Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp7g12820 Schrenkiella parvula HOM05D004643 ORTHO05D005535 5.7e-178 627.5 320 100.0
Thhalv10025735m.g Eutrema salsugineum HOM05D004643 ORTHO05D005535 8.6e-150 533.9 324 88.6
AT4G14720 Arabidopsis thaliana HOM05D004643 ORTHO05D005535 3.1e-147 525.4 319 87.1
A01p22960 Brassica napus HOM05D004643 ORTHO05D005535 4.4e-146 521.5 320 85.9
BraA01t02209Z Brassica rapa HOM05D004643 ORTHO05D005535 1.1e-144 516.9 321 85.7
Carub.0007s2745 Capsella rubella HOM05D004643 ORTHO05D005535 1.1e-144 516.9 320 85.6
CARHR221190 Cardamine hirsuta HOM05D004643 ORTHO05D005535 6.0e-143 511.1 324 86.1
BcaNung00344 Brassica carinata HOM05D004643 ORTHO05D005535 1.5e-141 506.5 324 83.3
C01p28440 Brassica napus HOM05D004643 ORTHO05D005535 7.3e-141 504.2 320 83.8
BcaC09g50142 Brassica carinata HOM05D004643 ORTHO05D005535 1.4e-139 500.0 323 83.3
BolC1t02783H Brassica oleracea HOM05D004643 ORTHO05D005535 2.3e-139 499.2 321 83.5
AL7G41240 Arabidopsis lyrata HOM05D004643 ORTHO05D005535 5.1e-134 481.5 318 81.4
AL7G41265 Arabidopsis lyrata HOM05D004643 ORTHO05D005535 3.1e-131 472.2 313 82.1
BcaB04g18255 Brassica carinata HOM05D004643 ORTHO05D005535 4.4e-130 468.4 322 82.3
Carub.0007s2747 Capsella rubella HOM05D004643 ORTHO05D005535 3.2e-128 462.2 313 81.2
BolC8t48230H Brassica oleracea HOM05D004643 ORTHO05D005535 5.4e-128 461.5 327 81.0
BraA08t33131Z Brassica rapa HOM05D004643 ORTHO05D005535 5.6e-125 451.4 318 81.4
A08p11380 Brassica napus HOM05D004643 ORTHO05D005535 7.3e-125 451.1 318 81.4
BcaC07g37843 Brassica carinata HOM05D004643 ORTHO05D005535 1.1e-123 447.2 353 75.1
Aa31LG9G2640 Aethionema arabicum HOM05D004643 ORTHO05D005535 1.0e-102 377.5 356 62.4
THA.LOC104803050 Tarenaya hassleriana HOM05D004643 ORTHO05D005535 7.4e-101 371.3 339 63.7
AT4G14713 Arabidopsis thaliana HOM05D004643 ORTHO05D005535 2.4e-99 366.3 227 82.8
THA.LOC104808573 Tarenaya hassleriana HOM05D004643 ORTHO05D005535 2.1e-95 353.2 348 58.6
Thecc.04G238200 Theobroma cacao HOM05D004643 ORTHO05D005535 9.4e-72 274.6 335 50.1
Cpa.g.sc44.119 Carica papaya HOM05D004643 ORTHO05D005535 3.3e-69 266.2 303 52.8
CARHR221170 Cardamine hirsuta HOM05D004643 ORTHO05D005535 1.1e-67 261.2 310 55.8
Manes.15G032500 Manihot esculenta HOM05D004643 ORTHO05D005535 3.1e-67 259.6 342 47.7
Haze_11230 Corylus avellana HOM05D004643 ORTHO05D005535 4.1e-67 259.2 340 47.4
GSVIVG01018038001 Vitis vinifera HOM05D004643 ORTHO05D005535 2.9e-65 253.1 322 50.0
