Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp7g14390 Schrenkiella parvula HOM05D004309 ORTHO05D005588 1.5e-124 449.5 224 100.0
Thhalv10026185m.g Eutrema salsugineum HOM05D004309 ORTHO05D005588 2.8e-123 445.3 224 98.7
AL7G39330 Arabidopsis lyrata HOM05D004309 ORTHO05D005588 4.1e-122 441.4 224 97.3
Carub.0007s2572 Capsella rubella HOM05D004309 ORTHO05D005588 5.3e-122 441.0 224 97.8
BolC8t48324H Brassica oleracea HOM05D004309 ORTHO05D005588 3.4e-121 438.3 224 96.4
BcaC07g37940 Brassica carinata HOM05D004309 ORTHO05D005588 5.9e-121 437.6 224 96.4
A08p12070 Brassica napus HOM05D004309 ORTHO05D005588 1.7e-120 436.0 224 95.5
BraA08t33198Z Brassica rapa HOM05D004309 ORTHO05D005588 1.7e-120 436.0 224 95.5
CARHR290520 Cardamine hirsuta HOM05D004309 ORTHO05D005588 1.7e-120 436.0 224 96.9
BcaB04g18344 Brassica carinata HOM05D004309 ORTHO05D005588 2.9e-120 435.3 224 95.5
AT4G15940 Arabidopsis thaliana HOM05D004309 ORTHO05D005588 1.4e-119 433.0 224 96.9
Aa31LG10G6200 Aethionema arabicum HOM05D004309 ORTHO05D005588 2.5e-111 405.6 272 78.7
A08p12080 Brassica napus HOM05D004309 ORTHO05D005588 1.2e-110 403.3 224 89.7
BraA08t33199Z Brassica rapa HOM05D004309 ORTHO05D005588 1.2e-110 403.3 224 89.7
BcaB04g18345 Brassica carinata HOM05D004309 ORTHO05D005588 3.0e-109 398.7 225 89.3
THA.LOC104802581 Tarenaya hassleriana HOM05D004309 ORTHO05D005588 1.5e-108 396.4 224 86.2
Thhalv10021471m.g Eutrema salsugineum HOM05D004309 ORTHO05D005588 2.6e-108 395.6 222 86.9
Sp3g14970 Schrenkiella parvula HOM05D004309 ORTHO05D005588 1.3e-107 393.3 222 86.9
Carub.0003s1643 Capsella rubella HOM05D004309 ORTHO05D005588 1.7e-107 392.9 222 86.9
AL3G29630 Arabidopsis lyrata HOM05D004309 ORTHO05D005588 2.2e-107 392.5 224 87.1
BcaC09g48622 Brassica carinata HOM05D004309 ORTHO05D005588 7.0e-106 387.5 222 85.6
BolC1t04737H Brassica oleracea HOM05D004309 ORTHO05D005588 7.0e-106 387.5 222 85.6
Aa31LG8G3800 Aethionema arabicum HOM05D004309 ORTHO05D005588 1.2e-105 386.7 224 84.8
C01p47650 Brassica napus HOM05D004309 ORTHO05D005588 1.6e-105 386.3 222 85.1
A01p37620 Brassica napus HOM05D004309 ORTHO05D005588 4.5e-105 384.8 222 84.7
Atru.chr4.2894 Acer truncatum HOM05D004309 ORTHO05D005588 7.7e-105 384.0 220 83.2
BraA01t03822Z Brassica rapa HOM05D004309 ORTHO05D005588 3.8e-104 381.7 222 83.8
Sabra10G0006000 Salix brachista HOM05D004309 ORTHO05D005588 6.1e-102 374.4 216 82.9
Thecc.04G288300 Theobroma cacao HOM05D004309 ORTHO05D005588 1.4e-101 373.2 220 81.8
Potri.010G011000 Populus trichocarpa HOM05D004309 ORTHO05D005588 4.0e-101 371.7 216 82.9
GSVIVG01035117001 Vitis vinifera HOM05D004309 ORTHO05D005588 6.8e-101 370.9 222 80.6
Dinv29733 Davidia involucrata HOM05D004309 ORTHO05D005588 2.0e-100 369.4 222 79.3
Manes.03G198200 Manihot esculenta HOM05D004309 ORTHO05D005588 2.6e-100 369.0 220 80.5
CANSAT78G0198 Cannabis sativa HOM05D004309 ORTHO05D005588 3.4e-100 368.6 220 81.4
