Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp7g13860 Schrenkiella parvula HOM05D006775 ORTHO05D008344 3.0e-148 528.5 264 100.0
A01p21970 Brassica napus HOM05D006775 ORTHO05D008344 1.0e-116 423.7 246 85.8
BraA01t02103Z Brassica rapa HOM05D006775 ORTHO05D008344 1.0e-116 423.7 246 85.8
C01p27330 Brassica napus HOM05D006775 ORTHO05D008344 1.5e-115 419.9 246 85.4
BcaC09g50254 Brassica carinata HOM05D001154 ORTHO05D001175 4.3e-115 418.3 245 85.3
BolC1t02676H Brassica oleracea HOM05D006775 ORTHO05D008344 5.7e-115 417.9 246 85.0
BcaNung00261 Brassica carinata HOM05D006775 ORTHO05D008344 1.3e-114 416.8 247 84.6
CARHR289990 Cardamine hirsuta HOM05D006775 ORTHO05D008344 2.4e-113 412.5 246 82.9
Carub.0007s2625 Capsella rubella HOM05D006775 ORTHO05D008344 3.4e-112 408.7 269 78.1
Aa31LG9G1860 Aethionema arabicum HOM05D006775 ORTHO05D008344 1.6e-96 356.7 247 72.9
THA.LOC104820238 Tarenaya hassleriana HOM05D006775 ORTHO05D008344 6.6e-79 298.1 246 64.6
Thhalv10026419m.g Eutrema salsugineum HOM05D006775 ORTHO05D008344 4.1e-73 278.9 168 84.5
AL7G39920 Arabidopsis lyrata HOM05D006775 ORTHO05D008344 1.6e-72 276.9 168 86.9
AT4G15563 Arabidopsis thaliana HOM05D006775 ORTHO05D008344 3.3e-70 269.2 168 83.9
Cpa.g.sc1008.3 Carica papaya HOM05D006775 ORTHO05D008344 3.6e-61 239.2 232 54.3
Atru.chr4.2756 Acer truncatum HOM05D006775 ORTHO05D008344 2.3e-60 236.5 228 51.3
Manes.15G016600 Manihot esculenta HOM05D006775 ORTHO05D008344 2.9e-58 229.6 242 51.7
Cc03_g02340 Coffea canephora HOM05D006775 ORTHO05D008344 1.1e-57 227.6 239 48.5
Cfa015346 Carpinus fangiana HOM05D006775 ORTHO05D008344 4.1e-57 225.7 245 50.6
Actinidia40225 Actinidia chinensis HOM05D006775 ORTHO05D008344 2.7e-56 223.0 236 49.2
TWI09G0159 Tripterygium wilfordii HOM05D006775 ORTHO05D008344 3.5e-56 222.6 233 52.4
TWI09G0706 Tripterygium wilfordii HOM05D006775 ORTHO05D008344 3.5e-56 222.6 233 51.5
Eucgr.H03770 Eucalyptus grandis HOM05D006775 ORTHO05D008344 4.6e-56 222.2 239 51.9
Potri.008G204800 Populus trichocarpa HOM05D006775 ORTHO05D008344 7.8e-56 221.5 243 48.6
Lj3A812T71 Lonicera japonica HOM05D006775 ORTHO05D008344 1.0e-55 221.1 234 47.9
COL.COLO4_13925 Corchorus olitorius HOM05D006775 ORTHO05D008344 1.7e-55 220.3 234 50.9
Glyma.07G251400 Glycine max HOM05D006775 ORTHO05D008344 3.9e-55 219.2 236 50.0
Nitab4.5_0005595g0020 Nicotiana tabacum HOM05D006775 ORTHO05D008344 1.1e-54 217.6 237 49.8
QL06p007489 Quercus lobata HOM05D006775 ORTHO05D008344 1.1e-54 217.6 238 49.6
Sabra08G0157200 Salix brachista HOM05D006775 ORTHO05D008344 1.1e-54 217.6 243 48.6
MD00G1092600 Malus domestica HOM05D006775 ORTHO05D008344 1.9e-54 216.9 235 50.2
