Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp7g13213 Schrenkiella parvula HOM05D006852 ORTHO05D008585 1.5e-117 426.4 249 100.0
BcaNung00310 Brassica carinata HOM05D006852 ORTHO05D008585 6.3e-108 394.4 249 93.6
BcaC09g50182 Brassica carinata HOM05D006852 ORTHO05D008585 1.8e-107 392.9 249 91.6
C01p28040 Brassica napus HOM05D006852 ORTHO05D008585 1.6e-106 389.8 249 90.4
A01p22510 Brassica napus HOM05D006852 ORTHO05D008585 7.8e-106 387.5 249 90.0
Thhalv10026084m.g Eutrema salsugineum HOM05D006852 ORTHO05D008585 3.8e-105 385.2 246 90.7
BolC1t02738H Brassica oleracea HOM05D006852 ORTHO05D008585 1.1e-104 383.6 255 82.4
Carub.0007s2707 Capsella rubella HOM05D006852 ORTHO05D008585 4.3e-104 381.7 249 88.0
CARHR221730 Cardamine hirsuta HOM05D006852 ORTHO05D008585 1.2e-103 380.2 246 90.7
AL7G40800 Arabidopsis lyrata HOM05D006852 ORTHO05D008585 1.8e-102 376.3 278 80.6
AT4G15030 Arabidopsis thaliana HOM05D006852 ORTHO05D008585 1.3e-100 370.2 278 81.7
BraA01t02166Z Brassica rapa HOM05D006852 ORTHO05D008585 5.4e-99 364.8 312 66.7
Aa31LG9G2320 Aethionema arabicum HOM05D006852 ORTHO05D008585 9.8e-93 344.0 279 75.6
THA.LOC104801980 Tarenaya hassleriana HOM05D006852 ORTHO05D008585 9.8e-93 344.0 243 71.2
CiPaw.14G000200 Carya illinoinensis HOM05D006852 ORTHO05D008585 5.2e-86 321.6 245 73.9
Cfa010769 Carpinus fangiana HOM05D006852 ORTHO05D008585 1.2e-85 320.5 244 73.0
Thecc.01G410400 Theobroma cacao HOM05D006852 ORTHO05D008585 9.9e-85 317.4 246 78.5
Manes.07G006500 Manihot esculenta HOM05D006852 ORTHO05D008585 2.9e-84 315.8 245 78.0
Dinv09352 Davidia involucrata HOM05D006852 ORTHO05D008585 4.9e-84 315.1 245 71.0
FvH4_7g01110 Fragaria vesca HOM05D006852 ORTHO05D008585 2.4e-83 312.8 245 75.5
COL.COLO4_31169 Corchorus olitorius HOM05D006852 ORTHO05D008585 3.2e-83 312.4 249 75.9
Lj3g0018236 Lotus japonicus HOM05D006852 ORTHO05D008585 4.1e-83 312.0 245 69.8
Duzib138G0005 Durio zibethinus HOM05D006852 ORTHO05D008585 1.6e-82 310.1 180 80.6
RcHm_v2.0_Chr1g0316111 Rosa chinensis HOM05D006852 ORTHO05D008585 2.7e-82 309.3 246 77.2
Nn7g36210 Nelumbo nucifera HOM05D006852 ORTHO05D008585 6.0e-82 308.1 243 75.7
FAN06G4754 Fragaria x ananassa HOM05D006852 ORTHO05D008585 7.8e-82 307.8 247 74.9
Gohir.A08G144200 Gossypium hirsutum HOM05D006852 ORTHO05D008585 2.3e-81 306.2 180 78.9
Hma1.2p1_0293F.1_g116040 Hydrangea macrophylla HOM05D006852 ORTHO05D008585 2.3e-81 306.2 246 69.9
Atru.chr11.2623 Acer truncatum HOM05D006852 ORTHO05D008585 3.0e-81 305.8 185 80.5
