Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp7g10660 Schrenkiella parvula HOM05D005884 ORTHO05D007282 6.1e-104 380.9 208 100.0
Thhalv10026263m.g Eutrema salsugineum HOM05D005884 ORTHO05D007282 3.4e-70 268.9 209 77.5
BcaB03g16138 Brassica carinata HOM05D005884 ORTHO05D007282 8.6e-66 254.2 203 76.4
BolC4t25837H Brassica oleracea HOM05D005884 ORTHO05D007282 3.6e-64 248.8 204 73.0
BcaC02g09439 Brassica carinata HOM05D005884 ORTHO05D007282 1.8e-63 246.5 204 72.5
A04p08870 Brassica napus HOM05D005884 ORTHO05D007282 8.9e-63 244.2 202 72.8
BraA04t16580Z Brassica rapa HOM05D005884 ORTHO05D007282 2.0e-62 243.0 202 73.3
C04p42740 Brassica napus HOM05D005884 ORTHO05D007282 1.6e-59 233.4 204 70.1
Carub.0007s2947 Capsella rubella HOM05D005884 ORTHO05D007282 1.2e-54 217.2 206 67.5
AL9U10790 Arabidopsis lyrata HOM05D005884 ORTHO05D007282 7.5e-46 188.0 202 61.4
Aa31LG9G4610 Aethionema arabicum HOM05D005884 ORTHO05D007282 2.5e-41 172.9 207 56.0
AT4G13200 Arabidopsis thaliana HOM05D005884 ORTHO05D007282 5.2e-39 165.2 202 57.4
CARHR218670 Cardamine hirsuta HOM05D005884 ORTHO05D007282 3.4e-38 162.5 209 55.0
CiPaw.04G106200 Carya illinoinensis HOM05D005884 ORTHO05D007282 2.2e-29 133.3 176 49.4
TAR362G0919 Trochodendron aralioides HOM05D005884 ORTHO05D007282 7.1e-28 128.3 162 51.9
CiPaw.03G150900 Carya illinoinensis HOM05D005884 ORTHO05D007282 2.1e-27 126.7 197 47.7
CSS0032503 Camellia sinensis var. sinensis HOM05D005884 ORTHO05D007282 3.5e-27 125.9 152 53.3
Nn1g07794 Nelumbo nucifera HOM05D005884 ORTHO05D007282 7.8e-27 124.8 149 51.7
CSS0024949 Camellia sinensis var. sinensis HOM05D005884 ORTHO05D007282 1.0e-26 124.4 152 52.6
Thecc.01G227600 Theobroma cacao HOM05D005884 ORTHO05D007282 1.3e-26 124.0 187 47.1
Duzib133G0404 Durio zibethinus HOM05D005884 ORTHO05D007282 1.7e-26 123.6 132 56.8
ECA248G2691 Erigeron canadensis HOM05D005884 ORTHO05D007282 2.3e-26 123.2 184 48.9
Nitab4.5_0003790g0020 Nicotiana tabacum HOM05D005884 ORTHO05D007282 2.3e-26 123.2 133 53.4
Oeu015899.1 Olea europaea HOM05D005884 ORTHO05D007282 3.0e-26 122.9 124 60.5
Actinidia23729 Actinidia chinensis HOM05D005884 ORTHO05D007282 3.9e-26 122.5 128 60.2
TWI36G0226 Tripterygium wilfordii HOM05D005884 ORTHO05D007282 5.1e-26 122.1 146 53.4
Glyma.03G080200 Glycine max HOM05D005884 ORTHO05D007282 8.7e-26 121.3 183 47.0
Dinv04661 Davidia involucrata HOM05D005884 ORTHO05D007282 2.5e-25 119.8 140 55.7
Hund18350 Selenicereus undatus HOM05D005884 ORTHO05D007282 4.3e-25 119.0 183 45.4
Gorai.001G186100 Gossypium raimondii HOM05D005884 ORTHO05D007282 7.3e-25 118.2 176 47.2
THA.LOC104808781 Tarenaya hassleriana HOM05D005884 ORTHO05D007282 7.3e-25 118.2 182 48.9
Gohir.D07G162500 Gossypium hirsutum HOM05D005884 ORTHO05D007282 9.6e-25 117.9 176 47.2
