Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp7g13780 Schrenkiella parvula HOM05D003956 ORTHO05D004850 0.0e+00 1884.4 957 100.0
C07p47210 Brassica napus HOM05D003956 ORTHO05D004850 0.0e+00 1752.6 957 92.3
BolC7t45243H Brassica oleracea HOM05D003956 ORTHO05D004850 0.0e+00 1751.9 957 92.2
Thhalv10024330m.g Eutrema salsugineum HOM05D003956 ORTHO05D004850 0.0e+00 1749.6 957 92.3
BraA03t14011Z Brassica rapa HOM05D003956 ORTHO05D004850 0.0e+00 1742.2 957 91.8
AT4G15530 Arabidopsis thaliana HOM05D003956 ORTHO05D004850 0.0e+00 1740.3 955 91.3
BcaNung00266 Brassica carinata HOM05D003956 ORTHO05D004850 0.0e+00 1740.3 955 91.7
BcaC06g32940 Brassica carinata HOM05D003956 ORTHO05D004850 0.0e+00 1738.8 957 91.8
AL7G39990 Arabidopsis lyrata HOM05D003956 ORTHO05D004850 0.0e+00 1732.2 957 90.7
A01p22040 Brassica napus HOM05D003956 ORTHO05D004850 0.0e+00 1728.8 955 91.2
BraA01t02110Z Brassica rapa HOM05D003956 ORTHO05D004850 0.0e+00 1728.8 955 91.2
C01p27430 Brassica napus HOM05D003956 ORTHO05D004850 0.0e+00 1728.0 952 91.4
A03p49170 Brassica napus HOM05D003956 ORTHO05D004850 0.0e+00 1721.4 943 91.7
BolC1t02682H Brassica oleracea HOM05D003956 ORTHO05D004850 0.0e+00 1718.7 959 90.7
CARHR222330 Cardamine hirsuta HOM05D003956 ORTHO05D004850 0.0e+00 1714.9 959 91.0
Aa31LG9G1910 Aethionema arabicum HOM05D003956 ORTHO05D004850 0.0e+00 1680.6 957 88.4
BcaC09g50248 Brassica carinata HOM05D003956 ORTHO05D004850 0.0e+00 1636.3 871 94.1
Carub.0007s2635 Capsella rubella HOM05D003956 ORTHO05D004850 0.0e+00 1601.3 857 93.2
THA.LOC104820228 Tarenaya hassleriana HOM05D003956 ORTHO05D004850 0.0e+00 1587.4 974 82.1
Manes.03G188300 Manihot esculenta HOM05D003956 ORTHO05D004850 0.0e+00 1536.5 958 80.3
TAR365G1004 Trochodendron aralioides HOM05D003956 ORTHO05D004850 0.0e+00 1533.5 895 83.9
CiPaw.01G156600 Carya illinoinensis HOM05D003956 ORTHO05D004850 0.0e+00 1533.1 970 78.7
Peaxi162Scf00095g00414 Petunia axillaris HOM05D003956 ORTHO05D004850 0.0e+00 1528.8 893 84.3
PGR004G0287 Punica granatum HOM05D003956 ORTHO05D004850 0.0e+00 1526.5 965 79.8
GSVIVG01017850001 Vitis vinifera HOM05D003956 ORTHO05D004850 0.0e+00 1526.1 892 84.4
Atru.chr4.2704 Acer truncatum HOM05D003956 ORTHO05D004850 0.0e+00 1522.3 966 79.4
Rhsim04G0213100 Rhododendron simsii HOM05D003956 ORTHO05D004850 0.0e+00 1522.3 894 84.1
Potri.010G027800 Populus trichocarpa HOM05D003956 ORTHO05D004850 0.0e+00 1521.5 884 85.3
QL06p006231 Quercus lobata HOM05D003956 ORTHO05D004850 0.0e+00 1521.5 978 78.9
Prupe.1G146600 Prunus persica HOM05D003956 ORTHO05D004850 0.0e+00 1520.8 892 83.9
