Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp7g11810 Schrenkiella parvula HOM05D005927 ORTHO05D006952 4.0e-60 234.6 119 100.0
BcaB02g08639 Brassica carinata HOM05D005927 ORTHO05D006952 3.2e-49 198.4 119 84.9
BcaC02g09370 Brassica carinata HOM05D005927 ORTHO05D006952 3.2e-49 198.4 119 84.9
C04p41800 Brassica napus HOM05D005927 ORTHO05D006952 3.2e-49 198.4 119 84.9
BolC4t25761H Brassica oleracea HOM05D005927 ORTHO05D006952 3.2e-49 198.4 119 84.9
A04p08120 Brassica napus HOM05D005927 ORTHO05D006952 3.5e-48 194.9 120 84.2
BraA04t16501Z Brassica rapa HOM05D005927 ORTHO05D006952 3.5e-48 194.9 120 84.2
AL7G42420 Arabidopsis lyrata HOM05D005927 ORTHO05D006952 6.9e-44 180.6 119 79.8
Carub.0007s2841 Capsella rubella HOM05D005927 ORTHO05D006952 1.2e-43 179.9 119 79.8
AT4G14010 Arabidopsis thaliana HOM05D005927 ORTHO05D006952 1.3e-42 176.4 120 79.2
Thhalv10026595m.g Eutrema salsugineum HOM05D005927 ORTHO05D006952 1.8e-36 156.0 116 71.6
CARHR220010 Cardamine hirsuta HOM05D005927 ORTHO05D006952 2.5e-30 135.6 119 64.7
Aa31LG9G3330 Aethionema arabicum HOM05D005927 ORTHO05D006952 5.0e-26 121.3 100 64.0
CARHR220020 Cardamine hirsuta HOM05D005927 ORTHO05D006952 7.2e-25 117.5 116 58.6
THA.LOC104804793 Tarenaya hassleriana HOM05D005927 ORTHO05D006952 2.3e-23 112.5 117 59.0
Potri.017G059800 Populus trichocarpa HOM05D005927 ORTHO05D006952 8.2e-21 104.0 119 47.9
Manes.05G201886 Manihot esculenta HOM05D005927 ORTHO05D006952 9.0e-20 100.5 90 58.9
arahy.Tifrunner.gnm1.ann1.N45PRE Arachis hypogaea HOM05D005927 ORTHO05D006952 4.5e-19 98.2 108 50.9
Sabra17G0053700 Salix brachista HOM05D005927 ORTHO05D006952 5.9e-19 97.8 91 56.0
Aa31LG8G10360 Aethionema arabicum HOM05D005927 ORTHO05D006952 1.3e-18 96.7 117 52.1
FAN12G2699 Fragaria x ananassa HOM05D005927 ORTHO05D006952 1.7e-18 96.3 102 55.9
VMungo0251G3792 Vigna mungo HOM05D005927 ORTHO05D006952 1.7e-18 96.3 128 49.2
TPR.G11873 Trifolium pratense HOM05D005927 ORTHO05D006952 2.2e-18 95.9 113 50.4
RcHm_v2.0_Chr4g0413341 Rosa chinensis HOM05D005927 ORTHO05D006952 2.9e-18 95.5 108 50.9
FvH4_4g13190 Fragaria vesca HOM05D005927 ORTHO05D006952 3.8e-18 95.1 102 54.9
Solyc09g092235.1 Solanum lycopersicum HOM05D005927 ORTHO05D006952 8.5e-18 94.0 111 45.0
Lj4g0008619 Lotus japonicus HOM05D005927 ORTHO05D006952 1.1e-17 93.6 115 49.6
Glyma.05G151400 Glycine max HOM05D005927 ORTHO05D006952 1.4e-17 93.2 125 45.6
MD04G1018100 Malus domestica HOM05D005927 ORTHO05D006952 1.9e-17 92.8 118 47.5
Potri.001G321300 Populus trichocarpa HOM05D005927 ORTHO05D006952 1.9e-17 92.8 119 45.4
Glyma.08G108200 Glycine max HOM05D005927 ORTHO05D006952 4.2e-17 91.7 126 45.2
Sopen09g035160 Solanum pennellii HOM05D005927 ORTHO05D006952 4.2e-17 91.7 111 44.1
Thecc.04G193700 Theobroma cacao HOM05D005927 ORTHO05D006952 4.2e-17 91.7 110 50.9
arahy.Tifrunner.gnm1.ann1.DI9ALX Arachis hypogaea HOM05D005927 ORTHO05D006952 5.5e-17 91.3 108 50.0