Prupe.1G020900 Prunus persica HOM05D004643 ORTHO05D005535 6.5e-65 251.9 339 47.5
Duzib151G1159 Durio zibethinus HOM05D004643 ORTHO05D005535 4.2e-64 249.2 343 48.4
Ciclev10005357m.g Citrus clementina HOM05D004643 ORTHO05D005535 4.7e-63 245.7 347 46.7
CsaV3_2G013410 Cucumis sativus L. HOM05D004643 ORTHO05D005535 1.4e-62 244.2 342 45.3
MD16G1199200 Malus domestica HOM05D004643 ORTHO05D005535 5.2e-62 242.3 344 47.1
Sed0027490 Sechium edule HOM05D004643 ORTHO05D005535 1.5e-61 240.7 340 45.6
QL06p001136 Quercus lobata HOM05D004643 ORTHO05D005535 4.4e-61 239.2 357 44.5
CiPaw.02G121300 Carya illinoinensis HOM05D004643 ORTHO05D005535 5.7e-61 238.8 332 48.2
MD13G1199500 Malus domestica HOM05D004643 ORTHO05D005535 7.5e-61 238.4 347 46.1
ClCG06G006490 Citrullus lanatus HOM05D004643 ORTHO05D005535 1.7e-60 237.3 321 46.7
CANSAT78G2233 Cannabis sativa HOM05D004643 ORTHO05D005535 8.3e-60 235.0 332 46.4
Atru.chr4.2372 Acer truncatum HOM05D004643 ORTHO05D005535 4.5e-58 229.2 340 44.4
Sed0024780 Sechium edule HOM05D004643 ORTHO05D005535 1.3e-57 227.6 275 49.5
Atru.chr4.2396 Acer truncatum HOM05D004643 ORTHO05D005535 1.7e-57 227.3 340 44.1
COL.COLO4_21561 Corchorus olitorius HOM05D004643 ORTHO05D005535 1.7e-57 227.3 303 47.5
RcHm_v2.0_Chr4g0387691 Rosa chinensis HOM05D004643 ORTHO05D005535 1.1e-56 224.6 334 45.2
TAR362G0460 Trochodendron aralioides HOM05D004643 ORTHO05D005535 1.2e-55 221.1 342 45.0
Nn6g34159 Nelumbo nucifera HOM05D004643 ORTHO05D005535 6.1e-55 218.8 343 42.9
Manes.03G173500 Manihot esculenta HOM05D004643 ORTHO05D005535 1.4e-54 217.6 271 49.1
Lj5g0008364 Lotus japonicus HOM05D004643 ORTHO05D005535 3.0e-54 216.5 351 41.9
FAN12G4007 Fragaria x ananassa HOM05D004643 ORTHO05D005535 4.0e-54 216.1 343 44.0
Eucgr.H03414 Eucalyptus grandis HOM05D004643 ORTHO05D005535 1.2e-53 214.5 277 49.1
Gorai.011G168900 Gossypium raimondii HOM05D004643 ORTHO05D005535 1.2e-53 214.5 357 44.0
FvH4_4g01120 Fragaria vesca HOM05D004643 ORTHO05D005535 2.0e-53 213.8 343 43.7
VMungo0720G0668 Vigna mungo HOM05D004643 ORTHO05D005535 2.0e-53 213.8 338 42.0
TWI53G0950 Tripterygium wilfordii HOM05D004643 ORTHO05D005535 4.4e-53 212.6 335 44.5
Gohir.D10G151600 Gossypium hirsutum HOM05D004643 ORTHO05D005535 9.8e-53 211.5 359 44.3
Phvul.007G061400 Phaseolus vulgaris HOM05D004643 ORTHO05D005535 2.2e-52 210.3 343 40.2
PGR004G2239 Punica granatum HOM05D004643 ORTHO05D005535 4.9e-52 209.1 350 43.1
Gohir.A10G113842 Gossypium hirsutum HOM05D004643 ORTHO05D005535 8.3e-52 208.4 361 43.8
