Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp7g13890 Schrenkiella parvula HOM05D005247 ORTHO05D006571 2.7e-222 775.0 395 100.0
Thhalv10025397m.g Eutrema salsugineum HOM05D005247 ORTHO05D006571 3.3e-191 671.8 396 87.9
Carub.0007s2616 Capsella rubella HOM05D005247 ORTHO05D006571 1.4e-186 656.4 395 84.8
AT4G15640 Arabidopsis thaliana HOM05D005247 ORTHO05D006571 2.4e-186 655.6 395 85.3
CARHR290040 Cardamine hirsuta HOM05D005247 ORTHO05D006571 3.0e-184 648.7 395 84.8
Sp3g19500 Schrenkiella parvula HOM05D005247 ORTHO05D006571 4.6e-169 598.2 395 77.0
AL7G39790 Arabidopsis lyrata HOM05D005247 ORTHO05D006571 1.3e-168 596.7 330 90.3
THA.LOC104802559 Tarenaya hassleriana HOM05D005247 ORTHO05D006571 2.5e-167 592.4 395 75.9
Aa31LG9G1800 Aethionema arabicum HOM05D005247 ORTHO05D006571 1.2e-166 590.1 395 76.5
BcaC05g28162 Brassica carinata HOM05D005247 ORTHO05D006571 2.6e-164 582.4 395 77.0
C05p41980 Brassica napus HOM05D005247 ORTHO05D006571 2.6e-164 582.4 395 77.0
BolC5t32932H Brassica oleracea HOM05D005247 ORTHO05D006571 7.1e-162 574.3 405 75.3
A05p27200 Brassica napus HOM05D005247 ORTHO05D006571 2.3e-160 569.3 395 75.7
BraA05t21609Z Brassica rapa HOM05D005247 ORTHO05D006571 3.3e-159 565.5 400 75.0
BcaB06g26247 Brassica carinata HOM05D005247 ORTHO05D006571 4.3e-159 565.1 395 74.4
AT3G21465 Arabidopsis thaliana HOM05D005247 ORTHO05D006571 5.3e-157 558.1 396 73.0
AL3G35540 Arabidopsis lyrata HOM05D005247 ORTHO05D006571 6.4e-155 551.2 394 72.8
Carub.0003s2149 Capsella rubella HOM05D005247 ORTHO05D006571 1.4e-154 550.1 402 71.1
BolC8t48291H Brassica oleracea HOM05D005247 ORTHO05D006571 9.3e-138 494.2 456 64.3
BcaB04g18303 Brassica carinata HOM05D005247 ORTHO05D006571 1.2e-137 493.8 297 85.2
Thhalv10021000m.g Eutrema salsugineum HOM05D005247 ORTHO05D006571 6.5e-131 471.5 400 63.0
QL06p007567 Quercus lobata HOM05D005247 ORTHO05D006571 5.7e-127 458.4 401 58.4
Prupe.1G141100 Prunus persica HOM05D005247 ORTHO05D006571 2.9e-123 446.0 400 57.5
Atru.chr4.2766 Acer truncatum HOM05D005247 ORTHO05D006571 2.7e-121 439.5 404 56.4
MD13G1173000 Malus domestica HOM05D005247 ORTHO05D006571 7.9e-121 438.0 402 56.5
CiPaw.02G086000 Carya illinoinensis HOM05D005247 ORTHO05D006571 6.7e-120 434.9 401 55.9
CSS0036429 Camellia sinensis var. sinensis HOM05D005247 ORTHO05D006571 1.5e-119 433.7 404 55.4
Duzib151G0039 Durio zibethinus HOM05D005247 ORTHO05D006571 1.5e-119 433.7 393 57.3
MD16G1174400 Malus domestica HOM05D005247 ORTHO05D006571 2.6e-119 433.0 401 55.9
Gohir.A09G233900 Gossypium hirsutum HOM05D005247 ORTHO05D006571 3.3e-119 432.6 394 57.6
Hma1.2p1_0078F.1_g040780 Hydrangea macrophylla HOM05D005247 ORTHO05D006571 9.7e-119 431.0 399 55.1
Gorai.006G257600 Gossypium raimondii HOM05D005247 ORTHO05D006571 3.7e-118 429.1 394 57.9
Thecc.04G278500 Theobroma cacao HOM05D005247 ORTHO05D006571 8.2e-118 427.9 391 56.8
PGR142G1936 Punica granatum HOM05D005247 ORTHO05D006571 1.1e-117 427.6 326 61.7