Hma1.2p1_2624F.1_g325620 Hydrangea macrophylla HOM05D005927 ORTHO05D006952 7.2e-17 90.9 107 47.7
FAN17G1175 Fragaria x ananassa HOM05D005927 ORTHO05D006952 1.2e-16 90.1 87 58.6
Hma1.2p1_0349F.1_g131980 Hydrangea macrophylla HOM05D005927 ORTHO05D006952 1.2e-16 90.1 107 47.7
CiPaw.01G115600 Carya illinoinensis HOM05D005927 ORTHO05D006952 1.6e-16 89.7 125 46.4
Ca_17999_v3 Cicer arietinum L. HOM05D000324 ORTHO05D004875 1.6e-16 89.7 89 53.9
FAN07G0035 Fragaria x ananassa HOM05D005927 ORTHO05D006952 1.6e-16 89.7 108 50.0
CsaV3_3G015740 Cucumis sativus L. HOM05D005927 ORTHO05D006952 2.1e-16 89.4 93 50.5
Phvul.003G051400 Phaseolus vulgaris HOM05D005927 ORTHO05D006952 2.1e-16 89.4 118 44.9
Sed0010469 Sechium edule HOM05D005927 ORTHO05D006952 2.1e-16 89.4 89 58.4
arahy.Tifrunner.gnm1.ann1.6R0Q3T Arachis hypogaea HOM05D005927 ORTHO05D006952 2.7e-16 89.0 93 52.7
Psat7g076040 Pisum sativum HOM05D005927 ORTHO05D006952 2.7e-16 89.0 105 51.4
Aqoxy2G03917 Aquilegia oxysepala HOM05D005927 ORTHO05D006952 4.6e-16 88.2 113 46.9
Gohir.D10G137100 Gossypium hirsutum HOM05D005927 ORTHO05D006952 6.1e-16 87.8 111 48.6
Gorai.011G152200 Gossypium raimondii HOM05D005927 ORTHO05D006952 6.1e-16 87.8 111 48.6
Nn1g08157 Nelumbo nucifera HOM05D005927 ORTHO05D006952 6.1e-16 87.8 114 48.2
Haze_11664 Corylus avellana HOM05D005927 ORTHO05D006952 7.9e-16 87.4 118 45.8
MELO3C006773.2 Cucumis melo HOM05D005927 ORTHO05D006952 1.4e-15 86.7 110 45.5
Hma1.2p1_1201F.1_g266720 Hydrangea macrophylla HOM05D005927 ORTHO05D006952 1.4e-15 86.7 115 45.2
A03p43360 Brassica napus HOM05D005927 ORTHO05D006952 1.8e-15 86.3 96 51.0
QL06p026881 Quercus lobata HOM05D005927 ORTHO05D006952 2.3e-15 85.9 109 46.8
MSTRG.14058 Avicennia marina HOM05D005927 ORTHO05D006952 3.0e-15 85.5 134 44.0
COL.COLO4_05438 Corchorus olitorius HOM05D005927 ORTHO05D006952 3.9e-15 85.1 87 55.2
Gohir.A10G129100 Gossypium hirsutum HOM05D005927 ORTHO05D006952 3.9e-15 85.1 111 47.7
CSS0025530 Camellia sinensis var. sinensis HOM05D005927 ORTHO05D006952 5.1e-15 84.7 125 44.0
Cfa008638 Carpinus fangiana HOM05D005927 ORTHO05D006952 6.7e-15 84.3 89 52.8
Hma1.2p1_0349F.1_g132010 Hydrangea macrophylla HOM05D005927 ORTHO05D006952 6.7e-15 84.3 105 42.9
Hma1.2p1_2624F.1_g325626 Hydrangea macrophylla HOM05D005927 ORTHO05D006952 6.7e-15 84.3 105 42.9
Medtr8g083150 Medicago truncatula HOM05D005927 ORTHO05D006952 6.7e-15 84.3 120 41.7
Rhsim09G0061200 Rhododendron simsii HOM05D005927 ORTHO05D006952 6.7e-15 84.3 116 43.1
Sp3g21500 Schrenkiella parvula HOM05D005927 ORTHO05D006952 6.7e-15 84.3 101 48.5
Ah.13g077890 Amaranthus hybridus HOM05D005927 ORTHO05D006952 8.8e-15 84.0 93 51.6
CSS0030768 Camellia sinensis var. sinensis HOM05D005927 ORTHO05D006952 1.5e-14 83.2 87 51.7
PGSC0003DMG400026439 Solanum tuberosum HOM05D005927 ORTHO05D006952 1.5e-14 83.2 67 56.7
