Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp7g07030 Schrenkiella parvula HOM05D004832 ORTHO05D005821 1.0e-85 320.1 166 100.0
C01p49120 Brassica napus HOM05D004832 ORTHO05D005821 2.8e-67 258.8 165 78.8
BolC1t04876H Brassica oleracea HOM05D004832 ORTHO05D005821 6.2e-67 257.7 165 78.2
A01p38670 Brassica napus HOM05D004832 ORTHO05D005821 8.1e-67 257.3 165 77.6
BraA01t03917Z Brassica rapa HOM05D004832 ORTHO05D005821 8.1e-67 257.3 165 77.6
BcaC09g48497 Brassica carinata HOM05D004832 ORTHO05D005821 1.2e-65 253.4 165 77.6
BcaB07g33539 Brassica carinata HOM05D004832 ORTHO05D005821 2.6e-65 252.3 166 79.5
AL5G21320 Arabidopsis lyrata HOM05D004832 ORTHO05D005821 5.8e-65 251.1 165 75.2
Carub.0003s1502 Capsella rubella HOM05D004832 ORTHO05D005821 2.9e-64 248.8 163 76.1
AL3G27790 Arabidopsis lyrata HOM05D004832 ORTHO05D005821 2.4e-63 245.7 163 75.5
Carub.0008s1260 Capsella rubella HOM05D004832 ORTHO05D005821 3.2e-63 245.4 163 74.8
Thhalv10021656m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 5.6e-60 234.6 166 73.5
Thhalv10023724m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 9.6e-60 233.8 166 72.9
BcaC01g05853 Brassica carinata HOM05D004832 ORTHO05D005821 1.1e-58 230.3 150 77.3
Aa31LG8G2560 Aethionema arabicum HOM05D004832 ORTHO05D005821 4.0e-58 228.4 157 73.9
Thhalv10009807m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 2.0e-57 226.1 166 69.9
Thhalv10009904m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 8.4e-56 220.7 166 68.7
AT3G15351 Arabidopsis thaliana HOM05D004832 ORTHO05D005821 1.1e-55 220.3 138 78.3
C03p21760 Brassica napus HOM05D004832 ORTHO05D005821 9.3e-55 217.2 137 79.6
CiPaw.13G030400 Carya illinoinensis HOM05D004832 ORTHO05D005821 6.4e-48 194.5 165 56.4
Phvul.010G055900 Phaseolus vulgaris HOM05D004832 ORTHO05D005821 8.4e-48 194.1 165 57.0
ECA234G0521 Erigeron canadensis HOM05D004832 ORTHO05D005821 3.2e-47 192.2 160 59.4
Glyma.16G097600 Glycine max HOM05D004832 ORTHO05D005821 5.4e-47 191.4 165 56.4
THA.LOC104813152 Tarenaya hassleriana HOM05D004832 ORTHO05D005821 7.1e-47 191.0 139 66.9
Hund06868 Selenicereus undatus HOM05D004832 ORTHO05D005821 9.3e-47 190.7 155 59.4
FAN01G1609 Fragaria x ananassa HOM05D004832 ORTHO05D005821 1.2e-46 190.3 165 55.2
DCAR_029781 Daucus carota HOM05D004832 ORTHO05D005821 2.1e-46 189.5 159 56.6
FvH4_7g10630 Fragaria vesca HOM05D004832 ORTHO05D005821 2.1e-46 189.5 165 55.2
FAN06G0284 Fragaria x ananassa HOM05D004832 ORTHO05D005821 2.1e-46 189.5 165 55.2
FAN06G1644 Fragaria x ananassa HOM05D004832 ORTHO05D005821 2.1e-46 189.5 165 55.2
RcHm_v2.0_Chr1g0348571 Rosa chinensis HOM05D004832 ORTHO05D005821 2.1e-46 189.5 165 55.2
GSVIVG01018202001 Vitis vinifera HOM05D004832 ORTHO05D005821 3.5e-46 188.7 160 56.2
BcaB04g20935 Brassica carinata HOM05D002732 ORTHO05D006371 4.6e-46 188.3 122 77.0
Lsat_1_v5_gn_4_43780 Lactuca sativa HOM05D004832 ORTHO05D005821 6.0e-46 188.0 159 57.2
Manes.01G270800 Manihot esculenta HOM05D004832 ORTHO05D005821 7.8e-46 187.6 165 53.3
CANSAT64G0775 Cannabis sativa HOM05D004832 ORTHO05D005821 3.0e-45 185.7 161 56.5