TWI09G0935 Tripterygium wilfordii HOM05D003956 ORTHO05D004850 0.0e+00 1518.8 959 79.1
CANSAT78G1736 Cannabis sativa HOM05D003956 ORTHO05D004850 0.0e+00 1518.1 917 82.1
Haze_01011 Corylus avellana HOM05D003956 ORTHO05D004850 0.0e+00 1515.7 964 80.4
Nitab4.5_0000059g0230 Nicotiana tabacum HOM05D003956 ORTHO05D004850 0.0e+00 1515.4 905 82.9
Cfa015539 Carpinus fangiana HOM05D003956 ORTHO05D004850 0.0e+00 1514.6 965 79.9
Duzib212G0153 Durio zibethinus HOM05D003956 ORTHO05D004850 0.0e+00 1512.7 888 83.9
Sopen01g032260 Solanum pennellii HOM05D003956 ORTHO05D004850 0.0e+00 1509.2 895 83.4
Dinv44455 Davidia involucrata HOM05D003956 ORTHO05D004850 0.0e+00 1508.4 893 83.0
CAN.G889.10 Capsicum annuum HOM05D003956 ORTHO05D004850 0.0e+00 1507.7 895 82.8
Ciclev10006837m.g Citrus clementina HOM05D003956 ORTHO05D004850 0.0e+00 1507.3 919 81.2
Actinidia23451 Actinidia chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1506.5 893 83.5
Gorai.011G181800 Gossypium raimondii HOM05D003956 ORTHO05D004850 0.0e+00 1505.7 889 83.4
Solyc01g080460.3 Solanum lycopersicum HOM05D003956 ORTHO05D004850 0.0e+00 1505.3 890 83.5
Nitab4.5_0010477g0010 Nicotiana tabacum HOM05D003956 ORTHO05D004850 0.0e+00 1505.0 920 81.3
MD16G1179500 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1502.3 963 78.2
Gohir.D10G162900 Gossypium hirsutum HOM05D003956 ORTHO05D004850 0.0e+00 1501.5 889 83.2
CsaV3_3G013930 Cucumis sativus L. HOM05D003956 ORTHO05D004850 0.0e+00 1500.3 941 79.9
Migut.G00282 Erythranthe guttata HOM05D003956 ORTHO05D004850 0.0e+00 1499.6 870 84.3
Lj4g0014830 Lotus japonicus HOM05D003956 ORTHO05D004850 0.0e+00 1498.0 966 77.8
Nn3g21184 Nelumbo nucifera HOM05D003956 ORTHO05D004850 0.0e+00 1497.6 883 83.1
Cc03_g02730 Coffea canephora HOM05D003956 ORTHO05D004850 0.0e+00 1494.6 896 82.3
MD13G1177500 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1493.8 998 75.9
Sabra10G0012900 Salix brachista HOM05D003956 ORTHO05D004850 0.0e+00 1493.8 953 79.5
Eucgr.H03642 Eucalyptus grandis HOM05D003956 ORTHO05D004850 0.0e+00 1491.9 961 77.6
FvH4_4g16670 Fragaria vesca HOM05D003956 ORTHO05D004850 0.0e+00 1491.1 964 77.3
Glyma.07G253700 Glycine max HOM05D003956 ORTHO05D004850 0.0e+00 1491.1 952 78.5
RcHm_v2.0_Chr4g0420131 Rosa chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1489.9 967 77.6
Cpa.g.sc16.74 Carica papaya HOM05D003956 ORTHO05D004850 0.0e+00 1487.6 892 83.1
Actinidia40209 Actinidia chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1486.5 893 82.5
TPR.G28132 Trifolium pratense HOM05D003956 ORTHO05D004850 0.0e+00 1486.5 893 82.4