CSS0011476 Camellia sinensis var. sinensis HOM05D004309 ORTHO05D005588 4.4e-100 368.2 220 80.9
Ciclev10005665m.g Citrus clementina HOM05D004309 ORTHO05D005588 4.4e-100 368.2 255 71.8
Duzib212G0876 Durio zibethinus HOM05D004309 ORTHO05D005588 4.4e-100 368.2 220 80.5
PGR031G0395 Punica granatum HOM05D004309 ORTHO05D005588 7.5e-100 367.5 220 80.0
Aqoxy2G02913 Aquilegia oxysepala HOM05D004309 ORTHO05D005588 1.7e-99 366.3 220 80.5
CiPaw.01G145800 Carya illinoinensis HOM05D004309 ORTHO05D005588 1.7e-99 366.3 220 81.4
Actinidia00004 Actinidia chinensis HOM05D004309 ORTHO05D005588 2.2e-99 365.9 219 79.0
ATR0150G025 Amborella trichopoda HOM05D004309 ORTHO05D005588 8.3e-99 364.0 220 78.2
QL06p010180 Quercus lobata HOM05D004309 ORTHO05D005588 1.1e-98 363.6 223 79.4
CDE11G0079 Ceratophyllum demersum HOM05D004309 ORTHO05D005588 1.8e-98 362.8 215 80.0
Hma1.2p1_0078F.1_g040370 Hydrangea macrophylla HOM05D004309 ORTHO05D005588 1.8e-98 362.8 220 79.1
PSO170G6503 Papaver somniferum HOM05D004309 ORTHO05D005588 1.8e-98 362.8 217 79.7
Sc19g0005430 Simmondsia chinensis HOM05D004309 ORTHO05D005588 2.4e-98 362.5 218 81.2
PSO407G0025 Papaver somniferum HOM05D004309 ORTHO05D005588 5.4e-98 361.3 217 79.3
PSO444G0002 Papaver somniferum HOM05D004309 ORTHO05D005588 5.4e-98 361.3 217 79.3
Gohir.D01G023490 Gossypium hirsutum HOM05D004309 ORTHO05D005588 7.0e-98 360.9 220 79.5
TAR633G1513 Trochodendron aralioides HOM05D004309 ORTHO05D005588 7.0e-98 360.9 220 78.2
CAN.G1639.2 Capsicum annuum HOM05D004309 ORTHO05D005588 1.2e-97 360.1 217 79.3
Gorai.002G028600 Gossypium raimondii HOM05D004309 ORTHO05D005588 1.6e-97 359.8 220 79.1
Prupe.1G125100 Prunus persica HOM05D004309 ORTHO05D005588 2.7e-97 359.0 220 78.6
Gohir.A01G033033 Gossypium hirsutum HOM05D004309 ORTHO05D005588 1.0e-96 357.1 220 78.2
DCAR_023296 Daucus carota HOM05D004309 ORTHO05D005588 1.3e-96 356.7 225 78.2
SGA_v2.0_scaffold91G28010 Striga asiatica HOM05D004309 ORTHO05D005588 1.3e-96 356.7 220 79.1
Eucgr.C01303 Eucalyptus grandis HOM05D004309 ORTHO05D005588 2.2e-96 355.9 224 77.2
Sed0001785 Sechium edule HOM05D004309 ORTHO05D005588 2.2e-96 355.9 221 77.4
Rhsim04G0225000 Rhododendron simsii HOM05D004309 ORTHO05D005588 2.9e-96 355.5 215 80.0
FvH4_4g18580 Fragaria vesca HOM05D004309 ORTHO05D005588 5.0e-96 354.8 214 79.9
HanXRQChr06g0173801 Helianthus annuus HOM05D004309 ORTHO05D005588 5.0e-96 354.8 217 79.3
Psat4g026320 Pisum sativum HOM05D004309 ORTHO05D005588 5.0e-96 354.8 221 75.6
TPR.G3211 Trifolium pratense HOM05D004309 ORTHO05D005588 5.0e-96 354.8 218 78.0
Lalb_Chr07g0182331 Lupinus albus HOM05D004309 ORTHO05D005588 1.5e-95 353.2 221 76.0
Sopen01g028230 Solanum pennellii HOM05D004309 ORTHO05D005588 1.5e-95 353.2 217 77.0
Cfa015422 Carpinus fangiana HOM05D004309 ORTHO05D005588 1.9e-95 352.8 221 79.2
ClCG05G006230 Citrullus lanatus HOM05D004309 ORTHO05D005588 1.9e-95 352.8 221 77.4
