 136.7 191 43.5
SalBow7G2290 Salvia bowleyana HOM05D004607 ORTHO05D005836 5.0e-30 135.2 207 41.5
SGA_v2.0_scaffold52G18984 Striga asiatica HOM05D004607 ORTHO05D005836 1.5e-29 133.7 145 51.0
HPP92_002453 Vanilla planifolia HOM05D004607 ORTHO05D005836 1.5e-29 133.7 169 45.0
Zm00001eb373950 Zea mays HOM05D004607 ORTHO05D005836 1.5e-29 133.7 157 49.0
EL10Ac3g05419 Beta vulgaris HOM05D004607 ORTHO05D005836 7.2e-29 131.3 150 48.0
SalBow7G4137 Salvia bowleyana HOM05D004607 ORTHO05D005836 1.2e-28 130.6 215 40.0
Manes.14G160966 Manihot esculenta HOM05D004607 ORTHO05D005836 6.1e-28 128.3 162 43.2
AUR62031422 Chenopodium quinoa HOM05D004607 ORTHO05D005836 1.0e-27 127.5 149 49.0
MD15G1231800 Malus domestica HOM05D004607 ORTHO05D005836 3.9e-27 125.6 265 34.0
Nitab4.5_0001365g0040 Nicotiana tabacum HOM05D004607 ORTHO05D005836 8.8e-27 124.4 152 46.1
QL06p052929 Quercus lobata HOM05D004607 ORTHO05D005836 1.1e-26 124.0 90 62.2
AUR62021120 Chenopodium quinoa HOM05D004607 ORTHO05D005836 2.0e-26 123.2 158 46.8
unitig_749.g13934 Utricularia gibba HOM05D004607 ORTHO05D005836 2.6e-23 112.8 134 46.3
ECA232G4775 Erigeron canadensis HOM05D004607 ORTHO05D005836 4.5e-23 112.1 124 48.4
Rhsim10G0196300 Rhododendron simsii HOM05D004607 ORTHO05D005836 4.5e-23 112.1 112 54.5
Hund00045 Selenicereus undatus HOM05D004607 ORTHO05D005836 5.9e-23 111.7 163 44.2
CSS0045229 Camellia sinensis var. sinensis HOM05D004607 ORTHO05D005836 1.7e-22 110.2 171 41.5
Peaxi162Scf00580g00027 Petunia axillaris HOM05D004607 ORTHO05D005836 5.0e-22 108.6 174 40.8
TAR376G0723 Trochodendron aralioides HOM05D004607 ORTHO05D005836 4.2e-21 105.5 109 53.2
Duzib147G0723 Durio zibethinus HOM05D004607 ORTHO05D005836 1.4e-19 100.5 85 65.9
MELO3C013722.2 Cucumis melo HOM05D004607 ORTHO05D005836 3.0e-19 99.4 86 62.8
Mapoly0007s0238 Marchantia polymorpha HOM05D004607 ORTHO05D005836 6.8e-19 98.2 170 37.6
SGA_v2.0_scaffold24G10477 Striga asiatica HOM05D004607 ORTHO05D005836 6.8e-19 98.2 172 36.6
PGSC0003DMG400017476 Solanum tuberosum HOM05D004607 ORTHO05D005836 2.6e-18 96.3 76 55.3
QL06p052933 Quercus lobata HOM05D004607 ORTHO05D005836 6.3e-17 91.7 74 70.3
CAN.G328.18 Capsicum annuum HOM05D004607 ORTHO05D005836 8.3e-17 91.3 100 47.0
VMungo1215G0163 Vigna mungo HOM05D004607 ORTHO05D005836 1.8e-16 90.1 117 51.3
FAN23G1441 Fragaria x ananassa HOM05D004607 ORTHO05D005836 3.1e-16 89.4 84 61.9
Gohir.D06G180900 Gossypium hirsutum HOM05D004607 ORTHO05D005836 1.6e-15 87.0 81 58.0
Gohir.A06G172006 Gossypium hirsutum HOM05D004607 ORTHO05D005836 1.3e-14 84.0 81 55.6
Glyma.16G116500 Glycine max HOM05D004607 ORTHO05D005836 2.9e-14 82.8 93 53.8
Pp3c7_8860 Physcomitrium patens HOM05D004607 ORTHO05D005836 3.2e-13 79.3 169 36.1
Rhsim10G0196100 Rhododendron simsii HOM05D004607 ORTHO05D005836 1.2e-12 77.4 111 45.9
AagrBONN_evm.TU.Sc2ySwM_362.230 Anthoceros agrestis HOM05D004607 ORTHO05D005836 3.6e-12 75.9 136 37.5
Cpa.g.sc117.83 Carica papaya HOM05D004607 ORTHO05D005836 1.3e-09 67.4 62 56.5
VMungo0251G1148 Vigna mungo HOM05D004607 ORTHO05D005836 2.0e-07 60.1 82 46.3
FAN19G1486 Fragaria x ananassa HOM05D004607 ORTHO05D005836 2.7e-07 59.7 51 66.7
VMungo0703G0001 Vigna mungo HOM05D004607 ORTHO05D005836 2.7e-07 59.7 91 44.0


User provided reference genes

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