Ciclev10006777m.g Citrus clementina HOM05D000611 ORTHO05D000809 2.5e-54 216.5 228 50.0
SalBow2G3406 Salvia bowleyana HOM05D006775 ORTHO05D008344 2.5e-54 216.5 237 48.5
MSTRG.10056 Avicennia marina HOM05D006775 ORTHO05D008344 3.3e-54 216.1 233 50.2
Phvul.003G101000 Phaseolus vulgaris HOM05D006775 ORTHO05D008344 3.3e-54 216.1 238 48.3
VMungo1215G1959 Vigna mungo HOM05D006775 ORTHO05D008344 3.3e-54 216.1 237 48.5
Sc25g0004760 Simmondsia chinensis HOM05D006775 ORTHO05D008344 4.3e-54 215.7 230 48.7
Thecc.04G277900 Theobroma cacao HOM05D006775 ORTHO05D008344 1.2e-53 214.2 234 49.6
PGR004G1240 Punica granatum HOM05D006775 ORTHO05D008344 2.1e-53 213.4 252 48.4
Lj4g0016853 Lotus japonicus HOM05D006775 ORTHO05D008344 2.8e-53 213.0 238 47.9
PGSC0003DMG400022660 Solanum tuberosum HOM05D006775 ORTHO05D008344 2.8e-53 213.0 247 47.8
CiPaw.02G086400 Carya illinoinensis HOM05D006775 ORTHO05D008344 3.6e-53 212.6 233 48.5
Migut.G00207 Erythranthe guttata HOM05D006775 ORTHO05D008344 3.6e-53 212.6 243 46.5
DCAR_002444 Daucus carota HOM05D006775 ORTHO05D008344 4.7e-53 212.2 248 44.8
Hma1.2p1_0823F.1_g224630 Hydrangea macrophylla HOM05D006775 ORTHO05D008344 4.7e-53 212.2 247 47.8
GSVIVG01017799001 Vitis vinifera HOM05D000611 ORTHO05D000809 4.7e-53 212.2 239 48.1
HanXRQChr03g0079491 Helianthus annuus HOM05D006775 ORTHO05D008344 6.2e-53 211.8 243 46.9
Solyc01g067280.3 Solanum lycopersicum HOM05D006775 ORTHO05D008344 6.2e-53 211.8 247 47.0
SGA_v2.0_scaffold57G20240 Striga asiatica HOM05D006775 ORTHO05D008344 8.1e-53 211.5 233 47.6
Duzib151G0911 Durio zibethinus HOM05D006775 ORTHO05D008344 1.1e-52 211.1 231 48.9
Sopen01g029070 Solanum pennellii HOM05D006775 ORTHO05D008344 6.8e-52 208.4 247 47.0
arahy.Tifrunner.gnm1.ann1.HV9WHL Arachis hypogaea HOM05D006775 ORTHO05D008344 1.2e-51 207.6 243 46.9
Gohir.D10G166800 Gossypium hirsutum HOM05D006775 ORTHO05D008344 2.6e-51 206.5 237 46.4
arahy.Tifrunner.gnm1.ann1.UNR197 Arachis hypogaea HOM05D006775 ORTHO05D008344 5.8e-51 205.3 249 45.8
Nitab4.5_0003256g0010 Nicotiana tabacum HOM05D006775 ORTHO05D008344 9.9e-51 204.5 247 47.4
MBI18_g12413_MAGBIO Magnolia biondii HOM05D006775 ORTHO05D008344 1.3e-50 204.1 244 45.1
Medtr4g118790 Medicago truncatula HOM05D006775 ORTHO05D008344 1.3e-50 204.1 229 48.0
vmacro08201 Vaccinium macrocarpon HOM05D006775 ORTHO05D008344 1.7e-50 203.8 230 47.0
TPR.G14956 Trifolium pratense HOM05D006775 ORTHO05D008344 6.4e-50 201.8 230 47.0
Lsat_1_v5_gn_5_50761 Lactuca sativa HOM05D006775 ORTHO05D008344 8.4e-50 201.4 250 44.4
Glyma.17G022900 Glycine max HOM05D006775 ORTHO05D008344 1.1e-49 201.1 249 44.6