ECA240G3955 Erigeron canadensis HOM05D003956 ORTHO05D004850 0.0e+00 1485.3 897 81.6
Glyma.17G020600 Glycine max HOM05D003956 ORTHO05D004850 0.0e+00 1484.9 955 78.3
Sed0002405 Sechium edule HOM05D003956 ORTHO05D004850 0.0e+00 1484.9 894 82.2
VMungo1215G0684 Vigna mungo HOM05D003956 ORTHO05D004850 0.0e+00 1484.9 893 82.1
CSS0033563 Camellia sinensis var. sinensis HOM05D003956 ORTHO05D004850 0.0e+00 1484.5 875 83.5
FAN12G0499 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1483.4 974 76.5
FAN12G2270 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1483.4 974 76.5
FAN22G1243 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1483.4 964 77.2
Aqoxy2G03183 Aquilegia oxysepala HOM05D003956 ORTHO05D004850 0.0e+00 1480.7 872 83.3
MD13G1177400 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1479.9 879 83.0
FAN17G1489 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1479.2 976 76.3
Ca_21564_v3 Cicer arietinum L. HOM05D003956 ORTHO05D004850 0.0e+00 1473.4 890 81.9
QL06p005921 Quercus lobata HOM05D003956 ORTHO05D004850 0.0e+00 1473.0 876 82.8
FAN07G1911 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1470.7 974 75.7
Hund20662 Selenicereus undatus HOM05D003956 ORTHO05D004850 0.0e+00 1470.3 890 81.3
MSTRG.10031 Avicennia marina HOM05D003956 ORTHO05D004850 0.0e+00 1467.2 874 82.5
Phvul.003G098200 Phaseolus vulgaris HOM05D003956 ORTHO05D004850 0.0e+00 1466.4 946 77.5
Nn4g26122 Nelumbo nucifera HOM05D003956 ORTHO05D004850 0.0e+00 1464.9 874 82.3
MSTRG.10030 Avicennia marina HOM05D003956 ORTHO05D004850 0.0e+00 1464.5 886 81.4
ATR0626G228 Amborella trichopoda HOM05D003956 ORTHO05D004850 0.0e+00 1464.1 873 82.2
Lsat_1_v5_gn_5_51481 Lactuca sativa HOM05D003956 ORTHO05D004850 0.0e+00 1461.4 872 82.8
SalBow2G1708 Salvia bowleyana HOM05D003956 ORTHO05D004850 0.0e+00 1459.5 874 82.3
Lalb_Chr13g0303991 Lupinus albus HOM05D003956 ORTHO05D004850 0.0e+00 1457.6 893 80.5
SGA_v2.0_scaffold142G35643 Striga asiatica HOM05D003956 ORTHO05D004850 0.0e+00 1456.4 898 80.7
CDE08G0632 Ceratophyllum demersum HOM05D003956 ORTHO05D004850 0.0e+00 1453.7 873 80.8
Duzib151G0049 Durio zibethinus HOM05D003956 ORTHO05D004850 0.0e+00 1448.0 1000 74.0
Sc25g0004550 Simmondsia chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1447.6 858 82.9
PSO302G0065 Papaver somniferum HOM05D003956 ORTHO05D004850 0.0e+00 1446.8 874 80.7
PSO170G3340 Papaver somniferum HOM05D003956 ORTHO05D004850 0.0e+00 1446.0 938 76.8
Lj3C806G12 Lonicera japonica HOM05D003956 ORTHO05D004850 0.0e+00 1445.6 894 80.8
