Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp7g10210 Schrenkiella parvula HOM05D004056 ORTHO05D004894 2.2e-131 472.2 233 100.0
BcaB04g17724 Brassica carinata HOM05D004056 ORTHO05D004894 3.3e-98 362.1 219 84.5
C08p08780 Brassica napus HOM05D004056 ORTHO05D004894 8.9e-96 354.0 214 84.6
BcaC07g37403 Brassica carinata HOM05D004056 ORTHO05D004894 2.0e-95 352.8 214 84.1
BolC8t47725H Brassica oleracea HOM05D004056 ORTHO05D004894 2.0e-95 352.8 214 84.1
BraA08t32730Z Brassica rapa HOM05D004056 ORTHO05D004894 1.9e-90 336.3 214 82.2
A08p07180 Brassica napus HOM05D004056 ORTHO05D004894 5.6e-90 334.7 204 83.8
Thhalv10026242m.g Eutrema salsugineum HOM05D004056 ORTHO05D004894 8.9e-88 327.4 213 79.3
CARHR218370 Cardamine hirsuta HOM05D004056 ORTHO05D004894 2.1e-84 316.2 219 77.2
AL9U11310 Arabidopsis lyrata HOM05D004056 ORTHO05D004894 2.5e-74 282.7 229 68.1
THA.LOC104804624 Tarenaya hassleriana HOM05D004056 ORTHO05D004894 1.1e-69 267.3 216 68.1
Aa31LG9G5020 Aethionema arabicum HOM05D004056 ORTHO05D004894 2.7e-60 236.1 212 61.8
Carub.0007s2973 Capsella rubella HOM05D004056 ORTHO05D004894 7.9e-60 234.6 164 76.2
Potri.002G246100 Populus trichocarpa HOM05D004056 ORTHO05D004894 1.8e-51 206.8 212 55.7
TWI18G1219 Tripterygium wilfordii HOM05D004056 ORTHO05D004894 3.0e-51 206.1 209 56.5
Prupe.8G198700 Prunus persica HOM05D004056 ORTHO05D004894 1.1e-50 204.1 228 53.9
COL.COLO4_34102 Corchorus olitorius HOM05D004056 ORTHO05D004894 2.5e-50 203.0 207 56.5
Thecc.01G219700 Theobroma cacao HOM05D004056 ORTHO05D004894 3.3e-50 202.6 211 55.5
TWI36G0821 Tripterygium wilfordii HOM05D004056 ORTHO05D004894 3.3e-50 202.6 209 55.0
Duzib138G1417 Durio zibethinus HOM05D004056 ORTHO05D004894 4.3e-50 202.2 210 55.2
Gohir.D07G205300 Gossypium hirsutum HOM05D004056 ORTHO05D004894 4.3e-50 202.2 209 56.0
Gorai.001G231300 Gossypium raimondii HOM05D004056 ORTHO05D004894 4.3e-50 202.2 209 56.0
Cfa004161 Carpinus fangiana HOM05D004056 ORTHO05D004894 5.6e-50 201.8 237 52.7
Gorai.001G188300 Gossypium raimondii HOM05D004056 ORTHO05D004894 9.6e-50 201.1 215 55.3
Atru.chr6.1427 Acer truncatum HOM05D004056 ORTHO05D004894 1.3e-49 200.7 208 56.2
AT4G13040 Arabidopsis thaliana HOM05D004056 ORTHO05D004894 1.3e-49 200.7 117 83.8
Cpa.g.sc21.106 Carica papaya HOM05D004056 ORTHO05D004894 1.3e-49 200.7 246 52.0
Gohir.D11G145800 Gossypium hirsutum HOM05D004056 ORTHO05D004894 1.6e-49 200.3 217 54.4
Manes.12G047500 Manihot esculenta HOM05D004056 ORTHO05D004894 2.8e-49 199.5 232 51.7
TPR.G11183 Trifolium pratense HOM05D004056 ORTHO05D004894 2.8e-49 199.5 226 54.4
Gohir.D07G164400 Gossypium hirsutum HOM05D004056 ORTHO05D004894 3.7e-49 199.1 215 54.4
Gohir.A07G198800 Gossypium hirsutum HOM05D004056 ORTHO05D004894 6.2e-49 198.4 209 55.5
Sabra02G0187400 Salix brachista HOM05D004056 ORTHO05D004894 6.2e-49 198.4 212 53.3