Cpa.g.sc157.40 Carica papaya HOM05D005927 ORTHO05D006952 3.3e-14 82.0 94 51.1
CSS0000209 Camellia sinensis var. sinensis HOM05D005927 ORTHO05D006952 4.3e-14 81.6 110 41.8
CSS0010844 Camellia sinensis var. sinensis HOM05D005927 ORTHO05D006952 5.7e-14 81.3 110 40.9
CSS0015614 Camellia sinensis var. sinensis HOM05D005927 ORTHO05D006952 7.4e-14 80.9 110 40.9
Migut.N00426 Erythranthe guttata HOM05D005927 ORTHO05D006952 7.4e-14 80.9 123 41.5
Thecc.04G193600 Theobroma cacao HOM05D005927 ORTHO05D006952 9.7e-14 80.5 81 54.3
TWI09G0897 Tripterygium wilfordii HOM05D005927 ORTHO05D006952 9.7e-14 80.5 99 48.5
CSS0027848 Camellia sinensis var. sinensis HOM05D005927 ORTHO05D006952 2.2e-13 79.3 87 51.7
Eucgr.H02655 Eucalyptus grandis HOM05D005927 ORTHO05D006952 2.2e-13 79.3 121 42.1
CSS0029764 Camellia sinensis var. sinensis HOM05D005927 ORTHO05D006952 2.8e-13 79.0 87 51.7
SalBow3G2584 Salvia bowleyana HOM05D005927 ORTHO05D006952 3.7e-13 78.6 124 40.3
EL10Ac3g07444 Beta vulgaris HOM05D005927 ORTHO05D006952 4.8e-13 78.2 87 51.7
CANSAT78G2028 Cannabis sativa HOM05D005927 ORTHO05D006952 8.2e-13 77.4 85 52.9
Nitab4.5_0019370g0010 Nicotiana tabacum HOM05D005927 ORTHO05D006952 8.2e-13 77.4 61 60.7
Prupe.1G167100 Prunus persica HOM05D005927 ORTHO05D006952 8.2e-13 77.4 114 43.9
PGR083G0422 Punica granatum HOM05D005927 ORTHO05D006952 8.2e-13 77.4 123 41.5
PGR083G1024 Punica granatum HOM05D005927 ORTHO05D006952 8.2e-13 77.4 123 41.5
CSS0021083 Camellia sinensis var. sinensis HOM05D005927 ORTHO05D006952 1.1e-12 77.0 85 48.2
CiPaw.02G064100 Carya illinoinensis HOM05D005927 ORTHO05D006952 1.1e-12 77.0 118 41.5
COL.COLO4_05437 Corchorus olitorius HOM05D005927 ORTHO05D006952 1.4e-12 76.6 116 43.1
Ciclev10006252m.g Citrus clementina HOM05D005927 ORTHO05D006952 3.1e-12 75.5 121 39.7
BraA03t13474Z Brassica rapa HOM05D005927 ORTHO05D006952 5.3e-12 74.7 64 59.4
AUR62020874 Chenopodium quinoa HOM05D005927 ORTHO05D006952 6.9e-12 74.3 73 56.2
DCAR_026663 Daucus carota HOM05D005927 ORTHO05D006952 6.9e-12 74.3 68 60.3
CiPaw.02G063500 Carya illinoinensis HOM05D005927 ORTHO05D006952 9.1e-12 73.9 118 41.5
Cfa010561 Carpinus fangiana HOM05D003411 ORTHO05D003914 1.2e-11 73.6 82 51.2
Lsat_1_v5_gn_2_47681 Lactuca sativa HOM05D005927 ORTHO05D006952 1.5e-11 73.2 64 57.8
PGR083G0017 Punica granatum HOM05D005927 ORTHO05D006952 1.5e-11 73.2 112 44.6
CSS0031533 Camellia sinensis var. sinensis HOM05D005927 ORTHO05D006952 2.6e-11 72.4 67 53.7
CSS0047969 Camellia sinensis var. sinensis HOM05D005927 ORTHO05D006952 2.6e-11 72.4 87 48.3
AUR62018545 Chenopodium quinoa HOM05D005927 ORTHO05D006952 2.6e-11 72.4 73 54.8
DCAR_001205 Daucus carota HOM05D001053 ORTHO05D008021 2.6e-11 72.4 64 53.1
BcaB03g14615 Brassica carinata HOM05D005927 ORTHO05D006952 3.4e-11 72.0 68 55.9
Duzib151G0391 Durio zibethinus HOM05D005927 ORTHO05D006952 4.5e-11 71.6 80 47.5