Lj3g0007809 Lotus japonicus HOM05D004832 ORTHO05D005821 3.0e-45 185.7 164 54.9
Gohir.A11G077700 Gossypium hirsutum HOM05D004832 ORTHO05D005821 5.1e-45 184.9 166 53.6
HanXRQChr16g0519281 Helianthus annuus HOM05D004832 ORTHO05D005821 8.7e-45 184.1 160 56.9
ClCG05G000300 Citrullus lanatus HOM05D004832 ORTHO05D005821 1.1e-44 183.7 160 53.1
MELO3C005967.2 Cucumis melo HOM05D004832 ORTHO05D005821 1.1e-44 183.7 160 52.5
Sp1g41650 Schrenkiella parvula HOM05D004832 ORTHO05D005821 1.1e-44 183.7 118 78.8
Sed0016485 Sechium edule HOM05D004832 ORTHO05D005821 1.1e-44 183.7 159 53.5
Gorai.007G087800 Gossypium raimondii HOM05D004832 ORTHO05D005821 1.5e-44 183.3 165 52.7
arahy.Tifrunner.gnm1.ann1.YIL91U Arachis hypogaea HOM05D004832 ORTHO05D005821 1.9e-44 183.0 163 54.0
Eucgr.D02506 Eucalyptus grandis HOM05D004832 ORTHO05D005821 1.9e-44 183.0 164 52.4
Gohir.D11G082100 Gossypium hirsutum HOM05D004832 ORTHO05D005821 2.5e-44 182.6 166 53.0
Sabra02G0110600 Salix brachista HOM05D004832 ORTHO05D005821 2.5e-44 182.6 156 55.1
CSS0038442 Camellia sinensis var. sinensis HOM05D004832 ORTHO05D005821 3.3e-44 182.2 165 53.3
COL.COLO4_12459 Corchorus olitorius HOM05D004832 ORTHO05D005821 3.3e-44 182.2 165 54.5
Migut.B01571 Erythranthe guttata HOM05D004832 ORTHO05D005821 3.3e-44 182.2 164 54.9
COL.COLO4_11958 Corchorus olitorius HOM05D004832 ORTHO05D005821 4.3e-44 181.8 165 54.5
CsaV3_3G007460 Cucumis sativus L. HOM05D001289 ORTHO05D002298 4.3e-44 181.8 160 51.9
Thecc.01G386800 Theobroma cacao HOM05D004832 ORTHO05D005821 4.3e-44 181.8 165 53.3
arahy.Tifrunner.gnm1.ann1.W023QS Arachis hypogaea HOM05D004832 ORTHO05D005821 5.6e-44 181.4 164 53.0
Lalb_Chr07g0195651 Lupinus albus HOM05D004832 ORTHO05D005821 5.6e-44 181.4 159 55.3
Prupe.2G134800 Prunus persica HOM05D004832 ORTHO05D005821 5.6e-44 181.4 157 55.4
Sc08g0005120 Simmondsia chinensis HOM05D004832 ORTHO05D005821 5.6e-44 181.4 154 57.1
Medtr4g093680 Medicago truncatula HOM05D004832 ORTHO05D005821 7.3e-44 181.0 165 53.3
Ciclev10022588m.g Citrus clementina HOM05D004832 ORTHO05D005821 9.6e-44 180.6 164 54.3
arahy.Tifrunner.gnm1.ann1.32ME5N Arachis hypogaea HOM05D004832 ORTHO05D005821 1.6e-43 179.9 164 52.4
arahy.Tifrunner.gnm1.ann1.88IY7S Arachis hypogaea HOM05D004832 ORTHO05D005821 1.6e-43 179.9 164 52.4
arahy.Tifrunner.gnm1.ann1.A6AVFI Arachis hypogaea HOM05D004832 ORTHO05D005821 1.6e-43 179.9 164 52.4
Lj9A562G31 Lonicera japonica HOM05D004832 ORTHO05D005821 1.6e-43 179.9 166 53.0
Atru.chr5.207 Acer truncatum HOM05D004832 ORTHO05D005821 2.8e-43 179.1 165 52.7
Potri.002G142000 Populus trichocarpa HOM05D004832 ORTHO05D005821 2.8e-43 179.1 156 54.5
Potri.002G142100 Populus trichocarpa HOM05D004832 ORTHO05D005821 2.8e-43 179.1 152 55.3
VMungo0331G1454 Vigna mungo HOM05D004832 ORTHO05D005821 2.8e-43 179.1 137 61.3
MBI04_g11708_MAGBIO Magnolia biondii HOM05D004832 ORTHO05D005821 3.6e-43 178.7 164 51.8
TPR.G2894 Trifolium pratense HOM05D004832 ORTHO05D005821 4.8e-43 178.3 159 53.5
Dinv43651 Davidia involucrata HOM05D004832 ORTHO05D005821 6.2e-43 177.9 160 51.9
Ca_18388_v3 Cicer arietinum L. HOM05D004832 ORTHO05D005821 1.1e-42 177.2 154 53.9