Nitab4.5_0000695g0040 Nicotiana tabacum HOM05D004309 ORTHO05D005588 1.9e-95 352.8 216 77.3
Nitab4.5_0006814g0040 Nicotiana tabacum HOM05D004309 ORTHO05D005588 2.5e-95 352.4 216 77.3
vmacro08183 Vaccinium macrocarpon HOM05D004309 ORTHO05D005588 2.5e-95 352.4 216 80.1
Hund24883 Selenicereus undatus HOM05D004309 ORTHO05D005588 3.2e-95 352.1 217 78.3
Lsat_1_v5_gn_3_24101 Lactuca sativa HOM05D004309 ORTHO05D005588 4.2e-95 351.7 219 77.6
Solyc01g066480.3 Solanum lycopersicum HOM05D004309 ORTHO05D005588 4.2e-95 351.7 217 76.5
Lj4g0021722 Lotus japonicus HOM05D004309 ORTHO05D007726 5.5e-95 351.3 221 75.6
Glyma.07G245900 Glycine max HOM05D004309 ORTHO05D005588 7.2e-95 350.9 222 75.7
DCAR_027056 Daucus carota HOM05D004309 ORTHO05D005588 9.4e-95 350.5 220 75.9
Glyma.17G028100 Glycine max HOM05D004309 ORTHO05D005588 9.4e-95 350.5 222 75.7
RcHm_v2.0_Chr4g0423181 Rosa chinensis HOM05D004309 ORTHO05D005588 1.2e-94 350.1 214 78.0
Cc03_g01580 Coffea canephora HOM05D004309 ORTHO05D005588 1.6e-94 349.7 217 76.0
arahy.Tifrunner.gnm1.ann1.9V15EM Arachis hypogaea HOM05D004309 ORTHO05D005588 2.1e-94 349.4 217 77.0
CsaV3_3G014840 Cucumis sativus L. HOM05D004309 ORTHO05D005588 2.7e-94 349.0 221 76.5
ECA246G0235 Erigeron canadensis HOM05D004309 ORTHO05D005588 6.1e-94 347.8 215 78.1
VMungo1215G2421 Vigna mungo HOM05D004309 ORTHO05D005588 8.0e-94 347.4 222 75.2
Phvul.003G106800 Phaseolus vulgaris HOM05D004309 ORTHO05D005588 1.0e-93 347.1 222 75.2
arahy.Tifrunner.gnm1.ann1.YC35GQ Arachis hypogaea HOM05D004309 ORTHO05D007726 1.4e-93 346.7 217 76.5
SalBow5G3240 Salvia bowleyana HOM05D004309 ORTHO05D005588 1.4e-93 346.7 217 75.1
Sed0024380 Sechium edule HOM05D004309 ORTHO05D005588 1.8e-93 346.3 220 75.9
Lj3A823G59 Lonicera japonica HOM05D004309 ORTHO05D005588 6.8e-93 344.4 220 75.9
unitig_749.g13387 Utricularia gibba HOM05D004309 ORTHO05D005588 8.8e-93 344.0 219 74.4
Migut.N00082 Erythranthe guttata HOM05D004309 ORTHO05D005588 1.5e-92 343.2 217 73.7
HPP92_010682 Vanilla planifolia HOM05D004309 ORTHO05D005588 7.5e-92 340.9 217 74.7
Medtr4g120230 Medicago truncatula HOM05D004309 ORTHO05D005588 2.8e-91 339.0 215 76.3
Oeu053993.1 Olea europaea HOM05D004309 ORTHO05D005588 8.3e-91 337.4 264 65.9
MELO3C006680.2 Cucumis melo HOM05D004309 ORTHO05D005588 1.1e-90 337.0 235 71.9
MSTRG.24800 Avicennia marina HOM05D004309 ORTHO05D005588 9.2e-90 334.0 212 74.1
Zm00001eb063500 Zea mays HOM05D004309 ORTHO05D005588 4.5e-89 331.6 226 70.8
EL10Ac3g06636 Beta vulgaris HOM05D004309 ORTHO05D005588 6.6e-88 327.8 206 75.2
Zm00001eb053490 Zea mays HOM05D004309 ORTHO05D005588 1.9e-87 326.2 226 69.0
SEGI_31265 Sequoiadendron giganteum HOM05D004309 ORTHO05D005588 2.5e-87 325.9 213 74.6
TWI09G0267 Tripterygium wilfordii HOM05D004309 ORTHO05D005588 4.3e-87 325.1 220 73.2
Os03g0829000 Oryza sativa ssp. japonica HOM05D004309 ORTHO05D005588 5.6e-87 324.7 220 71.8
