Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp7g12530 Schrenkiella parvula HOM05D003940 ORTHO05D004461 8.8e-54 213.4 109 100.0
Thhalv10027546m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 2.0e-34 149.1 109 75.2
BcaC02g09310 Brassica carinata HOM05D003940 ORTHO05D004461 1.6e-31 139.4 109 70.6
C04p41270 Brassica napus HOM05D003940 ORTHO05D004461 1.6e-31 139.4 109 70.6
BolC4t25705H Brassica oleracea HOM05D003940 ORTHO05D004461 1.6e-31 139.4 109 70.6
A04p07580 Brassica napus HOM05D003940 ORTHO05D004461 2.1e-31 139.0 109 71.6
BcaB02g08606 Brassica carinata HOM05D003940 ORTHO05D004461 3.6e-31 138.3 109 70.6
BraA04t16449Z Brassica rapa HOM05D003940 ORTHO05D004461 4.7e-31 137.9 109 70.6
AT4G14450 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 1.5e-29 132.9 109 67.0
AL7G41690 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 8.3e-28 127.1 109 64.2
CARHR220660 Cardamine hirsuta HOM05D003940 ORTHO05D004461 1.4e-22 109.8 109 60.6
Carub.0007s2777 Capsella rubella HOM05D003940 ORTHO05D004461 4.4e-21 104.8 111 55.0
Thhalv10021654m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 7.0e-19 97.4 111 51.4
BcaB06g26449 Brassica carinata HOM05D003940 ORTHO05D004461 9.2e-19 97.1 111 55.0
A07p09330 Brassica napus HOM05D003940 ORTHO05D004461 1.2e-18 96.7 112 55.4
C07p14380 Brassica napus HOM05D003940 ORTHO05D004461 2.7e-18 95.5 111 53.2
BraA07t28731Z Brassica rapa HOM05D003940 ORTHO05D004461 3.5e-18 95.1 112 54.5
THA.LOC104822808 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 4.5e-18 94.7 105 52.4
AT3G23170 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 1.0e-17 93.6 113 54.0
BolC7t41935H Brassica oleracea HOM05D003940 ORTHO05D004461 2.3e-17 92.4 111 52.3
THA.LOC104822248 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 2.3e-17 92.4 104 51.0
AL3G37790 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 2.9e-17 92.0 113 52.2
Aa31LG8G9650 Aethionema arabicum HOM05D003940 ORTHO05D004461 6.6e-17 90.9 116 50.0
CARHR099110 Cardamine hirsuta HOM05D003940 ORTHO05D004461 6.6e-17 90.9 102 56.9
THA.LOC104808609 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 8.6e-17 90.5 106 50.0
Duzib151G0370 Durio zibethinus HOM05D003940 ORTHO05D004461 7.3e-16 87.4 111 45.0
Cpa.g.sc44.90 Carica papaya HOM05D003940 ORTHO05D004461 9.5e-16 87.0 108 46.3
BraA03t13459Z Brassica rapa HOM05D003940 ORTHO05D004461 1.6e-15 86.3 111 49.5
COL.COLO4_15828 Corchorus olitorius HOM05D003940 ORTHO05D004461 1.6e-15 86.3 113 46.9
Cfa008351 Carpinus fangiana HOM05D003940 ORTHO05D004461 3.6e-15 85.1 103 50.5
Glyma.10G188200 Glycine max HOM05D003940 ORTHO05D004461 8.0e-15 84.0 92 53.3
Duzib212G0271 Durio zibethinus HOM05D003940 ORTHO05D004461 1.0e-14 83.6 111 44.1