Gorai.007G156300 Gossypium raimondii HOM05D004056 ORTHO05D004894 1.1e-48 197.6 236 50.8
Duzib211G0551 Durio zibethinus HOM05D004056 ORTHO05D004894 4.0e-48 195.7 216 53.7
Manes.13G049600 Manihot esculenta HOM05D004056 ORTHO05D004894 5.3e-48 195.3 236 49.6
Actinidia39428 Actinidia chinensis HOM05D004056 ORTHO05D004894 6.9e-48 194.9 208 55.3
MD10G1159600 Malus domestica HOM05D004056 ORTHO05D004894 6.9e-48 194.9 237 50.2
Duzib133G0422 Durio zibethinus HOM05D004056 ORTHO05D004894 9.0e-48 194.5 214 53.7
DCAR_012671 Daucus carota HOM05D004056 ORTHO05D004894 1.2e-47 194.1 210 53.3
Lj3g0018087 Lotus japonicus HOM05D004056 ORTHO05D004894 1.2e-47 194.1 206 55.8
Nn1g07984 Nelumbo nucifera HOM05D004056 ORTHO05D004894 1.2e-47 194.1 207 54.1
Lj1A89T71 Lonicera japonica HOM05D004056 ORTHO05D004894 1.5e-47 193.7 211 55.0
VMungo1383G1286 Vigna mungo HOM05D004056 ORTHO05D004894 1.5e-47 193.7 207 55.1
Ciclev10021891m.g Citrus clementina HOM05D004056 ORTHO05D004894 2.6e-47 193.0 214 53.7
CsaV3_7G026330 Cucumis sativus L. HOM05D004056 ORTHO05D004894 3.4e-47 192.6 205 53.7
Gohir.D07G097700 Gossypium hirsutum HOM05D004056 ORTHO05D004894 4.5e-47 192.2 214 53.3
CiPaw.01G050800 Carya illinoinensis HOM05D004056 ORTHO05D004894 5.8e-47 191.8 211 54.5
Gohir.A11G139600 Gossypium hirsutum HOM05D004056 ORTHO05D004894 5.8e-47 191.8 217 53.0
Haze_15250 Corylus avellana HOM05D004056 ORTHO05D004894 1.0e-46 191.0 300 43.0
CANSAT01G2574 Cannabis sativa HOM05D004056 ORTHO05D004894 1.3e-46 190.7 223 50.2
Gorai.001G105100 Gossypium raimondii HOM05D004056 ORTHO05D004894 1.7e-46 190.3 210 53.8
Gohir.A07G093100 Gossypium hirsutum HOM05D004056 ORTHO05D004894 2.2e-46 189.9 210 53.8
Actinidia30050 Actinidia chinensis HOM05D004056 ORTHO05D004894 2.9e-46 189.5 207 53.6
Rhsim01G0253300 Rhododendron simsii HOM05D004056 ORTHO05D004894 2.9e-46 189.5 217 51.2
FvH4_2g18520 Fragaria vesca HOM05D004056 ORTHO05D004894 3.8e-46 189.1 236 47.9
MBI07_g18993_MAGBIO Magnolia biondii HOM05D004056 ORTHO05D004894 4.9e-46 188.7 207 53.1
MSTRG.20969 Avicennia marina HOM05D004056 ORTHO05D004894 6.5e-46 188.3 207 51.7
Lalb_Chr19g0125861 Lupinus albus HOM05D004056 ORTHO05D004894 1.1e-45 187.6 207 54.1
Nitab4.5_0001161g0130 Nicotiana tabacum HOM05D004056 ORTHO05D004894 1.1e-45 187.6 206 51.9
Medtr8g012655 Medicago truncatula HOM05D004056 ORTHO05D004894 1.4e-45 187.2 228 50.4
arahy.Tifrunner.gnm1.ann1.8LB9ZD Arachis hypogaea HOM05D004056 ORTHO05D004894 1.9e-45 186.8 202 53.5
CAN.G5.40 Capsicum annuum HOM05D004056 ORTHO05D004894 1.9e-45 186.8 206 51.0
CiPaw.02G023900 Carya illinoinensis HOM05D004056 ORTHO05D004894 1.9e-45 186.8 207 52.2
Phvul.008G131500 Phaseolus vulgaris HOM05D004056 ORTHO05D004894 1.9e-45 186.8 209 54.1
RcHm_v2.0_Chr6g0284081 Rosa chinensis HOM05D004056 ORTHO05D004894 1.9e-45 186.8 234 49.6