Lj3g0000124 Lotus japonicus HOM05D005884 ORTHO05D007282 9.6e-25 117.9 186 44.1
Manes.13G044700 Manihot esculenta HOM05D005884 ORTHO05D007282 1.2e-24 117.5 140 51.4
Ciclev10022209m.g Citrus clementina HOM05D005884 ORTHO05D007282 1.6e-24 117.1 191 45.5
HanXRQChr01g0014641 Helianthus annuus HOM05D005884 ORTHO05D007282 1.6e-24 117.1 167 50.3
Cc03_g12390 Coffea canephora HOM05D005884 ORTHO05D007282 2.1e-24 116.7 126 54.8
Phvul.010G014200 Phaseolus vulgaris HOM05D005884 ORTHO05D007282 2.1e-24 116.7 178 44.4
PGR044G0377 Punica granatum HOM05D005884 ORTHO05D007282 2.1e-24 116.7 161 46.6
QL02p021928 Quercus lobata HOM05D005884 ORTHO05D007282 2.1e-24 116.7 147 51.7
DCAR_018555 Daucus carota HOM05D005884 ORTHO05D007282 3.6e-24 115.9 136 55.1
Medtr4g017880 Medicago truncatula HOM05D005884 ORTHO05D007282 3.6e-24 115.9 124 54.0
Cpa.g.sc8.170 Carica papaya HOM05D005884 ORTHO05D007282 4.7e-24 115.5 145 52.4
Psat7g243200 Pisum sativum HOM05D005884 ORTHO05D007282 4.7e-24 115.5 142 53.5
Gohir.A07G156200 Gossypium hirsutum HOM05D005884 ORTHO05D007282 6.2e-24 115.2 161 49.1
Nitab4.5_0000866g0050 Nicotiana tabacum HOM05D005884 ORTHO05D007282 6.2e-24 115.2 166 44.0
Eucgr.H00802 Eucalyptus grandis HOM05D005884 ORTHO05D007282 8.1e-24 114.8 203 45.3
Peaxi162Scf00107g01314 Petunia axillaris HOM05D005884 ORTHO05D007282 8.1e-24 114.8 132 55.3
vmacro14762 Vaccinium macrocarpon HOM05D005884 ORTHO05D007282 8.1e-24 114.8 150 48.0
Glyma.18G149300 Glycine max HOM05D005884 ORTHO05D007282 1.1e-23 114.4 159 50.3
Lj2A1133T33 Lonicera japonica HOM05D005884 ORTHO05D007282 1.1e-23 114.4 117 59.0
FAN15G1595 Fragaria x ananassa HOM05D005884 ORTHO05D007282 1.4e-23 114.0 175 46.9
Hma1.2p1_0351F.1_g132860 Hydrangea macrophylla HOM05D005884 ORTHO05D007282 2.4e-23 113.2 160 48.1
MD05G1177500 Malus domestica HOM05D005884 ORTHO05D007282 2.4e-23 113.2 142 50.7
Dinv19212 Davidia involucrata HOM05D005884 ORTHO05D007282 4.0e-23 112.5 180 44.4
THA.LOC104804605 Tarenaya hassleriana HOM05D005884 ORTHO05D007282 4.0e-23 112.5 193 45.1
MSTRG.18383 Avicennia marina HOM05D005884 ORTHO05D007282 5.3e-23 112.1 126 57.1
Lsat_1_v5_gn_5_179880 Lactuca sativa HOM05D005884 ORTHO05D007282 5.3e-23 112.1 171 46.2
Sc05g0002430 Simmondsia chinensis HOM05D005884 ORTHO05D007282 5.3e-23 112.1 129 55.0
TWI18G1166 Tripterygium wilfordii HOM05D005884 ORTHO05D007282 5.3e-23 112.1 216 39.8
MBI07_g23671_MAGBIO Magnolia biondii HOM05D005884 ORTHO05D007282 6.9e-23 111.7 110 56.4
Rhsim01G0257200 Rhododendron simsii HOM05D005884 ORTHO05D007282 6.9e-23 111.7 182 47.3
CAN.G122.4 Capsicum annuum HOM05D005884 ORTHO05D007282 9.0e-23 111.3 75 74.7
GSVIVG01028583001 Vitis vinifera HOM05D005884 ORTHO05D007282 9.0e-23 111.3 137 52.6