Glyma.20G202600 Glycine max HOM05D003940 ORTHO05D004461 1.0e-14 83.6 93 52.7
Hma1.2p1_0986F.1_g244370 Hydrangea macrophylla HOM05D003940 ORTHO05D004461 1.8e-14 82.8 102 48.0
Phvul.007G129450 Phaseolus vulgaris HOM05D003940 ORTHO05D004461 1.8e-14 82.8 92 52.2
Ca_09815_v3 Cicer arietinum L. HOM05D003940 ORTHO05D004461 3.0e-14 82.0 99 45.5
Gohir.D10G154400 Gossypium hirsutum HOM05D003940 ORTHO05D004461 3.0e-14 82.0 113 43.4
Gorai.011G172300 Gossypium raimondii HOM05D003940 ORTHO05D004461 3.0e-14 82.0 113 43.4
Carub.0003s2339 Capsella rubella HOM05D003940 ORTHO05D004461 4.0e-14 81.6 113 47.8
A03p43180 Brassica napus HOM05D003940 ORTHO05D004461 5.2e-14 81.3 105 49.5
Thecc.04G250000 Theobroma cacao HOM05D003940 ORTHO05D004461 5.2e-14 81.3 111 44.1
CANSAT78G1835 Cannabis sativa HOM05D003940 ORTHO05D004461 1.5e-13 79.7 108 44.4
FvH4_4g03100 Fragaria vesca HOM05D003940 ORTHO05D004461 2.0e-13 79.3 112 45.5
FAN22G2069 Fragaria x ananassa HOM05D003940 ORTHO05D004461 2.0e-13 79.3 112 45.5
TPR.G26431 Trifolium pratense HOM05D006440 ORTHO05D003987 2.0e-13 79.3 109 46.8
Sp3g20820 Schrenkiella parvula HOM05D003940 ORTHO05D004461 2.6e-13 79.0 104 48.1
CiPaw.01G188000 Carya illinoinensis HOM05D003940 ORTHO05D004461 3.4e-13 78.6 112 48.2
Psat6g132880 Pisum sativum HOM05D003940 ORTHO05D004461 3.4e-13 78.6 95 47.4
Gohir.A09G225100 Gossypium hirsutum HOM05D003940 ORTHO05D004461 5.8e-13 77.8 113 39.8
GSVIVG01027728001 Vitis vinifera HOM05D000515 ORTHO05D003188 5.8e-13 77.8 99 47.5
Lalb_Chr21g0312371 Lupinus albus HOM05D003940 ORTHO05D004461 7.5e-13 77.4 94 47.9
Gohir.D09G226800 Gossypium hirsutum HOM05D003940 ORTHO05D004461 9.8e-13 77.0 113 38.9
Gorai.006G248700 Gossypium raimondii HOM05D003940 ORTHO05D004461 1.3e-12 76.6 113 38.9
Lalb_Chr19g0128361 Lupinus albus HOM05D003940 ORTHO05D004461 1.3e-12 76.6 99 50.5
Haze_11334 Corylus avellana HOM05D003940 ORTHO05D004461 1.7e-12 76.3 100 48.0
Gohir.A10G112500 Gossypium hirsutum HOM05D003940 ORTHO05D004461 1.7e-12 76.3 113 42.5
FAN17G2041 Fragaria x ananassa HOM05D003940 ORTHO05D004461 2.2e-12 75.9 109 45.9
Psat6g138240 Pisum sativum HOM05D003940 ORTHO05D004461 2.2e-12 75.9 111 42.3
Gohir.A02G037100 Gossypium hirsutum HOM05D003940 ORTHO05D004461 2.9e-12 75.5 107 42.1
FAN12G3937 Fragaria x ananassa HOM05D003940 ORTHO05D004461 3.7e-12 75.1 109 45.9
Lj5g0009696 Lotus japonicus HOM05D003940 ORTHO05D004461 3.7e-12 75.1 92 47.8
RcHm_v2.0_Chr4g0391391 Rosa chinensis HOM05D003940 ORTHO05D004461 3.7e-12 75.1 112 43.8
TPR.G15869 Trifolium pratense HOM05D003940 ORTHO05D004461 3.7e-12 75.1 105 43.8
DCAR_027292 Daucus carota HOM05D003940 ORTHO05D004461 6.4e-12 74.3 103 42.7
DCAR_027293 Daucus carota HOM05D003940 ORTHO05D004461 6.4e-12 74.3 103 42.7