arahy.Tifrunner.gnm1.ann1.5TR8MX Arachis hypogaea HOM05D006852 ORTHO05D008585 3.9e-81 305.4 183 78.1
Psat4g148920 Pisum sativum HOM05D006852 ORTHO05D008585 3.9e-81 305.4 249 73.9
QL04p006320 Quercus lobata HOM05D006852 ORTHO05D008585 3.9e-81 305.4 277 63.9
Glyma.13G202400 Glycine max HOM05D006852 ORTHO05D008585 6.6e-81 304.7 246 69.1
Potri.001G266200 Populus trichocarpa HOM05D006852 ORTHO05D008585 8.6e-81 304.3 243 62.1
CANSAT80G1911 Cannabis sativa HOM05D006852 ORTHO05D008585 1.5e-80 303.5 247 74.9
Ciclev10032186m.g Citrus clementina HOM05D006852 ORTHO05D008585 2.5e-80 302.8 183 78.7
Medtr8g037265 Medicago truncatula HOM05D006852 ORTHO05D008585 2.5e-80 302.8 248 75.8
Gorai.004G172200 Gossypium raimondii HOM05D006852 ORTHO05D008585 3.3e-80 302.4 178 79.2
CAN.G857.11 Capsicum annuum HOM05D006852 ORTHO05D008585 4.3e-80 302.0 243 60.9
Eucgr.G03378 Eucalyptus grandis HOM05D006852 ORTHO05D008585 5.6e-80 301.6 257 59.1
Phvul.011G211400 Phaseolus vulgaris HOM05D006852 ORTHO05D008585 7.3e-80 301.2 180 77.8
Aqoxy1G00289 Aquilegia oxysepala HOM05D006852 ORTHO05D008585 1.2e-79 300.4 244 76.2
Glyma.12G236900 Glycine max HOM05D006852 ORTHO05D008585 1.2e-79 300.4 185 75.1
Gohir.D08G165200 Gossypium hirsutum HOM05D006852 ORTHO05D008585 2.1e-79 299.7 178 78.7
HanXRQChr01g0015721 Helianthus annuus HOM05D006852 ORTHO05D008585 2.8e-79 299.3 242 70.2
Sed0010309 Sechium edule HOM05D006852 ORTHO05D008585 2.8e-79 299.3 243 73.3
TWI79G0862 Tripterygium wilfordii HOM05D006852 ORTHO05D008585 4.7e-79 298.5 248 75.8
Prupe.2G014400 Prunus persica HOM05D006852 ORTHO05D008585 6.2e-79 298.1 180 78.3
Lalb_Chr03g0034091 Lupinus albus HOM05D006852 ORTHO05D008585 8.1e-79 297.7 180 77.8
Lsat_1_v5_gn_1_106940 Lactuca sativa HOM05D006852 ORTHO05D008585 1.4e-78 297.0 244 68.0
ECA248G0614 Erigeron canadensis HOM05D006852 ORTHO05D008585 1.8e-78 296.6 242 68.6
MD07G1011200 Malus domestica HOM05D006852 ORTHO05D008585 1.8e-78 296.6 180 77.8
PSO384G4724 Papaver somniferum HOM05D006852 ORTHO05D008585 2.4e-78 296.2 185 76.2
EL10Ac2g04333 Beta vulgaris HOM05D006852 ORTHO05D008585 3.1e-78 295.8 185 74.6
Solyc04g074660.3 Solanum lycopersicum HOM05D006852 ORTHO05D008585 1.2e-77 293.9 184 74.5
MELO3C023552.2 Cucumis melo HOM05D006852 ORTHO05D008585 1.5e-77 293.5 243 69.1
PSO339G6046 Papaver somniferum HOM05D006852 ORTHO05D008585 1.5e-77 293.5 185 75.1
Sopen04g029630 Solanum pennellii HOM05D006852 ORTHO05D008585 3.4e-77 292.4 184 73.9
Peaxi162Scf00339g00115 Petunia axillaris HOM05D006852 ORTHO05D008585 4.4e-77 292.0 183 74.3