MD05G1171400 Malus domestica HOM05D004056 ORTHO05D004894 3.2e-45 186.0 212 52.4
Rhsim13G0047900 Rhododendron simsii HOM05D004056 ORTHO05D004894 4.2e-45 185.7 206 52.4
CDE09G0677 Ceratophyllum demersum HOM05D004056 ORTHO05D004894 5.5e-45 185.3 206 53.4
Gohir.A07G160800 Gossypium hirsutum HOM05D004056 ORTHO05D004894 5.5e-45 185.3 131 71.8
Hma1.2p1_0226F.1_g095370 Hydrangea macrophylla HOM05D004056 ORTHO05D004894 7.1e-45 184.9 208 52.9
SalBow6G2821 Salvia bowleyana HOM05D004056 ORTHO05D004894 9.3e-45 184.5 206 51.9
SalBow6G5583 Salvia bowleyana HOM05D004056 ORTHO05D004894 9.3e-45 184.5 206 51.9
PGSC0003DMG400017485 Solanum tuberosum HOM05D004056 ORTHO05D004894 9.3e-45 184.5 206 51.0
Eucgr.K02136 Eucalyptus grandis HOM05D004056 ORTHO05D004894 1.2e-44 184.1 239 49.4
HPP92_024244 Vanilla planifolia HOM05D004056 ORTHO05D004894 1.2e-44 184.1 207 53.1
VMungo0331G1907 Vigna mungo HOM05D004056 ORTHO05D004894 1.2e-44 184.1 227 50.7
Nitab4.5_0000045g0550 Nicotiana tabacum HOM05D004056 ORTHO05D004894 1.6e-44 183.7 204 51.5
Solyc09g059510.3 Solanum lycopersicum HOM05D004056 ORTHO05D004894 3.5e-44 182.6 206 50.5
Oeu051533.1 Olea europaea HOM05D004056 ORTHO05D004894 4.6e-44 182.2 209 54.5
CDE02G4431 Ceratophyllum demersum HOM05D004056 ORTHO05D004894 6.0e-44 181.8 206 51.9
Migut.D02503 Erythranthe guttata HOM05D004056 ORTHO05D004894 7.9e-44 181.4 223 49.3
Ca_23224_v3 Cicer arietinum L. HOM05D004056 ORTHO05D004894 1.0e-43 181.0 205 53.2
vmacro14736 Vaccinium macrocarpon HOM05D004056 ORTHO05D004894 1.0e-43 181.0 208 51.4
MSTRG.18836 Avicennia marina HOM05D004056 ORTHO05D004894 1.3e-43 180.6 213 50.2
Sc17g0002100 Simmondsia chinensis HOM05D004056 ORTHO05D004894 2.3e-43 179.9 239 47.7
Dinv19168 Davidia involucrata HOM05D004056 ORTHO05D004894 3.9e-43 179.1 205 52.7
vmacro02784 Vaccinium macrocarpon HOM05D004056 ORTHO05D004894 3.9e-43 179.1 241 47.7
arahy.Tifrunner.gnm1.ann1.2MPX2Y Arachis hypogaea HOM05D004056 ORTHO05D004894 5.1e-43 178.7 238 47.9
TAR636G0170 Trochodendron aralioides HOM05D004056 ORTHO05D004894 5.1e-43 178.7 207 51.7
Psat3g149240 Pisum sativum HOM05D004056 ORTHO05D004894 8.7e-43 177.9 215 52.6
QL09p051117 Quercus lobata HOM05D004056 ORTHO05D004894 1.1e-42 177.6 130 70.0
HPP92_006215 Vanilla planifolia HOM05D004056 ORTHO05D004894 1.5e-42 177.2 210 51.0
Medtr7g055857 Medicago truncatula HOM05D004056 ORTHO05D004894 1.9e-42 176.8 214 51.4
TAR633G1317 Trochodendron aralioides HOM05D004056 ORTHO05D004894 5.7e-42 175.3 126 71.4
THA.LOC104808796 Tarenaya hassleriana HOM05D004056 ORTHO05D004894 7.4e-42 174.9 204 52.5
CsaV3_3G030040 Cucumis sativus L. HOM05D004056 ORTHO05D004894 9.7e-42 174.5 206 52.4
Migut.N00633 Erythranthe guttata HOM05D004056 ORTHO05D004894 9.7e-42 174.5 209 50.2
MELO3C022718.2 Cucumis melo HOM05D004056 ORTHO05D004894 1.3e-41 174.1 209 51.2