MBI11_g22675_MAGBIO Magnolia biondii HOM05D004643 ORTHO05D005535 3.1e-51 206.5 353 43.6
TPR.G26097 Trifolium pratense HOM05D004643 ORTHO05D005535 4.1e-51 206.1 350 41.7
FAN22G0811 Fragaria x ananassa HOM05D002305 ORTHO05D002528 1.6e-50 204.1 269 47.2
Hma1.2p1_0172F.1_g075970 Hydrangea macrophylla HOM05D004643 ORTHO05D005535 1.6e-50 204.1 334 42.2
Medtr1g102900 Medicago truncatula HOM05D004643 ORTHO05D005535 1.6e-50 204.1 352 41.5
Glyma.20G150000 Glycine max HOM05D004643 ORTHO05D005535 3.5e-50 203.0 347 40.9
FAN17G1992 Fragaria x ananassa HOM05D002305 ORTHO05D002528 4.5e-50 202.6 269 47.2
Lalb_Chr21g0304771 Lupinus albus HOM05D004643 ORTHO05D005535 7.8e-50 201.8 325 43.1
Glyma.10G244400 Glycine max HOM05D004643 ORTHO05D005535 1.7e-49 200.7 342 42.1
Dinv22507 Davidia involucrata HOM05D004643 ORTHO05D005535 2.9e-49 199.9 343 42.9
Ca_10855_v3 Cicer arietinum L. HOM05D004643 ORTHO05D005535 3.8e-49 199.5 339 42.2
Nn1g02445 Nelumbo nucifera HOM05D004643 ORTHO05D005535 8.6e-49 198.4 269 45.4
MELO3C014283.2 Cucumis melo HOM05D004643 ORTHO05D005535 4.3e-48 196.1 321 40.8
Psat6g204360 Pisum sativum HOM05D004643 ORTHO05D005535 7.3e-48 195.3 277 44.0
AUR62034685 Chenopodium quinoa HOM05D004643 ORTHO05D005535 1.6e-47 194.1 349 41.0
AUR62024080 Chenopodium quinoa HOM05D004643 ORTHO05D005535 2.1e-47 193.7 316 44.0
Ciclev10021137m.g Citrus clementina HOM05D004643 ORTHO05D005535 2.8e-47 193.4 340 40.3
CSS0031620 Camellia sinensis var. sinensis HOM05D004643 ORTHO05D005535 4.7e-47 192.6 337 41.5
GSVIVG01003113001 Vitis vinifera HOM05D004643 ORTHO05D005535 3.0e-46 189.9 343 41.4
Gorai.004G077100 Gossypium raimondii HOM05D004643 ORTHO05D005535 5.2e-46 189.1 337 41.2
Potri.002G048500 Populus trichocarpa HOM05D004643 ORTHO05D005535 4.4e-45 186.0 344 38.4
TAR636G3033 Trochodendron aralioides HOM05D004643 ORTHO05D005535 4.4e-45 186.0 349 39.8
PSO170G0554 Papaver somniferum HOM05D004643 ORTHO05D005535 7.5e-45 185.3 295 42.4
Aqoxy5G00405 Aquilegia oxysepala HOM05D004643 ORTHO05D005535 1.7e-44 184.1 348 39.1
Actinidia19959 Actinidia chinensis HOM05D004643 ORTHO05D005535 2.2e-44 183.7 322 43.2
DCAR_002706 Daucus carota HOM05D004643 ORTHO05D005535 2.2e-44 183.7 339 41.6
Duzib133G1145 Durio zibethinus HOM05D004643 ORTHO05D005535 3.7e-44 183.0 270 43.0
Atru.chr5.1514 Acer truncatum HOM05D004643 ORTHO05D005535 1.4e-43 181.0 338 39.9
Potri.005G214300 Populus trichocarpa HOM05D004643 ORTHO05D005535 1.8e-43 180.6 349 37.5
