Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp7g14160 Schrenkiella parvula HOM05D006719 ORTHO05D007063 1.4e-41 173.3 155 100.0
Carub.0007s2587 Capsella rubella HOM05D006719 ORTHO05D007063 1.8e-28 129.8 155 83.2
Thhalv10026485m.g Eutrema salsugineum HOM05D006719 ORTHO05D007063 3.1e-28 129.0 155 85.2
BraA08t33189Z Brassica rapa HOM05D006719 ORTHO05D007063 6.7e-23 111.3 156 74.4
AL7G39510 Arabidopsis lyrata HOM05D006719 ORTHO05D007063 6.2e-21 104.8 155 82.6
AT4G15790 Arabidopsis thaliana HOM05D006719 ORTHO05D007063 1.2e-19 100.5 155 80.6
BraA01t02080Z Brassica rapa HOM05D020768 ORTHO05D007063 2.0e-19 99.8 188 59.0
Aa31LG10G6320 Aethionema arabicum HOM05D006719 ORTHO05D007063 8.4e-18 94.4 155 77.4
BcaC07g37932 Brassica carinata HOM05D006719 ORTHO05D007063 1.0e-15 87.4 129 51.2
BolC8t48317H Brassica oleracea HOM05D006719 ORTHO05D007063 1.0e-15 87.4 129 51.2
CARHR290290 Cardamine hirsuta HOM05D006719 ORTHO05D007063 1.0e-15 87.4 129 82.2
A08p11980 Brassica napus HOM05D006719 ORTHO05D007063 8.7e-15 84.3 63 81.0
A01p21710 Brassica napus HOM05D020768 ORTHO05D007063 4.8e-13 78.6 155 72.9
THA.LOC104820261 Tarenaya hassleriana HOM05D006719 ORTHO05D007063 9.0e-12 74.3 155 69.0
BolC1t02654H Brassica oleracea HOM05D020768 ORTHO05D007063 1.2e-11 73.9 154 70.8
BcaC09g50272 Brassica carinata HOM05D020768 ORTHO05D007063 2.0e-11 73.2 154 70.8
C01p27070 Brassica napus HOM05D020768 ORTHO05D007063 2.0e-11 73.2 154 70.8
THA.LOC104821772 Tarenaya hassleriana HOM05D006719 ORTHO05D007063 3.2e-09 65.9 155 55.5
Atru.chr4.2828 Acer truncatum HOM05D006719 ORTHO05D007063 7.2e-09 64.7 151 67.5
BcaNung00245 Brassica carinata HOM05D020768 ORTHO05D007063 7.2e-09 64.7 155 69.0
Ciclev10006148m.g Citrus clementina HOM05D006719 ORTHO05D007063 9.4e-09 64.3 156 59.6
COL.COLO4_13881 Corchorus olitorius HOM05D006719 ORTHO05D007063 1.6e-08 63.5 148 64.2
Thecc.04G284000 Theobroma cacao HOM05D006719 ORTHO05D007063 1.6e-08 63.5 149 63.1
Dinv44385 Davidia involucrata HOM05D006719 ORTHO05D007063 2.1e-08 63.2 151 60.9
ECA233G1326 Erigeron canadensis HOM05D006719 ORTHO05D007063 2.1e-08 63.2 114 68.4
Hma1.2p1_2670F.1_g326650 Hydrangea macrophylla HOM05D006719 ORTHO05D007063 2.1e-08 63.2 146 62.3
MD16G1170500 Malus domestica HOM05D006719 ORTHO05D007063 2.7e-08 62.8 153 62.7
Duzib151G0940 Durio zibethinus HOM05D006719 ORTHO05D007063 3.6e-08 62.4 151 57.6
HanXRQChr08g0227651 Helianthus annuus HOM05D006719 ORTHO05D007063 4.6e-08 62.0 122 69.7
Potri.008G207500 Populus trichocarpa HOM05D006719 ORTHO05D007063 6.1e-08 61.6 125 59.2
Manes.03G194500 Manihot esculenta HOM05D006719 ORTHO05D007063 7.9e-08 61.2 150 60.0