MSTRG.17149 Avicennia marina HOM05D004832 ORTHO05D005821 1.4e-42 176.8 165 53.9
Lj5g0022701 Lotus japonicus HOM05D004832 ORTHO05D005821 1.8e-42 176.4 165 53.3
Nitab4.5_0000706g0140 Nicotiana tabacum HOM05D004832 ORTHO05D005821 1.8e-42 176.4 165 50.3
HanXRQChr05g0138431 Helianthus annuus HOM05D004832 ORTHO05D005821 2.4e-42 176.0 160 54.4
Thhalv10009921m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 3.1e-42 175.6 166 60.8
Peaxi162Scf00377g00611 Petunia axillaris HOM05D004832 ORTHO05D005821 3.1e-42 175.6 165 51.5
Cfa011129 Carpinus fangiana HOM05D004832 ORTHO05D005821 5.3e-42 174.9 160 51.2
MD07G1111400 Malus domestica HOM05D004832 ORTHO05D005821 6.9e-42 174.5 165 51.5
MD10G1232800 Malus domestica HOM05D004832 ORTHO05D005821 6.9e-42 174.5 165 51.5
Solyc01g090720.3 Solanum lycopersicum HOM05D004832 ORTHO05D005821 6.9e-42 174.5 165 50.3
Nitab4.5_0001823g0010 Nicotiana tabacum HOM05D004832 ORTHO05D005821 9.0e-42 174.1 165 50.3
Psat2g165520 Pisum sativum HOM05D004832 ORTHO05D005821 9.0e-42 174.1 160 53.8
Duzib138G0601 Durio zibethinus HOM05D004832 ORTHO05D005821 1.5e-41 173.3 139 59.0
PSO063G5716 Papaver somniferum HOM05D004832 ORTHO05D005821 1.5e-41 173.3 163 50.9
Oeu061515.1 Olea europaea HOM05D004832 ORTHO05D005821 2.0e-41 172.9 160 51.2
Aqoxy7G02831 Aquilegia oxysepala HOM05D004832 ORTHO05D005821 2.6e-41 172.6 164 49.4
FAN03G2909 Fragaria x ananassa HOM05D004832 ORTHO05D005821 2.6e-41 172.6 189 47.1
Zm00001eb272690 Zea mays HOM05D004832 ORTHO05D005821 2.6e-41 172.6 163 50.3
CAN.G899.18 Capsicum annuum HOM05D004832 ORTHO05D005821 4.5e-41 171.8 165 49.7
Cc02_g24530 Coffea canephora HOM05D004832 ORTHO05D005821 4.5e-41 171.8 159 52.2
SGA_v2.0_scaffold52G19196 Striga asiatica HOM05D004832 ORTHO05D005821 4.5e-41 171.8 159 52.8
SGA_v2.0_scaffold153G36948 Striga asiatica HOM05D004832 ORTHO05D005821 7.6e-41 171.0 159 52.8
Hma1.2p1_0341F.1_g130370 Hydrangea macrophylla HOM05D004832 ORTHO05D005821 9.9e-41 170.6 157 52.9
arahy.Tifrunner.gnm1.ann1.84RPTF Arachis hypogaea HOM05D005553 ORTHO05D006866 1.7e-40 169.9 154 53.2
Glyma.07G109700 Glycine max HOM05D004832 ORTHO05D005821 1.7e-40 169.9 147 56.5
PSO017G2958 Papaver somniferum HOM05D004832 ORTHO05D005821 2.9e-40 169.1 158 51.3
ATR0317G035 Amborella trichopoda HOM05D004832 ORTHO05D005821 3.8e-40 168.7 159 50.9
PGR119G1038 Punica granatum HOM05D004832 ORTHO05D005821 3.8e-40 168.7 156 51.9
Sopen01g036450 Solanum pennellii HOM05D004832 ORTHO05D005821 3.8e-40 168.7 165 47.3
vmacro00550 Vaccinium macrocarpon HOM05D004832 ORTHO05D005821 3.8e-40 168.7 186 47.3
HPP92_023799 Vanilla planifolia HOM05D004832 ORTHO05D005821 6.4e-40 167.9 159 49.7
Ah.03g133100 Amaranthus hybridus HOM05D004832 ORTHO05D005821 3.2e-39 165.6 137 57.7
Nn6g33924 Nelumbo nucifera HOM05D004832 ORTHO05D005821 4.2e-39 165.2 152 51.3
BcaC08g43270 Brassica carinata HOM05D004832 ORTHO05D005821 1.2e-38 163.7 166 59.6
Haze_02734 Corylus avellana HOM05D004832 ORTHO05D005821 1.6e-38 163.3 182 45.6
Rhsim07G0033000 Rhododendron simsii HOM05D004832 ORTHO05D005821 3.5e-38 162.2 193 45.1