MD16G1179300 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1444.9 855 82.9
PGSC0003DMG400032107 Solanum tuberosum HOM05D003956 ORTHO05D004850 0.0e+00 1443.7 842 84.0
MELO3C006585.2 Cucumis melo HOM05D003956 ORTHO05D004850 0.0e+00 1441.8 844 83.8
Os05g0405000 Oryza sativa ssp. japonica HOM05D003956 ORTHO05D004850 0.0e+00 1439.9 885 79.4
Psat0ss7919g0200 Pisum sativum HOM05D003956 ORTHO05D004850 0.0e+00 1439.9 858 82.2
Thecc.04G272800 Theobroma cacao HOM05D003956 ORTHO05D004850 0.0e+00 1436.0 872 80.5
Zm00001eb349810 Zea mays HOM05D003956 ORTHO05D004850 0.0e+00 1436.0 899 78.4
Thecc.04G272600 Theobroma cacao HOM05D003956 ORTHO05D004850 0.0e+00 1432.2 930 77.4
Duzib151G0209 Durio zibethinus HOM05D003956 ORTHO05D004850 0.0e+00 1429.8 870 80.5
CDE02G0811 Ceratophyllum demersum HOM05D003956 ORTHO05D004850 0.0e+00 1427.5 890 78.8
MD16G1179400 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1424.5 855 82.1
Hma1.2p1_0511F.1_g169230 Hydrangea macrophylla HOM05D003956 ORTHO05D004850 0.0e+00 1424.1 878 81.0
arahy.Tifrunner.gnm1.ann1.EQKV61 Arachis hypogaea HOM05D003956 ORTHO05D004850 0.0e+00 1423.7 922 77.9
arahy.Tifrunner.gnm1.ann1.YQ8C5N Arachis hypogaea HOM05D003956 ORTHO05D004850 0.0e+00 1422.5 851 82.3
Hund19586 Selenicereus undatus HOM05D003956 ORTHO05D004850 0.0e+00 1417.1 844 82.0
DCAR_023283 Daucus carota HOM05D003956 ORTHO05D004850 0.0e+00 1415.2 892 78.9
arahy.Tifrunner.gnm1.ann1.I3NY02 Arachis hypogaea HOM05D003956 ORTHO05D004850 0.0e+00 1403.7 900 77.9
Mapoly0009s0124 Marchantia polymorpha HOM05D003956 ORTHO05D004850 0.0e+00 1391.7 915 75.1
PGR031G3666 Punica granatum HOM05D003956 ORTHO05D004850 0.0e+00 1388.2 862 78.9
AagrBONN_evm.TU.Sc2ySwM_228.3276 Anthoceros agrestis HOM05D003956 ORTHO05D004850 0.0e+00 1384.8 882 76.6
Pp3c5_22540 Physcomitrium patens HOM05D003956 ORTHO05D004850 0.0e+00 1384.4 885 76.5
EL10Ac1g01820 Beta vulgaris HOM05D003956 ORTHO05D004850 0.0e+00 1384.0 889 78.3
Ah.11g043140 Amaranthus hybridus HOM05D003956 ORTHO05D004850 0.0e+00 1382.9 880 79.0
vmacro08238 Vaccinium macrocarpon HOM05D003956 ORTHO05D004850 0.0e+00 1372.5 1006 70.5
ClCG05G005590 Citrullus lanatus HOM05D003956 ORTHO05D004850 0.0e+00 1365.1 930 75.1
BcaC09g50243 Brassica carinata HOM05D003956 ORTHO05D004850 0.0e+00 1360.5 777 88.7
Rhsim02G0016700 Rhododendron simsii HOM05D003956 ORTHO05D004850 0.0e+00 1358.6 882 78.1
Eucgr.B01186 Eucalyptus grandis HOM05D003956 ORTHO05D004850 0.0e+00 1351.7 823 79.8
SMO351G0542 Selaginella moellendorffii HOM05D003956 ORTHO05D004850 0.0e+00 1349.3 870 74.8