Psat5g125320 Pisum sativum HOM05D005247 ORTHO05D006571 1.4e-117 427.2 392 54.6
Ciclev10005079m.g Citrus clementina HOM05D005247 ORTHO05D006571 2.4e-117 426.4 369 59.9
Cfa015350 Carpinus fangiana HOM05D005247 ORTHO05D006571 4.1e-117 425.6 413 54.0
Actinidia23422 Actinidia chinensis HOM05D005247 ORTHO05D006571 5.3e-117 425.2 405 55.1
Cpa.g.sc16.124 Carica papaya HOM05D005247 ORTHO05D006571 5.3e-117 425.2 379 57.5
Lalb_Chr12g0196461 Lupinus albus HOM05D005247 ORTHO05D006571 2.0e-116 423.3 335 60.0
Gohir.D09G234700 Gossypium hirsutum HOM05D005247 ORTHO05D006571 1.7e-115 420.2 394 57.1
TAR362G0112 Trochodendron aralioides HOM05D005247 ORTHO05D006571 1.7e-115 420.2 406 54.9
Lj4g0024405 Lotus japonicus HOM05D005247 ORTHO05D006571 5.0e-115 418.7 392 54.6
RcHm_v2.0_Chr4g0421281 Rosa chinensis HOM05D005247 ORTHO05D006571 6.5e-115 418.3 397 57.2
Phvul.003G101400 Phaseolus vulgaris HOM05D005247 ORTHO05D006571 1.1e-114 417.5 392 54.1
Glyma.17G023300 Glycine max HOM05D005247 ORTHO05D006571 1.4e-114 417.2 323 61.9
Nn7g38324 Nelumbo nucifera HOM05D005247 ORTHO05D006571 1.4e-114 417.2 404 54.0
Medtr3g069790 Medicago truncatula HOM05D005247 ORTHO05D006571 1.6e-113 413.7 388 53.4
TPR.G28788 Trifolium pratense HOM05D005247 ORTHO05D006571 3.6e-113 412.5 334 58.7
CANSAT78G0941 Cannabis sativa HOM05D005247 ORTHO05D006571 4.7e-113 412.1 392 55.9
TWI09G0062 Tripterygium wilfordii HOM05D005247 ORTHO05D006571 4.7e-113 412.1 395 53.4
VMungo1215G2055 Vigna mungo HOM05D005247 ORTHO05D006571 6.1e-113 411.8 392 54.1
Eucgr.H03774 Eucalyptus grandis HOM05D005247 ORTHO05D006571 8.0e-113 411.4 393 53.7
TPR.G29803 Trifolium pratense HOM05D005247 ORTHO05D006571 1.8e-112 410.2 383 54.3
Glyma.07G251000 Glycine max HOM05D005247 ORTHO05D006571 6.7e-112 408.3 347 58.2
Rhsim04G0216900 Rhododendron simsii HOM05D005247 ORTHO05D006571 6.7e-112 408.3 327 59.3
Ca_21545_v3 Cicer arietinum L. HOM05D005247 ORTHO05D006571 2.6e-111 406.4 395 52.2
Potri.008G205300 Populus trichocarpa HOM05D005247 ORTHO05D006571 9.7e-111 404.4 396 54.0
Cc03_g02260 Coffea canephora HOM05D005247 ORTHO05D006571 2.2e-110 403.3 407 53.3
Sc13g0003580 Simmondsia chinensis HOM05D005247 ORTHO05D006571 6.3e-110 401.7 369 54.2
FAN07G0437 Fragaria x ananassa HOM05D005247 ORTHO05D006571 1.1e-109 401.0 391 54.5
Aqoxy5G00647 Aquilegia oxysepala HOM05D005247 ORTHO05D006571 1.8e-109 400.2 406 51.2
FvH4_4g17340 Fragaria vesca HOM05D005247 ORTHO05D006571 4.1e-109 399.1 391 54.7
DCAR_024549 Daucus carota HOM05D005247 ORTHO05D006571 2.6e-108 396.4 304 63.5
Manes.15G016200 Manihot esculenta HOM05D005247 ORTHO05D006571 2.6e-108 396.4 315 59.7
FAN17G1560 Fragaria x ananassa HOM05D005247 ORTHO05D006571 1.0e-107 394.4 399 53.4
MSTRG.21809 Avicennia marina HOM05D005247 ORTHO05D006571 2.2e-107 393.3 392 51.8
GSVIVG01017794001 Vitis vinifera HOM05D005247 ORTHO05D006571 5.0e-107 392.1 325 60.6
Ah.13g074520 Amaranthus hybridus HOM05D005247 ORTHO05D006571 4.2e-106 389.0 392 51.8
Haze_01257 Corylus avellana HOM05D005247 ORTHO05D006571 1.2e-105 387.5 462 47.4