PGSC0003DMG400016324 Solanum tuberosum HOM05D003940 ORTHO05D004461 6.4e-12 74.3 99 48.5
Dinv44656 Davidia involucrata HOM05D003940 ORTHO05D004461 8.3e-12 73.9 102 48.0
Gohir.D02G043800 Gossypium hirsutum HOM05D003940 ORTHO05D004461 8.3e-12 73.9 107 42.1
MD13G1210200 Malus domestica HOM05D003940 ORTHO05D004461 8.3e-12 73.9 115 43.5
MD16G1213100 Malus domestica HOM05D003940 ORTHO05D004461 8.3e-12 73.9 110 41.8
Atru.chr4.2138 Acer truncatum HOM05D003940 ORTHO05D004461 1.1e-11 73.6 94 52.1
Prupe.1G034700 Prunus persica HOM05D003940 ORTHO05D004461 1.1e-11 73.6 101 44.6
Gorai.005G048200 Gossypium raimondii HOM05D003940 ORTHO05D004461 1.4e-11 73.2 107 42.1
Potri.008G164801 Populus trichocarpa HOM05D003940 ORTHO05D004461 1.9e-11 72.8 106 48.1
PGR004G1022 Punica granatum HOM05D003940 ORTHO05D004461 1.9e-11 72.8 105 41.9
AUR62002262 Chenopodium quinoa HOM05D003940 ORTHO05D004461 3.2e-11 72.0 98 42.9
Hma1.2p1_0310F.1_g120730 Hydrangea macrophylla HOM05D003940 ORTHO05D004461 3.2e-11 72.0 113 42.5
Solyc06g053700.1 Solanum lycopersicum HOM05D003940 ORTHO05D004461 3.2e-11 72.0 98 43.9
Sopen06g018810 Solanum pennellii HOM05D003940 ORTHO05D004461 3.2e-11 72.0 98 43.9
Sabra10G0034600 Salix brachista HOM05D003940 ORTHO05D004461 4.1e-11 71.6 106 46.2
Oeu025569.1 Olea europaea HOM05D003940 ORTHO05D004461 5.4e-11 71.2 103 42.7
Sed0016632 Sechium edule HOM05D003940 ORTHO05D004461 5.4e-11 71.2 112 42.9
TAR362G0514 Trochodendron aralioides HOM05D003940 ORTHO05D004461 5.4e-11 71.2 110 42.7
Medtr1g044125 Medicago truncatula HOM05D003940 ORTHO05D004461 7.0e-11 70.9 89 47.2
TAR602G0001 Trochodendron aralioides HOM05D003940 ORTHO05D004461 7.0e-11 70.9 109 46.8
Nitab4.5_0000342g0180 Nicotiana tabacum HOM05D003940 ORTHO05D004461 1.6e-10 69.7 108 39.8
Peaxi162Scf00024g01711 Petunia axillaris HOM05D003940 ORTHO05D004461 1.6e-10 69.7 107 42.1
PGSC0003DMG400017255 Solanum tuberosum HOM05D003940 ORTHO05D004461 2.0e-10 69.3 104 43.3
Aa31LG9G2850 Aethionema arabicum HOM05D003940 ORTHO05D004461 3.5e-10 68.6 109 44.0
SalBow3G4424 Salvia bowleyana HOM05D003940 ORTHO05D004461 3.5e-10 68.6 91 45.1
Sopen09g032590 Solanum pennellii HOM05D003940 ORTHO05D004461 3.5e-10 68.6 106 42.5
Ciclev10006290m.g Citrus clementina HOM05D003940 ORTHO05D004461 4.6e-10 68.2 105 44.8
Cc03_g05120 Coffea canephora HOM05D003940 ORTHO05D004461 4.6e-10 68.2 101 41.6
QL06p016655 Quercus lobata HOM05D003940 ORTHO05D004461 4.6e-10 68.2 104 46.2
Actinidia04462 Actinidia chinensis HOM05D003940 ORTHO05D004461 6.0e-10 67.8 98 40.8
EL10Ac3g05913 Beta vulgaris HOM05D003940 ORTHO05D004461 6.0e-10 67.8 97 44.3
AUR62015478 Chenopodium quinoa HOM05D000816 ORTHO05D005265 7.8e-10 67.4 103 45.6
Nitab4.5_0007234g0020 Nicotiana tabacum HOM05D003940 ORTHO05D004461 7.8e-10 67.4 108 39.8