Manes.15G012900 Manihot esculenta HOM05D006719 ORTHO05D007063 7.9e-08 61.2 147 63.9
Gorai.006G263400 Gossypium raimondii HOM05D006719 ORTHO05D007063 1.0e-07 60.8 153 56.2
vmacro08144 Vaccinium macrocarpon HOM05D006719 ORTHO05D007063 1.0e-07 60.8 132 64.4
vmacro22972 Vaccinium macrocarpon HOM05D006719 ORTHO05D007063 1.0e-07 60.8 132 64.4
CSS0008404 Camellia sinensis var. sinensis HOM05D006719 ORTHO05D007063 3.0e-07 59.3 150 54.0
CSS0019267 Camellia sinensis var. sinensis HOM05D006719 ORTHO05D007063 3.0e-07 59.3 150 54.0
QL06p008791 Quercus lobata HOM05D006719 ORTHO05D007063 3.0e-07 59.3 136 70.6
Cfa015380 Carpinus fangiana HOM05D006719 ORTHO05D007063 3.9e-07 58.9 146 35.6
Duzib212G0625 Durio zibethinus HOM05D006719 ORTHO05D007063 3.9e-07 58.9 147 57.8
MD13G1169300 Malus domestica HOM05D006719 ORTHO05D007063 3.9e-07 58.9 133 60.2
Potri.010G024600 Populus trichocarpa HOM05D006719 ORTHO05D007063 3.9e-07 58.9 146 56.2
CiPaw.02G083300 Carya illinoinensis HOM05D006719 ORTHO05D007063 5.1e-07 58.5 133 66.9
Gohir.A10G163700 Gossypium hirsutum HOM05D006719 ORTHO05D007063 5.1e-07 58.5 150 61.3
Gohir.D09G240400 Gossypium hirsutum HOM05D006719 ORTHO05D007063 8.8e-07 57.8 57 61.4
CiPaw.01G149100 Carya illinoinensis HOM05D006719 ORTHO05D007063 1.1e-06 57.4 57 57.9
Actinidia40259 Actinidia chinensis HOM05D006719 ORTHO05D007063 1.5e-06 57.0 150 62.0
Gohir.A09G239500 Gossypium hirsutum HOM05D006719 ORTHO05D007063 1.5e-06 57.0 57 61.4
Gohir.D10G170100 Gossypium hirsutum HOM05D006719 ORTHO05D007063 2.5e-06 56.2 150 60.7
Gorai.011G189600 Gossypium raimondii HOM05D006719 ORTHO05D007063 2.5e-06 56.2 150 60.7
Nn4g25876 Nelumbo nucifera HOM05D006719 ORTHO05D007063 2.5e-06 56.2 150 53.3
Cpa.g.sc16.165 Carica papaya HOM05D006719 ORTHO05D007063 3.3e-06 55.8 152 63.8
Dinv29768 Davidia involucrata HOM05D001303 ORTHO05D001129 3.3e-06 55.8 129 60.5
PSO170G6252 Papaver somniferum HOM05D006719 ORTHO05D007063 3.3e-06 55.8 147 63.9
PSO210G7501 Papaver somniferum HOM05D006719 ORTHO05D007063 3.3e-06 55.8 147 66.7
Duzib052G0445 Durio zibethinus HOM05D006719 ORTHO05D007063 7.4e-06 54.7 152 61.8
Prupe.1G137900 Prunus persica HOM05D006719 ORTHO05D007063 7.4e-06 54.7 145 57.9
Sopen01g028510 Solanum pennellii HOM05D006719 ORTHO05D007063 7.4e-06 54.7 149 62.4
SGA_v2.0_scaffold147G36286 Striga asiatica HOM05D006719 ORTHO05D007063 7.4e-06 54.7 59 54.2
Aqoxy2G03000 Aquilegia oxysepala HOM05D000520 ORTHO05D000399 9.7e-06 54.3 45 62.2
CANSAT78G1100 Cannabis sativa HOM05D006719 ORTHO05D007063 9.7e-06 54.3 55 60.0


User provided reference genes

Program Settings