Nn3g21534 Nelumbo nucifera HOM05D004309 ORTHO05D005588 4.0e-85 318.5 219 73.1
COL.COLO4_13828 Corchorus olitorius HOM05D005069 ORTHO05D006024 3.4e-84 315.5 185 81.1
Lj6A680G88 Lonicera japonica HOM05D004309 ORTHO05D005588 1.7e-83 313.2 220 69.1
AagrBONN_evm.TU.Sc2ySwM_344.4111 Anthoceros agrestis HOM05D004309 ORTHO05D005588 4.6e-81 305.1 223 66.4
CBR_g26355 Chara braunii HOM05D004309 ORTHO05D005588 1.5e-79 300.1 221 67.0
AUR62025637 Chenopodium quinoa HOM05D004309 ORTHO05D005588 2.5e-79 299.3 215 67.4
AUR62001364 Chenopodium quinoa HOM05D004309 ORTHO05D005588 4.3e-79 298.5 213 68.1
Mapoly0093s0048 Marchantia polymorpha HOM05D004309 ORTHO05D005588 4.3e-79 298.5 219 67.1
EL10Ac7g18188 Beta vulgaris HOM05D004309 ORTHO05D005588 2.3e-77 292.7 218 64.7
Pp3c9_26130 Physcomitrium patens HOM05D004309 ORTHO05D005588 5.2e-77 291.6 222 65.8
Ah.08g217630 Amaranthus hybridus HOM05D004309 ORTHO05D005588 4.4e-76 288.5 220 65.0
HPP92_010660 Vanilla planifolia HOM05D004309 ORTHO05D005588 4.1e-74 282.0 181 74.0
AUR62018079 Chenopodium quinoa HOM05D004309 ORTHO05D005588 2.7e-73 279.3 180 72.8
SMO347G0543 Selaginella moellendorffii HOM05D004309 ORTHO05D005588 7.8e-65 251.1 216 58.8
FAN07G2872 Fragaria x ananassa HOM05D004309 ORTHO05D005588 6.2e-62 241.5 144 79.9
PRCOL_00005024 Prasinoderma coloniale HOM05D004309 ORTHO05D005588 8.4e-59 231.1 231 50.2
Cpa.g.sc50.169 Carica papaya HOM05D004309 ORTHO05D005588 5.4e-58 228.4 131 82.4
Thhalv10026938m.g Eutrema salsugineum HOM05D004309 ORTHO05D005588 7.3e-55 218.0 118 93.2
Peaxi162Scf00065g01425 Petunia axillaris HOM05D004309 ORTHO05D005588 1.5e-52 210.3 130 76.2
FAN12G2807 Fragaria x ananassa HOM05D005069 ORTHO05D006024 5.8e-52 208.4 126 80.2
Eucgr.C01444 Eucalyptus grandis HOM05D004309 ORTHO05D005588 6.4e-51 204.9 126 77.8
FAN12G1798 Fragaria x ananassa HOM05D004309 ORTHO05D005588 4.6e-49 198.7 120 80.0
AT3G16700 Arabidopsis thaliana HOM05D004309 ORTHO05D005588 1.7e-48 196.8 108 88.0
Duzib151G0762 Durio zibethinus HOM05D004309 ORTHO05D005588 1.1e-47 194.1 146 65.1
Sc26g0002580 Simmondsia chinensis HOM05D004309 ORTHO05D005588 1.5e-44 183.7 125 70.4
Ciclev10006277m.g Citrus clementina HOM05D004309 ORTHO05D005588 6.6e-40 168.3 92 83.7
CARHR091950 Cardamine hirsuta HOM05D004309 ORTHO05D005588 5.6e-39 165.2 91 86.8
QL06p010208 Quercus lobata HOM05D004309 ORTHO05D005588 1.3e-38 164.1 129 68.2
Hma1.2p1_0078F.1_g040630 Hydrangea macrophylla HOM05D004309 ORTHO05D005588 1.2e-36 157.5 89 83.1
Haze_27427 Corylus avellana HOM05D004309 ORTHO05D005588 1.2e-33 147.5 204 42.2
Cfa022490 Carpinus fangiana HOM05D004309 ORTHO05D005588 2.7e-33 146.4 164 46.3
Ciclev10006783m.g Citrus clementina HOM05D004309 ORTHO05D005588 9.6e-31 137.9 91 73.6
SEGI_02276 Sequoiadendron giganteum HOM05D004309 ORTHO05D005588 1.1e-29 134.4 189 37.6