Gorai.011G186100 Gossypium raimondii HOM05D006775 ORTHO05D008344 1.4e-49 200.7 237 46.4
Lalb_Chr13g0303871 Lupinus albus HOM05D006775 ORTHO05D008344 4.1e-49 199.1 235 45.1
ECA240G4404 Erigeron canadensis HOM05D006775 ORTHO05D008344 7.1e-49 198.4 232 47.8
Gohir.A09G233400 Gossypium hirsutum HOM05D006775 ORTHO05D008344 9.2e-49 198.0 232 48.3
Aqoxy5G01958 Aquilegia oxysepala HOM05D006775 ORTHO05D008344 1.2e-48 197.6 241 45.2
Nn3g21322 Nelumbo nucifera HOM05D006775 ORTHO05D008344 1.2e-48 197.6 246 44.7
PSO832G0266 Papaver somniferum HOM05D006775 ORTHO05D008344 1.6e-48 197.2 239 45.6
MELO3C006607.2 Cucumis melo HOM05D006775 ORTHO05D008344 7.8e-48 194.9 226 45.1
Sed0012602 Sechium edule HOM05D006775 ORTHO05D008344 1.0e-47 194.5 228 45.6
CsaV3_3G014150 Cucumis sativus L. HOM05D006775 ORTHO05D008344 1.3e-47 194.1 227 44.9
Psat4g030480 Pisum sativum HOM05D006775 ORTHO05D008344 1.7e-47 193.7 231 43.3
Psat4g030400 Pisum sativum HOM05D006775 ORTHO05D008344 6.6e-47 191.8 230 44.8
TAR633G2345 Trochodendron aralioides HOM05D001386 ORTHO05D003791 8.6e-47 191.4 224 48.7
Gohir.D09G234500 Gossypium hirsutum HOM05D006775 ORTHO05D008344 1.9e-46 190.3 232 47.4
AUR62042989 Chenopodium quinoa HOM05D006775 ORTHO05D008344 2.5e-46 189.9 234 44.0
Peaxi162Scf00386g00010 Petunia axillaris HOM05D006775 ORTHO05D008344 4.3e-46 189.1 247 45.7
ClCG05G005800 Citrullus lanatus HOM05D006775 ORTHO05D008344 5.6e-46 188.7 226 42.9
EL10Ac3g06567 Beta vulgaris HOM05D006775 ORTHO05D008344 1.2e-45 187.6 238 45.8
Nn4g25991 Nelumbo nucifera HOM05D006775 ORTHO05D008344 1.2e-45 187.6 245 44.9
HPP92_025211 Vanilla planifolia HOM05D006775 ORTHO05D008344 1.8e-44 183.7 245 41.6
RcHm_v2.0_Chr6g0302841 Rosa chinensis HOM05D006775 ORTHO05D008344 5.2e-44 182.2 246 43.5
Gorai.006G257400 Gossypium raimondii HOM05D006775 ORTHO05D008344 6.8e-44 181.8 232 45.7
ATR0706G197 Amborella trichopoda HOM05D006775 ORTHO05D008344 1.2e-43 181.0 251 42.6
HPP92_025229 Vanilla planifolia HOM05D006775 ORTHO05D008344 1.2e-43 181.0 246 41.1
Ah.13g074540 Amaranthus hybridus HOM05D006196 ORTHO05D007758 2.4e-41 173.3 229 44.1
Ca_21549_v3 Cicer arietinum L. HOM05D006775 ORTHO05D008344 2.4e-41 173.3 230 42.6
unitig_32.g10786 Utricularia gibba HOM05D006775 ORTHO05D008344 2.4e-41 173.3 218 44.5
CANSAT78G0382 Cannabis sativa HOM05D006775 ORTHO05D008344 3.5e-40 169.5 232 42.2
Zm00001eb285420 Zea mays HOM05D006775 ORTHO05D008344 7.8e-40 168.3 239 39.7
Duzib052G0853 Durio zibethinus HOM05D006775 ORTHO05D008344 1.3e-39 167.5 230 46.1
Gohir.D10G153500 Gossypium hirsutum HOM05D006775 ORTHO05D008344 7.3e-38 161.8 229 42.8
Dinv38323 Davidia involucrata HOM05D006775 ORTHO05D008344 1.3e-37 161.0 165 50.3