vmacro08197 Vaccinium macrocarpon HOM05D005247 ORTHO05D006571 4.7e-105 385.6 346 53.5
AUR62040732 Chenopodium quinoa HOM05D005247 ORTHO05D006571 1.0e-104 384.4 302 58.9
FAN12G4219 Fragaria x ananassa HOM05D005247 ORTHO05D006571 1.4e-104 384.0 417 51.6
EL10Ac3g06569 Beta vulgaris HOM05D005247 ORTHO05D006571 2.3e-104 383.3 304 59.2
ClCG05G005860 Citrullus lanatus HOM05D005247 ORTHO05D006571 1.2e-103 380.9 384 52.9
Lsat_1_v5_gn_4_34220 Lactuca sativa HOM05D005247 ORTHO05D006571 1.2e-103 380.9 321 56.4
Solyc07g041930.3 Solanum lycopersicum HOM05D005247 ORTHO05D006571 1.2e-103 380.9 401 48.6
CsaV3_3G014210 Cucumis sativus L. HOM05D005247 ORTHO05D006571 2.6e-103 379.8 384 52.6
ECA234G2791 Erigeron canadensis HOM05D005247 ORTHO05D006571 3.3e-103 379.4 327 55.7
Sopen07g021430 Solanum pennellii HOM05D005247 ORTHO05D006571 9.7e-103 377.9 394 49.5
AUR62043783 Chenopodium quinoa HOM05D005247 ORTHO05D006571 2.2e-102 376.7 304 56.9
PSO541G1846 Papaver somniferum HOM05D005247 ORTHO05D006571 6.3e-102 375.2 401 49.1
arahy.Tifrunner.gnm1.ann1.8Y06GW Arachis hypogaea HOM05D005247 ORTHO05D006571 1.4e-101 374.0 387 49.9
HanXRQChr17g0562111 Helianthus annuus HOM05D005247 ORTHO05D006571 2.4e-101 373.2 317 57.4
Sed0017520 Sechium edule HOM05D005247 ORTHO05D006571 5.9e-100 368.6 382 51.8
PSO675G0879 Papaver somniferum HOM05D005247 ORTHO05D006571 1.7e-99 367.1 400 48.2
CAN.G311.32 Capsicum annuum HOM05D005247 ORTHO05D006571 5.0e-99 365.5 315 54.0
arahy.Tifrunner.gnm1.ann1.A4UT9N Arachis hypogaea HOM05D005247 ORTHO05D006571 8.5e-99 364.8 387 49.4
TAR633G1275 Trochodendron aralioides HOM05D005247 ORTHO05D006571 8.5e-99 364.8 323 57.0
Nitab4.5_0001357g0080 Nicotiana tabacum HOM05D005247 ORTHO05D006571 2.5e-98 363.2 415 45.8
Peaxi162Scf00127g00146 Petunia axillaris HOM05D005247 ORTHO05D006571 3.2e-98 362.8 307 54.4
Nitab4.5_0006478g0050 Nicotiana tabacum HOM05D005247 ORTHO05D006571 4.2e-98 362.5 371 48.8
SGA_v2.0_scaffold89G27537 Striga asiatica HOM05D005247 ORTHO05D006571 2.1e-97 360.1 408 47.5
Nitab4.5_0009436g0020 Nicotiana tabacum HOM05D005247 ORTHO05D006571 1.8e-96 357.1 366 48.4
Migut.N00115 Erythranthe guttata HOM05D005247 ORTHO05D006571 4.0e-96 355.9 334 52.7
Dinv38319 Davidia involucrata HOM05D005247 ORTHO05D006571 4.4e-95 352.4 331 55.9
Nitab4.5_0000343g0170 Nicotiana tabacum HOM05D005247 ORTHO05D006571 1.7e-94 350.5 368 47.6
FAN12G3211 Fragaria x ananassa HOM05D005247 ORTHO05D006571 2.0e-92 343.6 342 51.8
ATR0706G238 Amborella trichopoda HOM05D005247 ORTHO05D006571 6.6e-91 338.6 391 46.0
SGA_v2.0_scaffold175G39318 Striga asiatica HOM05D005247 ORTHO05D006571 1.9e-90 337.0 397 45.8
Zm00001eb330100 Zea mays HOM05D005247 ORTHO05D006571 9.5e-90 334.7 314 50.6
unitig_748.g7195 Utricularia gibba HOM05D005247 ORTHO05D006571 8.0e-89 331.6 316 50.6
Os07g0668200 Oryza sativa ssp. japonica HOM05D005247 ORTHO05D006571 1.0e-88 331.3 314 49.4
Dinv44420 Davidia involucrata HOM05D005247 ORTHO05D006571 1.8e-85 320.5 231 63.2