SMO353G0001 Selaginella moellendorffii HOM05D004309 ORTHO05D005588 1.4e-29 134.0 214 36.4
Cre12.g549450 Chlamydomonas reinhardtii HOM05D004309 ORTHO05D005588 3.1e-29 132.9 193 43.0
Pp3c6_20080 Physcomitrium patens HOM05D004309 ORTHO05D005588 1.2e-28 131.0 219 35.6
Haze_27486 Corylus avellana HOM05D004309 ORTHO05D005588 7.6e-28 128.3 195 36.9
Os03g0421700 Oryza sativa ssp. japonica HOM05D004309 ORTHO05D005588 1.0e-27 127.9 94 63.8
ATR0326G053 Amborella trichopoda HOM05D004309 ORTHO05D005588 4.9e-27 125.6 77 77.9
BcaC01g03621 Brassica carinata HOM05D004309 ORTHO05D005588 1.1e-26 124.4 93 72.0
MCO13G238 Micromonas commoda HOM05D004309 ORTHO05D005588 3.0e-24 116.3 216 35.2
Pp3s34_290 Physcomitrium patens HOM05D000879 ORTHO05D000265 3.3e-23 112.8 195 36.9
Actinidia27753 Actinidia chinensis HOM05D004309 ORTHO05D005588 4.3e-23 112.5 88 62.5
PRCOL_00000256 Prasinoderma coloniale HOM05D004309 ORTHO05D005588 4.8e-22 109.0 213 34.3
RcHm_v2.0_Chr4g0423191 Rosa chinensis HOM05D004309 ORTHO05D005588 4.8e-22 109.0 71 77.5
AUR62024358 Chenopodium quinoa HOM05D002697 ORTHO05D003087 1.4e-21 107.5 71 70.4
Peaxi162Scf00454g00328 Petunia axillaris HOM05D004309 ORTHO05D005588 4.1e-21 105.9 71 67.6
AagrBONN_evm.TU.Sc2ySwM_368.471 Anthoceros agrestis HOM05D004309 ORTHO05D005588 6.9e-21 105.1 172 34.9
BolC3t17332H Brassica oleracea HOM05D004309 ORTHO05D005588 5.9e-20 102.1 92 63.0
C03p50400 Brassica napus HOM05D004309 ORTHO05D005588 7.6e-20 101.7 92 62.0
Lsat_1_v5_gn_3_26221 Lactuca sativa HOM05D004309 ORTHO05D005588 8.5e-19 98.2 98 54.1
Prupe.1G124800 Prunus persica HOM05D004309 ORTHO05D005588 5.5e-18 95.5 60 75.0
Zm00001eb065520 Zea mays HOM05D002744 ORTHO05D008989 2.7e-17 93.2 70 64.3
MD04G1020300 Malus domestica HOM05D004309 ORTHO05D005588 7.9e-17 91.7 59 76.3
Peaxi162Scf00267g00046 Petunia axillaris HOM05D004309 ORTHO05D005588 2.3e-16 90.1 56 75.0
Zm00001eb419610 Zea mays HOM05D004309 ORTHO05D005588 2.5e-15 86.7 68 58.8
GSVIVG01010688001 Vitis vinifera HOM05D004309 ORTHO05D005588 7.4e-15 85.1 57 66.7
Cpa.g.sc50.168 Carica papaya HOM05D004309 ORTHO05D005588 2.2e-14 83.6 46 82.6
Lsat_1_v5_gn_8_151620 Lactuca sativa HOM05D004309 ORTHO05D012139 6.3e-14 82.0 53 75.5
Zm00001eb097870 Zea mays HOM05D004309 ORTHO05D026220 7.7e-12 75.1 68 51.5
Zm00001eb085600 Zea mays HOM05D001297 ORTHO05D001135 1.3e-11 74.3 65 52.3
Zm00001eb194540 Zea mays HOM05D004309 ORTHO05D026220 1.7e-11 73.9 64 53.1
Zm00001eb282740 Zea mays HOM05D004309 ORTHO05D005588 2.2e-11 73.6 66 53.0
Zm00001eb423340 Zea mays HOM05D004309 ORTHO05D026220 5.0e-11 72.4 59 55.9
Zm00001eb024340 Zea mays HOM05D004309 ORTHO05D026220 1.4e-08 64.3 57 52.6
Zm00001eb170420 Zea mays HOM05D004309 ORTHO05D026220 3.0e-08 63.2 48 62.5
RcHm_v2.0_Chr0c32g0501491 Rosa chinensis HOM05D004309 ORTHO05D005588 6.7e-08 62.0 39 69.2


User provided reference genes

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