Migut.G00452 Erythranthe guttata HOM05D003940 ORTHO05D004461 1.0e-09 67.0 100 42.0
PGR031G1035 Punica granatum HOM05D003940 ORTHO05D004461 1.0e-09 67.0 91 49.5
Migut.G00451 Erythranthe guttata HOM05D003940 ORTHO05D004461 1.3e-09 66.6 99 41.4
Glyma.10G008021 Glycine max HOM05D003940 ORTHO05D004461 1.7e-09 66.2 95 43.2
Oeu063884.1 Olea europaea HOM05D003940 ORTHO05D004461 1.7e-09 66.2 103 38.8
Peaxi162Scf00325g00015 Petunia axillaris HOM05D003940 ORTHO05D004461 1.7e-09 66.2 106 44.3
Gorai.006G070500 Gossypium raimondii HOM05D003940 ORTHO05D004461 3.0e-09 65.5 110 44.5
Sc19g0003500 Simmondsia chinensis HOM05D003940 ORTHO05D004461 3.0e-09 65.5 94 45.7
CSS0017531 Camellia sinensis var. sinensis HOM05D003940 ORTHO05D004461 5.0e-09 64.7 104 41.3
Lsat_1_v5_gn_5_72560 Lactuca sativa HOM05D003940 ORTHO05D004461 5.0e-09 64.7 90 45.6
Potri.010G073900 Populus trichocarpa HOM05D003940 ORTHO05D004461 5.0e-09 64.7 108 44.4
Rhsim04G0188200 Rhododendron simsii HOM05D003940 ORTHO05D004461 5.0e-09 64.7 108 38.9
MSTRG.9915 Avicennia marina HOM05D003940 ORTHO05D004461 6.6e-09 64.3 99 41.4
Gohir.D09G056900 Gossypium hirsutum HOM05D003940 ORTHO05D004461 6.6e-09 64.3 110 43.6
Solyc09g089650.1 Solanum lycopersicum HOM05D003940 ORTHO05D004461 6.6e-09 64.3 106 41.5
CSS0034657 Camellia sinensis var. sinensis HOM05D003940 ORTHO05D004461 8.6e-09 63.9 100 43.0
Peaxi162Scf00325g00012 Petunia axillaris HOM05D003940 ORTHO05D004461 8.6e-09 63.9 103 45.6
TWI09G0780 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 8.6e-09 63.9 101 41.6
Manes.15G038200 Manihot esculenta HOM05D003940 ORTHO05D004461 1.1e-08 63.5 110 42.7
ClCG06G006840 Citrullus lanatus HOM05D003940 ORTHO05D004461 1.9e-08 62.8 98 48.0
Sc25g0004050 Simmondsia chinensis HOM05D003940 ORTHO05D004461 1.9e-08 62.8 91 47.3
TWI73G0411 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 1.9e-08 62.8 92 44.6
vmacro08448 Vaccinium macrocarpon HOM05D003940 ORTHO05D004461 2.5e-08 62.4 103 38.8
Gohir.A09G057700 Gossypium hirsutum HOM05D003940 ORTHO05D004461 3.3e-08 62.0 109 43.1
Lj6g0004880 Lotus japonicus HOM05D003940 ORTHO05D004461 3.3e-08 62.0 95 41.1
Medtr1g073910 Medicago truncatula HOM05D003940 ORTHO05D004461 3.3e-08 62.0 89 43.8
Phvul.007G272100 Phaseolus vulgaris HOM05D003940 ORTHO05D004461 3.3e-08 62.0 93 43.0
BcaC05g24452 Brassica carinata HOM05D003940 ORTHO05D004461 4.3e-08 61.6 98 46.9
VMungo0720G0726 Vigna mungo HOM05D003940 ORTHO05D004461 4.3e-08 61.6 92 42.4
Carub.0001s0351 Capsella rubella HOM05D003940 ORTHO05D004461 5.6e-08 61.2 86 51.2
Eucgr.H03139 Eucalyptus grandis HOM05D003940 ORTHO05D004461 5.6e-08 61.2 98 43.9
Thhalv10009178m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 5.6e-08 61.2 87 49.4