MELO3C006614.2 Cucumis melo HOM05D005247 ORTHO05D006571 7.3e-82 308.5 301 54.8
Hma1.2p1_3003F.1_g331535 Hydrangea macrophylla HOM05D005247 ORTHO05D006571 6.4e-78 295.4 413 41.9
Atru.chr4.2761 Acer truncatum HOM05D005247 ORTHO05D006571 1.6e-76 290.8 280 54.6
vmacro08194 Vaccinium macrocarpon HOM05D005247 ORTHO05D006571 6.0e-76 288.9 275 53.8
Eucgr.H03753 Eucalyptus grandis HOM05D005247 ORTHO05D006571 4.7e-73 279.3 229 59.4
COL.COLO4_13921 Corchorus olitorius HOM05D005247 ORTHO05D006571 2.6e-71 273.5 357 43.4
Hund20585 Selenicereus undatus HOM05D005247 ORTHO05D006571 2.6e-71 273.5 203 63.5
Sabra08G0156600 Salix brachista HOM05D005247 ORTHO05D006571 2.9e-70 270.0 274 53.3
Psat4g226360 Pisum sativum HOM05D005247 ORTHO05D006571 2.8e-65 253.4 338 42.6
BraA08t33173Z Brassica rapa HOM05D005247 ORTHO05D006571 7.3e-58 228.8 123 89.4
Lj6A670T87 Lonicera japonica HOM05D005247 ORTHO05D006571 4.7e-57 226.1 351 40.5
SHI00299 Sapria himalayana HOM05D005247 ORTHO05D000987 6.2e-49 199.1 265 40.8
RcHm_v2.0_Chr4g0421901 Rosa chinensis HOM05D005247 ORTHO05D006571 2.0e-47 194.1 187 52.9
BcaC07g37894 Brassica carinata HOM05D005247 ORTHO05D006571 1.1e-45 188.3 221 57.9
Eucgr.C02045 Eucalyptus grandis HOM05D005247 ORTHO05D006571 7.6e-39 165.6 132 60.6
Mapoly0002s0143 Marchantia polymorpha HOM05D005247 ORTHO05D006571 2.9e-38 163.7 338 29.9
Pp3c14_15200 Physcomitrium patens HOM05D005247 ORTHO05D006571 3.8e-38 163.3 352 31.2
HPP92_013697 Vanilla planifolia HOM05D005247 ORTHO05D006571 6.0e-36 156.0 181 42.0
Psat5g177080 Pisum sativum HOM05D005247 ORTHO05D006571 8.1e-33 145.6 202 41.1
Sabra08G0156700 Salix brachista HOM05D005247 ORTHO05D006571 1.4e-32 144.8 123 57.7
SEGI_33954 Sequoiadendron giganteum HOM05D005247 ORTHO05D000001 1.5e-26 124.8 141 44.7
AagrBONN_evm.TU.Sc2ySwM_228.2885 Anthoceros agrestis HOM05D005247 ORTHO05D006571 2.5e-26 124.0 221 35.3
Psat6g103040 Pisum sativum HOM05D005247 ORTHO05D006571 2.9e-22 110.5 77 63.6
SMO202G0041 Selaginella moellendorffii HOM05D005247 ORTHO05D006571 1.2e-20 105.1 251 26.7
CBR_g30222 Chara braunii HOM05D005247 ORTHO05D006571 2.7e-20 104.0 351 23.9
RcHm_v2.0_Chr4g0421891 Rosa chinensis HOM05D005247 ORTHO05D006571 4.6e-20 103.2 110 50.9
Eucgr.F02603 Eucalyptus grandis HOM05D005247 ORTHO05D006571 6.1e-20 102.8 68 64.7
Eucgr.H03759 Eucalyptus grandis HOM05D005247 ORTHO05D006571 4.8e-17 93.2 87 50.6
Actinidia40231 Actinidia chinensis HOM05D005247 ORTHO05D006571 5.9e-15 86.3 91 46.2
CAN.G640.20 Capsicum annuum HOM05D005247 ORTHO05D006571 1.4e-13 81.6 114 36.0
Pp3c14_7470 Physcomitrium patens HOM05D005247 ORTHO05D006571 7.4e-10 69.3 314 22.0
CAN.G640.21 Capsicum annuum HOM05D005247 ORTHO05D006571 3.1e-08 63.9 147 33.3
FAN22G1325 Fragaria x ananassa HOM05D005247 ORTHO05D006571 3.4e-07 60.5 70 44.3
Eucgr.H03758 Eucalyptus grandis HOM05D005247 ORTHO05D006571 7.7e-07 59.3 38 63.2


User provided reference genes

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