Os02g0499000 Oryza sativa ssp. japonica HOM05D004056 ORTHO05D004894 1.3e-41 174.1 205 49.3
EL10Ac7g17907 Beta vulgaris HOM05D004056 ORTHO05D004894 1.6e-41 173.7 214 49.5
ATR0561G205 Amborella trichopoda HOM05D004056 ORTHO05D004894 2.2e-41 173.3 208 51.4
Aqoxy5G00024 Aquilegia oxysepala HOM05D004056 ORTHO05D004894 2.2e-41 173.3 229 48.5
ClCG07G002100 Citrullus lanatus HOM05D004056 ORTHO05D004894 2.8e-41 172.9 212 50.9
MSTRG.12776 Avicennia marina HOM05D004056 ORTHO05D004894 6.3e-41 171.8 206 51.5
C08p08770 Brassica napus HOM05D004056 ORTHO05D004894 1.1e-40 171.0 89 92.1
BolC8t47724H Brassica oleracea HOM05D004056 ORTHO05D004894 1.1e-40 171.0 89 92.1
Zm00001eb241420 Zea mays HOM05D004056 ORTHO05D004894 1.1e-40 171.0 205 49.8
TAR362G0687 Trochodendron aralioides HOM05D004056 ORTHO05D004894 1.8e-40 170.2 207 50.2
Peaxi162Scf00068g00224 Petunia axillaris HOM05D004056 ORTHO05D004894 2.4e-40 169.9 103 77.7
Dinv12647 Davidia involucrata HOM05D004056 ORTHO05D004894 5.3e-40 168.7 103 78.6
GSVIVG01003250001 Vitis vinifera HOM05D004056 ORTHO05D004894 5.3e-40 168.7 106 75.5
Sopen09g022670 Solanum pennellii HOM05D004056 ORTHO05D004894 6.9e-40 168.3 218 46.8
FAN24G0472 Fragaria x ananassa HOM05D004056 ORTHO05D008391 9.0e-40 167.9 173 53.8
FAN27G1039 Fragaria x ananassa HOM05D004056 ORTHO05D004894 9.0e-40 167.9 153 58.8
unitig_26.g9438 Utricularia gibba HOM05D004056 ORTHO05D004894 9.0e-40 167.9 223 46.6
FAN15G2777 Fragaria x ananassa HOM05D004056 ORTHO05D008391 1.2e-39 167.5 160 56.2
Sed0007046 Sechium edule HOM05D004056 ORTHO05D004894 1.5e-39 167.2 209 49.3
DCAR_018636 Daucus carota HOM05D004056 ORTHO05D004894 2.0e-39 166.8 206 50.0
Dinv00576 Davidia involucrata HOM05D004056 ORTHO05D004894 2.6e-39 166.4 120 69.2
Oeu057860.1 Olea europaea HOM05D004056 ORTHO05D004894 2.6e-39 166.4 103 76.7
AUR62001134 Chenopodium quinoa HOM05D004056 ORTHO05D004894 5.9e-39 165.2 212 48.1
SGA_v2.0_scaffold18G08335 Striga asiatica HOM05D004056 ORTHO05D004894 7.6e-39 164.9 205 46.3
TAR365G1100 Trochodendron aralioides HOM05D004056 ORTHO05D004894 7.6e-39 164.9 148 61.5
Glyma.08G348300 Glycine max HOM05D004056 ORTHO05D004894 1.3e-38 164.1 207 46.4
Lsat_1_v5_gn_8_89300 Lactuca sativa HOM05D004056 ORTHO05D004894 1.3e-38 164.1 108 74.1
Lj1g0006098 Lotus japonicus HOM05D004056 ORTHO05D004894 2.2e-38 163.3 215 47.9
Cc01_g16690 Coffea canephora HOM05D004056 ORTHO05D004894 3.8e-38 162.5 207 47.3
unitig_736.g22344 Utricularia gibba HOM05D004056 ORTHO05D004894 5.0e-38 162.2 154 57.1
Ca_03473_v3 Cicer arietinum L. HOM05D004056 ORTHO05D004894 6.5e-38 161.8 220 48.2
ClCG09G008620 Citrullus lanatus HOM05D004056 ORTHO05D004894 1.4e-37 160.6 138 60.9
HanXRQChr04g0108001 Helianthus annuus HOM05D004056 ORTHO05D004894 1.4e-37 160.6 129 63.6
MD10G1039600 Malus domestica HOM05D001916 ORTHO05D004894 3.2e-37 159.5 133 60.2
Sed0002122 Sechium edule HOM05D004056 ORTHO05D004894 3.2e-37 159.5 106 73.6