unitig_26.g8936 Utricularia gibba HOM05D003956 ORTHO05D004850 0.0e+00 1346.6 873 76.9
Oeu032695.1 Olea europaea HOM05D003956 ORTHO05D004850 0.0e+00 1339.7 774 84.6
Psat4g028880 Pisum sativum HOM05D003956 ORTHO05D004850 0.0e+00 1331.6 807 80.5
Actinidia32373 Actinidia chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1312.0 882 75.1
arahy.Tifrunner.gnm1.ann1.DC6B04 Arachis hypogaea HOM05D003956 ORTHO05D004850 0.0e+00 1310.8 900 73.7
CSS0013368 Camellia sinensis var. sinensis HOM05D003956 ORTHO05D004850 0.0e+00 1310.0 814 80.6
CSS0018237 Camellia sinensis var. sinensis HOM05D003956 ORTHO05D004850 0.0e+00 1273.1 882 74.8
Hma1.2p1_2025F.1_g311530 Hydrangea macrophylla HOM05D003956 ORTHO05D004850 0.0e+00 1243.8 882 73.2
vmacro15287 Vaccinium macrocarpon HOM05D003956 ORTHO05D004850 0.0e+00 1235.3 876 72.8
Gohir.A10G105700 Gossypium hirsutum HOM05D003956 ORTHO05D004850 0.0e+00 1224.9 734 82.2
MCO12G211 Micromonas commoda HOM05D003956 ORTHO05D004850 0.0e+00 1197.2 854 68.9
Zm00001eb287770 Zea mays HOM05D003956 ORTHO05D004850 0.0e+00 1194.9 730 79.9
Cre17.g734548 Chlamydomonas reinhardtii HOM05D003956 ORTHO05D004850 0.0e+00 1177.5 895 66.3
TPR.G28133 Trifolium pratense HOM05D003956 ORTHO05D004850 0.0e+00 1174.5 878 68.3
unitig_749.g14056 Utricularia gibba HOM05D003956 ORTHO05D004850 0.0e+00 1076.2 633 82.6
Cre10.g424750 Chlamydomonas reinhardtii HOM05D003956 ORTHO05D004850 5.3e-304 1047.7 880 60.0
Migut.G00280 Erythranthe guttata HOM05D003956 ORTHO05D004850 1.5e-290 1003.0 581 83.8
MCO01G687 Micromonas commoda HOM05D003956 ORTHO05D004850 2.0e-263 912.9 913 54.8
Medtr4g118350 Medicago truncatula HOM05D003956 ORTHO05D004850 1.7e-262 909.8 568 78.7
AUR62034950 Chenopodium quinoa HOM05D003956 ORTHO05D004850 3.3e-213 746.1 470 79.8
AUR62035455 Chenopodium quinoa HOM05D003956 ORTHO05D004850 9.0e-211 738.0 446 82.7
AUR62035456 Chenopodium quinoa HOM05D003956 ORTHO05D004850 1.9e-208 730.3 505 73.9
AUR62034949 Chenopodium quinoa HOM05D003956 ORTHO05D004850 3.7e-188 662.9 450 74.2
HanXRQChr03g0080571 Helianthus annuus HOM05D003956 ORTHO05D004850 3.7e-188 662.9 417 80.3
CBR_g50184 Chara braunii HOM05D003956 ORTHO05D004850 2.1e-183 647.1 742 49.3
BcaC06g33414 Brassica carinata HOM05D003956 ORTHO05D004850 1.9e-176 624.0 337 92.3
SGA_v2.0_scaffold86G26866 Striga asiatica HOM05D003956 ORTHO05D004850 1.7e-161 574.3 466 64.8
Medtr4g118355 Medicago truncatula HOM05D003956 ORTHO05D004850 2.7e-138 497.3 293 82.6
SGA_v2.0_scaffold86G26865 Striga asiatica HOM05D003956 ORTHO05D004850 3.7e-132 476.9 390 63.3
AUR62034328 Chenopodium quinoa HOM05D003956 ORTHO05D004850 2.2e-108 397.9 422 52.1