Thecc.01G272300 Theobroma cacao HOM05D004643 ORTHO05D005535 2.4e-43 180.3 296 41.2
PSO210G1486 Papaver somniferum HOM05D004643 ORTHO05D005535 4.1e-43 179.5 295 41.4
Gorai.008G002400 Gossypium raimondii HOM05D004643 ORTHO05D005535 5.4e-43 179.1 346 40.8
Gohir.A12G002900 Gossypium hirsutum HOM05D004643 ORTHO05D005535 9.2e-43 178.3 345 39.4
Gohir.D12G002600 Gossypium hirsutum HOM05D004643 ORTHO05D005535 3.5e-42 176.4 338 40.5
MSTRG.21530 Avicennia marina HOM05D004643 ORTHO05D005535 5.9e-42 175.6 291 41.9
Lsat_1_v5_gn_5_185821 Lactuca sativa HOM05D004643 ORTHO05D005535 5.9e-42 175.6 273 42.5
Migut.N02031 Erythranthe guttata HOM05D004643 ORTHO05D005535 1.3e-41 174.5 296 41.2
Duzib211G0433 Durio zibethinus HOM05D004643 ORTHO05D005535 3.0e-41 173.3 294 41.2
SalBow4G2540 Salvia bowleyana HOM05D004643 ORTHO05D005535 3.0e-41 173.3 266 40.6
Dinv32890 Davidia involucrata HOM05D004643 ORTHO05D005535 3.9e-41 172.9 187 52.9
Cc01_g19060 Coffea canephora HOM05D004643 ORTHO05D005535 8.6e-41 171.8 302 41.1
Duzib138G1309 Durio zibethinus HOM05D004643 ORTHO05D005535 8.6e-41 171.8 295 42.4
Gohir.A08G064300 Gossypium hirsutum HOM05D004643 ORTHO05D005535 8.6e-41 171.8 271 42.1
Migut.O00727 Erythranthe guttata HOM05D004643 ORTHO05D005535 1.5e-40 171.0 295 40.0
CAN.G380.10 Capsicum annuum HOM05D004643 ORTHO05D005535 3.3e-40 169.9 279 41.6
Sabra05G0163800 Salix brachista HOM05D004643 ORTHO05D005535 3.3e-40 169.9 353 35.7
Actinidia09108 Actinidia chinensis HOM05D004643 ORTHO05D005535 9.5e-40 168.3 328 41.2
unitig_0.g136 Utricularia gibba HOM05D004643 ORTHO05D005535 1.6e-39 167.5 300 39.7
HanXRQChr11g0338851 Helianthus annuus HOM05D004643 ORTHO05D005535 3.6e-39 166.4 279 40.5
HanXRQChr01g0005571 Helianthus annuus HOM05D004643 ORTHO05D005535 6.2e-39 165.6 282 41.1
Sopen09g027380 Solanum pennellii HOM05D004643 ORTHO05D005535 1.1e-38 164.9 307 39.7
Solyc09g065630.3 Solanum lycopersicum HOM05D004643 ORTHO05D005535 1.4e-38 164.5 291 41.2
ECA248G3352 Erigeron canadensis HOM05D004643 ORTHO05D005535 3.1e-38 163.3 280 38.9
SGA_v2.0_scaffold138G35301 Striga asiatica HOM05D004643 ORTHO05D005535 1.5e-37 161.0 342 36.5
TWI73G0832 Tripterygium wilfordii HOM05D004643 ORTHO05D005535 9.8e-37 158.3 227 45.8
Nitab4.5_0015056g0010 Nicotiana tabacum HOM05D004643 ORTHO05D005535 1.7e-36 157.5 278 40.6
Solyc06g084120.4 Solanum lycopersicum HOM05D004643 ORTHO05D005535 1.7e-36 157.5 277 41.5
Nitab4.5_0001044g0010 Nicotiana tabacum HOM05D004643 ORTHO05D005535 2.9e-36 156.8 340 37.1