Duzib268G0459 Durio zibethinus HOM05D005927 ORTHO05D006952 7.7e-11 70.9 94 44.7
Nn1g08158 Nelumbo nucifera HOM05D005927 ORTHO05D006952 7.7e-11 70.9 94 46.8
Ciclev10006262m.g Citrus clementina HOM05D005927 ORTHO05D006952 1.0e-10 70.5 109 36.7
Lalb_Chr25g0289221 Lupinus albus HOM05D005927 ORTHO05D006952 1.0e-10 70.5 113 39.8
SGA_v2.0_scaffold7G04055 Striga asiatica HOM05D005927 ORTHO05D006952 1.7e-10 69.7 88 43.2
Atru.chr4.1553 Acer truncatum HOM05D005927 ORTHO05D006952 3.8e-10 68.6 81 45.7
CiPaw.01G115500 Carya illinoinensis HOM05D005927 ORTHO05D006952 5.0e-10 68.2 82 45.1
CSS0046414 Camellia sinensis var. sinensis HOM05D005927 ORTHO05D006952 8.5e-10 67.4 122 41.0
ECA238G2825 Erigeron canadensis HOM05D005927 ORTHO05D006952 1.4e-09 66.6 105 41.9
Manes.05G202960 Manihot esculenta HOM05D005927 ORTHO05D006952 4.2e-09 65.1 124 35.5
Potri.001G321500 Populus trichocarpa HOM05D005927 ORTHO05D006952 5.5e-09 64.7 127 34.6
Sed0016502 Sechium edule HOM05D005927 ORTHO05D006952 5.5e-09 64.7 90 43.3
Potri.017G059900 Populus trichocarpa HOM05D005927 ORTHO05D006952 7.2e-09 64.3 95 42.1
Oeu056432.1 Olea europaea HOM05D005927 ORTHO05D006952 9.4e-09 63.9 119 36.1
CSS0014727 Camellia sinensis var. sinensis HOM05D005927 ORTHO05D006952 1.6e-08 63.2 50 52.0
AT4G15800 Arabidopsis thaliana HOM05D000668 ORTHO05D000516 1.4e-07 60.1 118 39.8
Sopen01g029860 Solanum pennellii HOM05D000668 ORTHO05D000516 5.1e-07 58.2 94 42.6
Gohir.A09G207300 Gossypium hirsutum HOM05D005927 ORTHO05D006952 6.7e-07 57.8 84 44.0
Solyc01g067900.3 Solanum lycopersicum HOM05D000668 ORTHO05D000516 6.7e-07 57.8 89 42.7
unitig_21.g20554 Utricularia gibba HOM05D005927 ORTHO05D006952 6.7e-07 57.8 84 38.1
Ah.06g189750 Amaranthus hybridus HOM05D000668 ORTHO05D000516 8.8e-07 57.4 93 35.5
Aqoxy5G00719 Aquilegia oxysepala HOM05D000668 ORTHO05D000516 8.8e-07 57.4 123 36.6
AT1G02900 Arabidopsis thaliana HOM05D000668 ORTHO05D000516 8.8e-07 57.4 126 34.1
Eucgr.B01916 Eucalyptus grandis HOM05D000668 ORTHO05D000516 1.1e-06 57.0 121 38.0
Carub.0007s2586 Capsella rubella HOM05D000668 ORTHO05D000516 1.5e-06 56.6 119 39.5
CARHR002250 Cardamine hirsuta HOM05D000668 ORTHO05D000516 2.0e-06 56.2 129 35.7
CAN.G185.13 Capsicum annuum HOM05D000668 ORTHO05D000516 2.6e-06 55.8 131 33.6
Gohir.D11G120300 Gossypium hirsutum HOM05D000668 ORTHO05D000516 4.4e-06 55.1 121 37.2
Gorai.007G129000 Gossypium raimondii HOM05D000668 ORTHO05D000516 4.4e-06 55.1 121 37.2
TWI14G0362 Tripterygium wilfordii HOM05D000668 ORTHO05D000516 4.4e-06 55.1 129 37.2
TPR.G9615 Trifolium pratense HOM05D000668 ORTHO05D000516 5.7e-06 54.7 94 40.4
Carub.0001s0203 Capsella rubella HOM05D000668 ORTHO05D000516 7.4e-06 54.3 82 42.7
Carub.0033s0004 Capsella rubella HOM05D000668 ORTHO05D000516 9.7e-06 53.9 108 37.0


User provided reference genes

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