FAN15G1921 Fragaria x ananassa HOM05D005884 ORTHO05D007282 1.5e-22 110.5 208 40.9
Sopen09g024260 Solanum pennellii HOM05D005884 ORTHO05D007282 1.5e-22 110.5 115 55.7
COL.COLO4_10043 Corchorus olitorius HOM05D003123 ORTHO05D007282 2.0e-22 110.2 111 56.8
Duzib138G0327 Durio zibethinus HOM05D005884 ORTHO05D007282 4.4e-22 109.0 178 41.0
FAN27G0062 Fragaria x ananassa HOM05D005884 ORTHO05D007282 4.4e-22 109.0 175 46.3
PGSC0003DMG400028009 Solanum tuberosum HOM05D005884 ORTHO05D007282 4.4e-22 109.0 176 44.3
Manes.12G041200 Manihot esculenta HOM05D005884 ORTHO05D007282 5.8e-22 108.6 115 53.0
AUR62031836 Chenopodium quinoa HOM05D005884 ORTHO05D007282 7.6e-22 108.2 127 52.8
ClCG09G009110 Citrullus lanatus HOM05D005884 ORTHO05D007282 7.6e-22 108.2 164 44.5
FAN24G3425 Fragaria x ananassa HOM05D005884 ORTHO05D007282 7.6e-22 108.2 176 44.9
PSO063G4085 Papaver somniferum HOM05D005884 ORTHO05D007282 7.6e-22 108.2 135 50.4
Potri.002G241000 Populus trichocarpa HOM05D005884 ORTHO05D007282 7.6e-22 108.2 130 50.0
Solyc09g061440.4 Solanum lycopersicum HOM05D005884 ORTHO05D007282 9.9e-22 107.8 147 46.9
Ca_20129_v3 Cicer arietinum L. HOM05D005884 ORTHO05D007282 1.3e-21 107.5 123 53.7
Lalb_Chr07g0194041 Lupinus albus HOM05D005884 ORTHO05D007282 1.7e-21 107.1 135 50.4
TAR633G1722 Trochodendron aralioides HOM05D005884 ORTHO05D007282 1.7e-21 107.1 192 41.1
Ah.08g213990 Amaranthus hybridus HOM05D005884 ORTHO05D007282 2.2e-21 106.7 133 51.1
FvH4_2g19250 Fragaria vesca HOM05D005884 ORTHO05D007282 2.2e-21 106.7 176 44.3
RcHm_v2.0_Chr6g0285061 Rosa chinensis HOM05D005884 ORTHO05D007282 2.2e-21 106.7 149 47.7
PSO017G2163 Papaver somniferum HOM05D005884 ORTHO05D007282 2.9e-21 106.3 115 54.8
SGA_v2.0_scaffold8G04650 Striga asiatica HOM05D005884 ORTHO05D007282 2.9e-21 106.3 132 50.0
HPP92_022492 Vanilla planifolia HOM05D005884 ORTHO05D007282 2.9e-21 106.3 109 55.0
MELO3C012764.2 Cucumis melo HOM05D005884 ORTHO05D007282 4.9e-21 105.5 168 42.9
Migut.N02263 Erythranthe guttata HOM05D005884 ORTHO05D007282 4.9e-21 105.5 76 72.4
EL10Ac7g17785 Beta vulgaris HOM05D005884 ORTHO05D007282 6.4e-21 105.1 78 69.2
CsaV3_7G025830 Cucumis sativus L. HOM05D005884 ORTHO05D007282 6.4e-21 105.1 161 45.3
arahy.Tifrunner.gnm1.ann1.Q3DN0U Arachis hypogaea HOM05D005884 ORTHO05D007282 1.9e-20 103.6 202 42.6
Migut.D00525 Erythranthe guttata HOM05D005884 ORTHO05D007282 2.4e-20 103.2 200 41.0
SalBow4G1286 Salvia bowleyana HOM05D005884 ORTHO05D007282 2.4e-20 103.2 171 43.9
Sed0001531 Sechium edule HOM05D005884 ORTHO05D007282 2.4e-20 103.2 175 40.0
Aqoxy2G03761 Aquilegia oxysepala HOM05D005884 ORTHO05D007282 3.2e-20 102.8 209 39.2
arahy.Tifrunner.gnm1.ann1.C60K2U Arachis hypogaea HOM05D005884 ORTHO05D007282 4.2e-20 102.4 155 47.7