MSTRG.18264 Avicennia marina HOM05D004643 ORTHO05D005535 3.7e-36 156.4 187 47.1
PGSC0003DMG400019346 Solanum tuberosum HOM05D004643 ORTHO05D005535 4.9e-36 156.0 291 38.8
SGA_v2.0_scaffold1G00527 Striga asiatica HOM05D004643 ORTHO05D005535 6.4e-36 155.6 266 40.2
PGSC0003DMG401020059 Solanum tuberosum HOM05D004643 ORTHO05D005535 1.1e-35 154.8 352 36.9
EL10Ac3g06512 Beta vulgaris HOM05D004643 ORTHO05D005535 1.9e-35 154.1 191 47.6
CAN.G771.7 Capsicum annuum HOM05D004643 ORTHO05D005535 1.9e-35 154.1 293 39.9
HPP92_023542 Vanilla planifolia HOM05D004643 ORTHO05D005535 1.9e-35 154.1 303 40.3
CDE10G0665 Ceratophyllum demersum HOM05D004643 ORTHO05D005535 9.2e-35 151.8 277 40.8
Manes.05G081400 Manihot esculenta HOM05D004643 ORTHO05D005535 1.2e-34 151.4 187 47.1
Nitab4.5_0000252g0230 Nicotiana tabacum HOM05D004643 ORTHO05D005535 1.7e-33 147.5 282 38.3
Rhsim13G0028400 Rhododendron simsii HOM05D004643 ORTHO05D005535 3.0e-33 146.7 401 34.7
Sopen06g035500 Solanum pennellii HOM05D004643 ORTHO05D005535 3.0e-33 146.7 264 40.5
Lsat_1_v5_gn_8_94021 Lactuca sativa HOM05D004643 ORTHO05D005535 3.9e-33 146.4 290 39.3
Peaxi162Scf00230g00029 Petunia axillaris HOM05D004643 ORTHO05D005535 5.0e-33 146.0 319 37.0
Ah.00g000940 Amaranthus hybridus HOM05D004643 ORTHO05D005535 6.6e-33 145.6 193 47.2
Nitab4.5_0000871g0020 Nicotiana tabacum HOM05D004643 ORTHO05D005535 1.6e-31 141.0 280 37.1
CDE10G0709 Ceratophyllum demersum HOM05D004643 ORTHO05D005535 1.4e-30 137.9 290 38.6
Sabra02G0039600 Salix brachista HOM05D004643 ORTHO05D005535 2.3e-30 137.1 344 34.6
CiPaw.01G195600 Carya illinoinensis HOM05D004643 ORTHO05D005535 8.9e-30 135.2 225 41.3
Gohir.D08G072800 Gossypium hirsutum HOM05D004643 ORTHO05D005535 3.4e-29 133.3 272 38.2
Lj2C1166G12 Lonicera japonica HOM05D004643 ORTHO05D005535 9.2e-27 125.2 338 32.8
ATR0665G494 Amborella trichopoda HOM05D004643 ORTHO05D005535 1.3e-25 121.3 287 34.1
Sc13g0004740 Simmondsia chinensis HOM05D004643 ORTHO05D005535 6.6e-25 119.0 207 38.2
BcaC07g37844 Brassica carinata HOM05D004643 ORTHO05D005535 8.6e-25 118.6 95 74.7
SHI00517 Sapria himalayana HOM05D004643 ORTHO05D005535 1.1e-24 118.2 290 32.4
SEGI_27968 Sequoiadendron giganteum HOM05D004643 ORTHO05D005535 1.1e-24 118.2 264 38.6
SMO356G0236 Selaginella moellendorffii HOM05D004643 ORTHO05D005535 2.4e-22 110.5 261 35.2
unitig_60.g25785 Utricularia gibba HOM05D004643 ORTHO05D005535 4.0e-22 109.8 296 33.1
Ah.11g047360 Amaranthus hybridus HOM05D004643 ORTHO05D005535 5.8e-21 105.9 101 56.4