PGR031G2977 Punica granatum HOM05D006852 ORTHO05D008585 4.4e-77 292.0 178 77.5
Nitab4.5_0006579g0050 Nicotiana tabacum HOM05D006852 ORTHO05D008585 1.3e-76 290.4 248 64.5
PGSC0003DMG400030817 Solanum tuberosum HOM05D006852 ORTHO05D008585 2.9e-76 289.3 185 72.4
CsaV3_7G031040 Cucumis sativus L. HOM05D006852 ORTHO05D008585 3.8e-76 288.9 252 67.1
Actinidia31067 Actinidia chinensis HOM05D006852 ORTHO05D008585 4.9e-76 288.5 179 76.5
ATR0332G098 Amborella trichopoda HOM05D006852 ORTHO05D008585 6.4e-76 288.1 240 69.6
Nitab4.5_0000125g0260 Nicotiana tabacum HOM05D006852 ORTHO05D008585 6.4e-76 288.1 248 63.7
AUR62023069 Chenopodium quinoa HOM05D006852 ORTHO05D008585 6.0e-74 281.6 216 63.0
Rhsim07G0056000 Rhododendron simsii HOM05D006852 ORTHO05D008585 3.9e-73 278.9 179 74.9
SEGI_37436 Sequoiadendron giganteum HOM05D006852 ORTHO05D008585 3.9e-73 278.9 183 72.1
Oeu010800.1 Olea europaea HOM05D006852 ORTHO05D008585 5.1e-73 278.5 168 77.4
ClCG09G004140 Citrullus lanatus HOM05D006852 ORTHO05D008585 6.6e-73 278.1 168 76.2
FAN03G0769 Fragaria x ananassa HOM05D006852 ORTHO05D008585 1.1e-72 277.3 299 57.2
vmacro13669 Vaccinium macrocarpon HOM05D006852 ORTHO05D008585 1.5e-72 276.9 299 57.2
Zm00001eb115340 Zea mays HOM05D006852 ORTHO05D008585 1.5e-72 276.9 262 63.7
FAN10G4066 Fragaria x ananassa HOM05D006852 ORTHO05D008585 1.9e-72 276.6 170 78.2
FAN01G0182 Fragaria x ananassa HOM05D006852 ORTHO05D008585 2.5e-72 276.2 169 78.7
Sc10g0000090 Simmondsia chinensis HOM05D006852 ORTHO05D008585 2.5e-72 276.2 175 75.4
HPP92_009588 Vanilla planifolia HOM05D006852 ORTHO05D008585 3.6e-71 272.3 183 69.9
unitig_747.g22049 Utricularia gibba HOM05D006852 ORTHO05D008585 1.1e-70 270.8 181 71.8
Os11g0639000 Oryza sativa ssp. japonica HOM05D006852 ORTHO05D008585 9.9e-69 264.2 169 73.4
Ah.10g038820 Amaranthus hybridus HOM05D006852 ORTHO05D008585 9.3e-67 257.7 212 60.4
Sabra16G0163300 Salix brachista HOM05D006852 ORTHO05D008585 1.6e-66 256.9 270 54.8
TPR.G1866 Trifolium pratense HOM05D006852 ORTHO05D008585 1.3e-65 253.8 152 77.6
SHI04066 Sapria himalayana HOM05D006852 ORTHO05D008585 2.5e-64 249.6 164 73.8
AagrBONN_evm.TU.Sc2ySwM_228.2602 Anthoceros agrestis HOM05D006852 ORTHO05D008585 7.3e-64 248.1 187 64.2
VMungo1127G1814 Vigna mungo HOM05D006852 ORTHO05D008585 9.6e-64 247.7 145 76.6
Cc02_g28030 Coffea canephora HOM05D006852 ORTHO05D008585 4.8e-63 245.4 148 75.7
AUR62009387 Chenopodium quinoa HOM05D006852 ORTHO05D008585 1.8e-62 243.4 202 60.4