Sed0026975 Sechium edule HOM05D004056 ORTHO05D004894 3.2e-37 159.5 106 73.6
unitig_899.g15016 Utricularia gibba HOM05D004056 ORTHO05D004894 4.2e-37 159.1 214 44.4
MELO3C028860.2 Cucumis melo HOM05D004056 ORTHO05D004894 5.5e-37 158.7 257 42.0
TPR.G6483 Trifolium pratense HOM05D004056 ORTHO05D004894 5.5e-37 158.7 214 47.2
Lsat_1_v5_gn_5_180841 Lactuca sativa HOM05D004056 ORTHO05D004894 9.3e-37 157.9 225 46.2
HanXRQChr01g0015301 Helianthus annuus HOM05D004056 ORTHO05D004894 2.7e-36 156.4 207 46.9
PGR044G2021 Punica granatum HOM05D004056 ORTHO05D004894 3.6e-36 156.0 205 49.3
ECA248G0601 Erigeron canadensis HOM05D004056 ORTHO05D004894 6.1e-36 155.2 103 71.8
AUR62016545 Chenopodium quinoa HOM05D004056 ORTHO05D004894 1.0e-35 154.5 207 48.3
SMO172G0031 Selaginella moellendorffii HOM05D004056 ORTHO05D004894 2.3e-35 153.3 110 62.7
Pp3c6_9830 Physcomitrium patens HOM05D004056 ORTHO05D004894 3.9e-35 152.5 105 69.5
Hund05580 Selenicereus undatus HOM05D004056 ORTHO05D004894 1.5e-34 150.6 211 45.0
unitig_749.g13591 Utricularia gibba HOM05D004056 ORTHO05D004894 3.3e-34 149.4 122 61.5
unitig_699.g19750 Utricularia gibba HOM05D004056 ORTHO05D004894 9.7e-34 147.9 102 68.6
PSO063G1373 Papaver somniferum HOM05D004056 ORTHO05D004894 2.8e-33 146.4 142 57.0
Pp3c5_19550 Physcomitrium patens HOM05D004056 ORTHO05D004894 8.2e-33 144.8 105 67.6
Glyma.18G159900 Glycine max HOM05D004056 ORTHO05D004894 4.1e-32 142.5 129 58.1
Hund18433 Selenicereus undatus HOM05D004056 ORTHO05D004894 9.1e-32 141.4 190 45.3
Ah.08g214620 Amaranthus hybridus HOM05D004056 ORTHO05D004894 4.5e-31 139.0 205 42.0
PSO017G4055 Papaver somniferum HOM05D004056 ORTHO05D004894 2.9e-30 136.3 168 51.2
ECA236G1380 Erigeron canadensis HOM05D004056 ORTHO05D004894 1.8e-27 127.1 85 70.6
SMO361G0763 Selaginella moellendorffii HOM05D004056 ORTHO05D004894 5.7e-26 122.1 112 55.4
Psat4g203800 Pisum sativum HOM05D004056 ORTHO05D004894 4.8e-25 119.0 172 45.9
HanXRQChr08g0235681 Helianthus annuus HOM05D004056 ORTHO05D004894 1.3e-22 110.9 79 64.6
CSS0045016 Camellia sinensis var. sinensis HOM05D000011 ORTHO05D000018 3.2e-21 106.3 103 56.3
SGA_v2.0_scaffold6G03510 Striga asiatica HOM05D004056 ORTHO05D004894 9.4e-21 104.8 111 51.4
CBR_g38383 Chara braunii HOM05D004056 ORTHO05D004894 4.5e-15 85.9 90 45.6
Pp3c4_8660 Physcomitrium patens HOM05D004056 ORTHO05D004504 1.4e-11 74.3 80 50.0
CSS0004822 Camellia sinensis var. sinensis HOM05D004056 ORTHO05D004894 7.5e-10 68.6 47 66.0
Pp3c13_22780 Physcomitrium patens HOM05D004056 ORTHO05D004504 2.4e-08 63.5 110 35.5
HPP92_024205 Vanilla planifolia HOM05D004056 ORTHO05D004894 4.5e-07 59.3 207 30.0
RcHm_v2.0_Chr3g0472871 Rosa chinensis HOM05D004056 ORTHO05D004894 1.3e-06 57.8 40 65.0


User provided reference genes

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