TWI09G0165 Tripterygium wilfordii HOM05D006775 ORTHO05D008344 4.8e-37 159.1 186 49.5
Os05g0372800 Oryza sativa ssp. japonica HOM05D006775 ORTHO05D008344 5.3e-36 155.6 235 37.4
Prupe.1G365500 Prunus persica HOM05D006775 ORTHO05D008344 9.9e-35 151.4 166 49.4
FvH4_2g38460 Fragaria vesca HOM05D006775 ORTHO05D008344 4.6e-32 142.5 298 33.2
Haze_01265 Corylus avellana HOM05D006775 ORTHO05D008344 3.0e-31 139.8 165 47.9
FAN20G0357 Fragaria x ananassa HOM05D006775 ORTHO05D008344 8.7e-31 138.3 296 32.4
Oeu062887.1 Olea europaea HOM05D006775 ORTHO05D008344 5.6e-30 135.6 153 50.3
Pp3c2_550 Physcomitrium patens HOM05D006775 ORTHO05D008344 1.6e-29 134.0 258 31.4
Gohir.A10G101330 Gossypium hirsutum HOM05D006775 ORTHO05D008344 4.8e-29 132.5 163 43.6
CDE08G1672 Ceratophyllum demersum HOM05D006775 ORTHO05D008344 6.2e-29 132.1 246 36.2
AagrBONN_evm.TU.Sc2ySwM_362.2565 Anthoceros agrestis HOM05D006775 ORTHO05D008344 2.0e-27 127.1 232 33.2
Rhsim04G0216500 Rhododendron simsii HOM05D006775 ORTHO05D008344 9.9e-27 124.8 233 36.1
HPP92_025275 Vanilla planifolia HOM05D006775 ORTHO05D008344 2.9e-26 123.2 156 41.7
SMO340G0127 Selaginella moellendorffii HOM05D006775 ORTHO05D008344 2.5e-22 110.2 145 42.1
Duzib212G0132 Durio zibethinus HOM05D006775 ORTHO05D008344 3.7e-21 106.3 97 54.6
PSO210G2970 Papaver somniferum HOM05D006775 ORTHO05D008344 1.1e-17 94.7 114 42.1
CSS0028683 Camellia sinensis var. sinensis HOM05D006775 ORTHO05D008344 7.9e-16 88.6 79 51.9
CBR_g21749 Chara braunii HOM05D006775 ORTHO05D008344 1.5e-14 84.3 341 23.2
Haze_01266 Corylus avellana HOM05D006775 ORTHO05D008344 5.7e-14 82.4 69 53.6
Zm00001eb351020 Zea mays HOM05D006775 ORTHO05D008344 1.1e-12 78.2 150 34.7
Gorai.011G171400 Gossypium raimondii HOM05D006775 ORTHO05D008344 4.1e-12 76.3 111 43.2
Eucgr.A01819 Eucalyptus grandis HOM05D006775 ORTHO05D008344 9.0e-12 75.1 87 47.1
Oeu052260.1 Olea europaea HOM05D006775 ORTHO05D008344 1.5e-11 74.3 146 35.6
BcaB05g23239 Brassica carinata HOM05D054959 ORTHO05D008344 2.9e-10 70.1 55 63.6
CSS0032456 Camellia sinensis var. sinensis HOM05D006775 ORTHO05D008344 5.0e-10 69.3 82 46.3
BcaB07g32929 Brassica carinata HOM05D054959 ORTHO05D008344 6.5e-10 68.9 51 64.7
MD09G1114900 Malus domestica HOM05D006775 ORTHO05D008344 6.5e-10 68.9 76 44.7
Rhsim12G0090200 Rhododendron simsii HOM05D006775 ORTHO05D008344 3.0e-07 60.1 67 47.8
Aqoxy5G00644 Aquilegia oxysepala HOM05D006775 ORTHO05D008344 1.5e-06 57.8 71 45.1
Actinidia23427 Actinidia chinensis HOM05D006775 ORTHO05D008344 1.9e-06 57.4 65 47.7


User provided reference genes

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