Mapoly0009s0102 Marchantia polymorpha HOM05D006852 ORTHO05D008585 1.5e-61 240.4 180 61.7
TAR633G0701 Trochodendron aralioides HOM05D006852 ORTHO05D008585 1.5e-61 240.4 146 75.3
Pp3c2_10540 Physcomitrium patens HOM05D006852 ORTHO05D008585 2.6e-61 239.6 188 62.8
SGA_v2.0_scaffold161G37817 Striga asiatica HOM05D006852 ORTHO05D008585 3.4e-61 239.2 200 63.0
Hund18974 Selenicereus undatus HOM05D006852 ORTHO05D008585 8.7e-57 224.6 284 47.5
MBI04_g36071_MAGBIO Magnolia biondii HOM05D006852 ORTHO05D008585 2.1e-55 219.9 248 56.9
CSS0019030 Camellia sinensis var. sinensis HOM05D006852 ORTHO05D008585 1.2e-53 214.2 255 63.1
arahy.Tifrunner.gnm1.ann1.2WG9D2 Arachis hypogaea HOM05D006852 ORTHO05D008585 2.0e-53 213.4 352 38.9
Haze_03202 Corylus avellana HOM05D006852 ORTHO05D008585 7.6e-53 211.5 154 70.1
CSS0037243 Camellia sinensis var. sinensis HOM05D006852 ORTHO05D008585 9.9e-53 211.1 280 57.9
Hma1.2p1_0293F.1_g116050 Hydrangea macrophylla HOM05D006852 ORTHO05D008585 1.1e-51 207.6 125 78.4
Cre07.g336250 Chlamydomonas reinhardtii HOM05D006852 ORTHO05D008585 2.1e-47 193.4 191 50.3
SalBow6G4338 Salvia bowleyana HOM05D006852 ORTHO05D008585 2.1e-47 193.4 262 43.1
SalBow6G3774 Salvia bowleyana HOM05D006852 ORTHO05D008585 6.2e-47 191.8 131 68.7
GSVIVG01032100001 Vitis vinifera HOM05D006852 ORTHO05D008585 4.5e-45 185.7 168 75.0
Oeu049501.1 Olea europaea HOM05D006852 ORTHO05D008585 2.7e-42 176.4 115 73.9
SMO239G0058 Selaginella moellendorffii HOM05D006852 ORTHO05D008585 4.8e-39 165.6 113 67.3
CBR_g4609 Chara braunii HOM05D006852 ORTHO05D008585 3.1e-38 162.9 118 62.7
Migut.N01601 Erythranthe guttata HOM05D006852 ORTHO05D008585 2.1e-34 150.2 98 71.4
MD02G1310300 Malus domestica HOM05D006852 ORTHO05D008585 2.5e-32 143.3 145 53.1
CDE02G4017 Ceratophyllum demersum HOM05D006852 ORTHO05D008585 3.3e-32 142.9 81 82.7
C03p92530 Brassica napus HOM05D006852 ORTHO05D008585 1.5e-29 134.0 122 80.3
QL11p002033 Quercus lobata HOM05D006852 ORTHO05D008585 5.7e-24 115.5 107 56.1
QL11p002055 Quercus lobata HOM05D006852 ORTHO05D008585 9.1e-22 108.2 163 60.7
QL11p001483 Quercus lobata HOM05D000005 ORTHO05D000012 1.6e-18 97.4 112 47.3
Migut.N01602 Erythranthe guttata HOM05D006852 ORTHO05D008585 9.7e-08 61.6 34 82.4
Cc02_g28050 Coffea canephora HOM05D006852 ORTHO05D008585 1.7e-07 60.8 40 70.0
Ca_23889_v3 Cicer arietinum L. HOM05D006852 ORTHO05D008585 4.8e-07 59.3 29 89.7
CDE02G1038 Ceratophyllum demersum HOM05D005011 ORTHO05D006443 4.1e-06 56.2 38 68.4


User provided reference genes

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