CANSAT01G0442 Cannabis sativa HOM05D005884 ORTHO05D007282 5.4e-20 102.1 163 44.8
AUR62008873 Chenopodium quinoa HOM05D005884 ORTHO05D007282 5.4e-20 102.1 143 47.6
Prupe.8G204400 Prunus persica HOM05D005884 ORTHO05D007282 7.1e-20 101.7 137 48.9
TPR.G8219 Trifolium pratense HOM05D005884 ORTHO05D007282 9.3e-20 101.3 169 41.4
Gorai.009G365800 Gossypium raimondii HOM05D005884 ORTHO05D007282 1.2e-19 100.9 116 53.4
Sabra02G0183600 Salix brachista HOM05D005884 ORTHO05D007282 1.2e-19 100.9 181 40.9
Cfa002560 Carpinus fangiana HOM05D005884 ORTHO05D007282 3.5e-19 99.4 97 58.8
Haze_24787 Corylus avellana HOM05D005884 ORTHO05D007282 3.5e-19 99.4 97 58.8
unitig_22.g6325 Utricularia gibba HOM05D005884 ORTHO05D007282 1.7e-18 97.1 137 46.0
Zm00001eb426500 Zea mays HOM05D005884 ORTHO05D007282 2.5e-17 93.2 101 52.5
ATR0736G055 Amborella trichopoda HOM05D005884 ORTHO05D007282 5.6e-17 92.0 131 42.7
MBI10_g44186_MAGBIO Magnolia biondii HOM05D005884 ORTHO05D007282 7.3e-17 91.7 111 46.8
Os04g0513000 Oryza sativa ssp. japonica HOM05D005884 ORTHO05D007282 2.1e-16 90.1 115 50.4
MSTRG.17548 Avicennia marina HOM05D005884 ORTHO05D007282 2.8e-16 89.7 93 60.2
VMungo0331G1358 Vigna mungo HOM05D005884 ORTHO05D007282 2.8e-16 89.7 97 54.6
CDE02G3372 Ceratophyllum demersum HOM05D005884 ORTHO05D007282 1.4e-15 87.4 114 48.2
Gohir.A09G200610 Gossypium hirsutum HOM05D005884 ORTHO05D007282 4.0e-15 85.9 63 69.8
MBI06_g14323_MAGBIO Magnolia biondii HOM05D005884 ORTHO05D007282 9.0e-15 84.7 118 44.9
MD10G1165900 Malus domestica HOM05D005884 ORTHO05D007282 9.0e-15 84.7 116 50.0
Mapoly0028s0026 Marchantia polymorpha HOM05D005884 ORTHO05D007282 9.0e-15 84.7 120 41.7
SEGI_25444 Sequoiadendron giganteum HOM05D005884 ORTHO05D007282 3.4e-14 82.8 110 46.4
TAR194G0001 Trochodendron aralioides HOM05D005884 ORTHO05D004773 2.9e-13 79.7 137 43.1
SalBow2G0198 Salvia bowleyana HOM05D005884 ORTHO05D007282 1.4e-12 77.4 104 45.2
Sed0008993 Sechium edule HOM05D005884 ORTHO05D007282 2.7e-11 73.2 112 45.5
Pp3c5_25810 Physcomitrium patens HOM05D005884 ORTHO05D007282 5.1e-10 68.9 118 42.4
Atru.chr3.3178 Acer truncatum HOM05D005884 ORTHO05D007282 6.7e-10 68.6 65 53.8
AagrBONN_evm.TU.Sc2ySwM_228.3174 Anthoceros agrestis HOM05D005884 ORTHO05D007282 6.7e-10 68.6 54 61.1
MCO02G464 Micromonas commoda HOM05D005884 ORTHO05D007282 4.8e-08 62.4 67 49.3
Gohir.A03G143925 Gossypium hirsutum HOM05D005884 ORTHO05D007282 9.0e-07 58.2 87 47.1
Gorai.001G128300 Gossypium raimondii HOM05D005884 ORTHO05D007282 9.0e-07 58.2 87 47.1
Gorai.001G116800 Gossypium raimondii HOM05D005884 ORTHO05D007282 1.2e-06 57.8 85 48.2
Gorai.002G226800 Gossypium raimondii HOM05D005884 ORTHO05D007282 1.2e-06 57.8 85 48.2


User provided reference genes

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