SGA_v2.0_scaffold101G29832 Striga asiatica HOM05D003940 ORTHO05D004461 5.6e-08 61.2 99 39.4
TWI53G1738 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 5.6e-08 61.2 97 43.3
Migut.N00250 Erythranthe guttata HOM05D003940 ORTHO05D004461 7.3e-08 60.8 90 44.4
MELO3C022975.2 Cucumis melo HOM05D003940 ORTHO05D004461 9.5e-08 60.5 131 39.7
FAN26G1611 Fragaria x ananassa HOM05D003940 ORTHO05D004461 9.5e-08 60.5 84 41.7
A10p02740 Brassica napus HOM05D003940 ORTHO05D004461 1.2e-07 60.1 85 45.9
BraA10t42542Z Brassica rapa HOM05D003940 ORTHO05D004461 1.2e-07 60.1 85 45.9
C05p02510 Brassica napus HOM05D003940 ORTHO05D004461 1.6e-07 59.7 85 48.2
Lsat_1_v5_gn_3_122140 Lactuca sativa HOM05D003940 ORTHO05D004461 1.6e-07 59.7 96 43.8
SHI00703 Sapria himalayana HOM05D003940 ORTHO05D004461 1.6e-07 59.7 107 37.4
BolC5t29030H Brassica oleracea HOM05D003940 ORTHO05D004461 2.1e-07 59.3 85 48.2
SalBow2G1766 Salvia bowleyana HOM05D003940 ORTHO05D004461 2.1e-07 59.3 103 39.8
TWI53G1893 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 2.1e-07 59.3 97 43.3
CAN.G738.11 Capsicum annuum HOM05D003940 ORTHO05D004461 2.8e-07 58.9 103 38.8
Ca_05393_v3 Cicer arietinum L. HOM05D003940 ORTHO05D004461 3.6e-07 58.5 91 41.8
ECA233G6082 Erigeron canadensis HOM05D003940 ORTHO05D004461 3.6e-07 58.5 90 40.0
HanXRQChr03g0092241 Helianthus annuus HOM05D003940 ORTHO05D004461 3.6e-07 58.5 87 46.0
Sp1g03140 Schrenkiella parvula HOM05D003940 ORTHO05D004461 3.6e-07 58.5 85 48.2
TAR365G0320 Trochodendron aralioides HOM05D003940 ORTHO05D004461 3.6e-07 58.5 110 39.1
CiPaw.02G114800 Carya illinoinensis HOM05D003940 ORTHO05D004461 4.7e-07 58.2 104 40.4
TAR636G1753 Trochodendron aralioides HOM05D003940 ORTHO05D004461 6.2e-07 57.8 107 40.2
Aqoxy5G00265 Aquilegia oxysepala HOM05D003940 ORTHO05D004461 8.0e-07 57.4 115 38.3
BcaC07g42173 Brassica carinata HOM05D003940 ORTHO05D004461 8.0e-07 57.4 88 46.6
BcaC07g42193 Brassica carinata HOM05D003940 ORTHO05D004461 8.0e-07 57.4 88 46.6
CsaV3_2G012950 Cucumis sativus L. HOM05D003940 ORTHO05D004461 1.1e-06 57.0 108 41.7
CARHR003650 Cardamine hirsuta HOM05D003940 ORTHO05D004461 1.4e-06 56.6 96 42.7
AL1G13930 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 1.8e-06 56.2 95 45.3
AT1G04330 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 1.8e-06 56.2 95 45.3
HanXRQChr13g0425481 Helianthus annuus HOM05D003940 ORTHO05D004461 1.8e-06 56.2 88 44.3
Sc13g0005150 Simmondsia chinensis HOM05D003940 ORTHO05D004461 5.2e-06 54.7 92 39.1
CAN.G793.6 Capsicum annuum HOM05D003940 ORTHO05D004461 6.8e-06 54.3 108 38.0
CsaV3_3G012380 Cucumis sativus L. HOM05D000244 ORTHO05D000179 6.8e-06 54.3 102 44.1


User provided reference genes

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