Hund22704 Selenicereus undatus HOM05D004643 ORTHO05D005535 1.9e-19 100.9 95 54.7
TAR365G0093 Trochodendron aralioides HOM05D001497 ORTHO05D001707 4.1e-19 99.8 190 38.9
SMO348G0038 Selaginella moellendorffii HOM05D004643 ORTHO05D005535 1.6e-18 97.8 255 31.8
SMO153G0002 Selaginella moellendorffii HOM05D004643 ORTHO05D005535 6.6e-17 92.4 241 30.7
Oeu047217.1 Olea europaea HOM05D004643 ORTHO05D005535 1.5e-16 91.3 98 53.1
Peaxi162Scf00608g00922 Petunia axillaris HOM05D004643 ORTHO05D005535 4.3e-16 89.7 236 34.3
Oeu047218.1 Olea europaea HOM05D004643 ORTHO05D005535 9.0e-14 82.0 142 38.7
CBR_g49108 Chara braunii HOM05D000004 ORTHO05D038404 1.1e-11 75.1 56 62.5
vmacro02609 Vaccinium macrocarpon HOM05D004643 ORTHO05D005535 1.9e-11 74.3 198 34.3
COL.COLO4_09197 Corchorus olitorius HOM05D004643 ORTHO05D005535 5.4e-11 72.8 114 42.1
Sabra06G0167500 Salix brachista HOM05D001047 ORTHO05D000768 1.6e-07 61.2 139 30.9
CDE04G1925 Ceratophyllum demersum HOM05D001047 ORTHO05D000768 4.8e-07 59.7 143 32.2
A02p19630 Brassica napus HOM05D001047 ORTHO05D000768 6.2e-07 59.3 236 29.2
BraA02t06999Z Brassica rapa HOM05D001047 ORTHO05D000768 6.2e-07 59.3 236 29.2
MBI13_g09073_MAGBIO Magnolia biondii HOM05D001047 ORTHO05D000768 8.1e-07 58.9 157 31.8
Potri.018G047100 Populus trichocarpa HOM05D001047 ORTHO05D000768 8.1e-07 58.9 151 28.5
PSO724G1109 Papaver somniferum HOM05D001047 ORTHO05D000768 1.4e-06 58.2 95 37.9
arahy.Tifrunner.gnm1.ann1.76C240 Arachis hypogaea HOM05D001047 ORTHO05D000768 1.8e-06 57.8 201 32.3
Potri.006G217200 Populus trichocarpa HOM05D001047 ORTHO05D000768 1.8e-06 57.8 148 28.4
FvH4_4g33850 Fragaria vesca HOM05D002346 ORTHO05D002452 2.4e-06 57.4 53 50.9
FAN07G0308 Fragaria x ananassa HOM05D002346 ORTHO05D002452 2.4e-06 57.4 53 50.9
FAN12G1941 Fragaria x ananassa HOM05D002346 ORTHO05D002452 2.4e-06 57.4 53 50.9
FAN22G0391 Fragaria x ananassa HOM05D002346 ORTHO05D002452 2.4e-06 57.4 53 50.9
CBR_g25753 Chara braunii HOM05D003995 ORTHO05D004800 5.3e-06 56.2 61 42.6
PSO386G0059 Papaver somniferum HOM05D001047 ORTHO05D000768 5.3e-06 56.2 137 29.9
Zm00001eb019470 Zea mays HOM05D001047 ORTHO05D000768 5.3e-06 56.2 109 37.6
Glyma.09G077500 Glycine max HOM05D001047 ORTHO05D000768 9.0e-06 55.5 136 34.6
Glyma.15G184900 Glycine max HOM05D001047 ORTHO05D000768 9.0e-06 55.5 123 35.8
Os03g0402800 Oryza sativa ssp. japonica HOM05D001047 ORTHO05D000768 9.0e-06 55.5 101 37.6


User provided reference genes

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