arahy.Tifrunner.gnm1.ann1.9WT78J Arachis hypogaea HOM05D003956 ORTHO05D004850 8.4e-100 369.4 318 62.6
HanXRQChr16g0518081 Helianthus annuus HOM05D003956 ORTHO05D004850 4.6e-90 337.0 216 77.8
arahy.Tifrunner.gnm1.ann1.HZTZ4X Arachis hypogaea HOM05D003956 ORTHO05D004850 1.1e-83 315.8 264 63.3
arahy.Tifrunner.gnm1.ann1.7LSJ4G Arachis hypogaea HOM05D003956 ORTHO05D004850 4.2e-67 260.8 227 63.4
arahy.Tifrunner.gnm1.ann1.989M5Y Arachis hypogaea HOM05D003956 ORTHO05D004850 5.9e-61 240.4 216 60.2
unitig_749.g14057 Utricularia gibba HOM05D003956 ORTHO05D004850 1.8e-54 218.8 151 70.2
AagrBONN_evm.TU.Sc2ySwM_362.937 Anthoceros agrestis HOM05D003956 ORTHO05D004850 1.7e-44 185.7 119 73.9
arahy.Tifrunner.gnm1.ann1.S9XVUY Arachis hypogaea HOM05D003956 ORTHO05D004850 9.8e-40 169.9 268 40.3
BcaC09g50244 Brassica carinata HOM05D003956 ORTHO05D004850 1.4e-38 166.0 85 95.3
Pp3c6_6540 Physcomitrium patens HOM05D003956 ORTHO05D004850 1.1e-35 156.4 112 70.5
arahy.Tifrunner.gnm1.ann1.LGH8AH Arachis hypogaea HOM05D003956 ORTHO05D004850 2.3e-28 132.1 83 74.7
GSVIVG01018502001 Vitis vinifera HOM05D003956 ORTHO05D004850 2.3e-28 132.1 81 77.8
Lsat_1_v5_gn_2_81921 Lactuca sativa HOM05D005278 ORTHO05D006500 7.3e-27 127.1 91 67.0
Pp3s196_40 Physcomitrium patens HOM05D003956 ORTHO05D044360 2.6e-24 118.6 448 26.3
arahy.Tifrunner.gnm1.ann1.G5444S Arachis hypogaea HOM05D003956 ORTHO05D004850 1.2e-21 109.8 95 63.2
QL06p005983 Quercus lobata HOM05D003956 ORTHO05D004850 2.0e-21 109.0 130 50.8
TPR.G26738 Trifolium pratense HOM05D003956 ORTHO05D000576 9.5e-19 100.1 64 68.8
BcaC09g50249 Brassica carinata HOM05D003956 ORTHO05D004850 6.8e-17 94.0 82 61.0
TPR.G35464 Trifolium pratense HOM05D003956 ORTHO05D004850 3.4e-16 91.7 60 66.7
MBI15_g32557_MAGBIO Magnolia biondii HOM05D001670 ORTHO05D011598 2.5e-11 75.5 60 65.0
arahy.Tifrunner.gnm1.ann1.57CL3B Arachis hypogaea HOM05D003956 ORTHO05D004850 7.3e-11 73.9 51 70.6
arahy.Tifrunner.gnm1.ann1.V4Y3U4 Arachis hypogaea HOM05D003956 ORTHO05D004850 9.5e-11 73.6 49 73.5
Nn8g40271 Nelumbo nucifera HOM05D001541 ORTHO05D001465 2.3e-09 68.9 63 57.1
Pp3c5_22980 Physcomitrium patens HOM05D003956 ORTHO05D004850 3.1e-09 68.6 43 74.4
HanXRQChr09g0261911 Helianthus annuus HOM05D000495 ORTHO05D000357 8.9e-09 67.0 43 69.8
SGA_v2.0_scaffold86G26869 Striga asiatica HOM05D000924 ORTHO05D001209 9.9e-08 63.5 46 65.2
arahy.Tifrunner.gnm1.ann1.GGZS5I Arachis hypogaea HOM05D003956 ORTHO05D004850 6.4e-07 60.8 76 50.0


User provided reference genes

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