CDE06G2810 Ceratophyllum demersum HOM05D004832 ORTHO05D005821 8.7e-37 157.5 136 53.7
Glyma.02G101600 Glycine max HOM05D004832 ORTHO05D005821 1.5e-36 156.8 124 58.9
SEGI_17839 Sequoiadendron giganteum HOM05D004832 ORTHO05D005821 1.9e-36 156.4 163 47.9
Os07g0485600 Oryza sativa ssp. japonica HOM05D004832 ORTHO05D005821 2.5e-36 156.0 125 56.0
AUR62024291 Chenopodium quinoa HOM05D004832 ORTHO05D005821 3.3e-36 155.6 131 57.3
AUR62035275 Chenopodium quinoa HOM05D004832 ORTHO05D005821 6.2e-35 151.4 128 56.2
DCAR_022632 Daucus carota HOM05D004832 ORTHO05D005821 1.3e-32 143.7 118 60.2
TAR629G1420 Trochodendron aralioides HOM05D004832 ORTHO05D005821 2.5e-31 139.4 123 53.7
MBI03_g13774_MAGBIO Magnolia biondii HOM05D004832 ORTHO05D005821 5.5e-31 138.3 172 43.0
CSS0042819 Camellia sinensis var. sinensis HOM05D004832 ORTHO05D005821 3.5e-30 135.6 117 56.4
arahy.Tifrunner.gnm1.ann1.W1G7Z9 Arachis hypogaea HOM05D004832 ORTHO05D005821 7.9e-30 134.4 111 57.7
QL04p035586 Quercus lobata HOM05D004832 ORTHO05D005821 1.0e-29 134.0 116 56.9
C06p06180 Brassica napus HOM05D004832 ORTHO05D005821 5.1e-29 131.7 76 82.9
BolC6t35729H Brassica oleracea HOM05D004832 ORTHO05D005821 5.1e-29 131.7 76 82.9
Thhalv10009561m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 1.6e-27 126.7 99 67.7
QL04p020302 Quercus lobata HOM05D004832 ORTHO05D005821 3.7e-27 125.6 116 54.3
Psat5g158760 Pisum sativum HOM05D004832 ORTHO05D005821 6.2e-27 124.8 127 50.4
SMO141G0160 Selaginella moellendorffii HOM05D004832 ORTHO05D005821 1.1e-26 124.0 139 47.5
QL04p046167 Quercus lobata HOM05D004832 ORTHO05D005821 2.0e-25 119.8 116 52.6
Pp3c10_24560 Physcomitrium patens HOM05D004832 ORTHO05D005821 4.5e-25 118.6 158 41.1
QL04p046254 Quercus lobata HOM05D003594 ORTHO05D004268 5.8e-25 118.2 88 62.5
Thhalv10002901m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 7.6e-25 117.9 164 45.7
Mapoly0002s0300 Marchantia polymorpha HOM05D004832 ORTHO05D005821 2.2e-24 116.3 164 38.4
CARHR215320 Cardamine hirsuta HOM05D004832 ORTHO05D005821 5.0e-24 115.2 71 77.5
HPP92_023759 Vanilla planifolia HOM05D004832 ORTHO05D005821 5.0e-24 115.2 120 49.2
SEGI_40532 Sequoiadendron giganteum HOM05D004832 ORTHO05D005821 1.1e-23 114.0 120 48.3
AagrBONN_evm.TU.Sc2ySwM_368.2344 Anthoceros agrestis HOM05D004832 ORTHO05D005821 2.5e-23 112.8 152 40.8
HanXRQChr13g0390291 Helianthus annuus HOM05D004832 ORTHO05D005821 1.8e-21 106.7 91 50.5
CARHR090340 Cardamine hirsuta HOM05D004832 ORTHO05D005821 1.1e-20 104.0 79 69.6
AUR62005450 Chenopodium quinoa HOM05D004832 ORTHO05D005821 4.8e-19 98.6 128 44.5
Atru.chr5.209 Acer truncatum HOM05D004832 ORTHO05D005821 5.3e-18 95.1 72 56.9
HPP92_023760 Vanilla planifolia HOM05D004832 ORTHO05D005821 9.0e-18 94.4 100 47.0
Psat6g056000 Pisum sativum HOM05D004832 ORTHO05D005821 7.7e-17 91.3 104 49.0
Glyma.03G117400 Glycine max HOM05D004832 ORTHO05D005821 1.3e-16 90.5 71 54.9
EL10Ac6g13797 Beta vulgaris HOM05D004832 ORTHO05D005821 5.5e-15 85.1 84 54.8
Potri.014G057550 Populus trichocarpa HOM05D004832 ORTHO05D005821 1.8e-13 80.1 137 35.8
QL12p027350 Quercus lobata HOM05D004832 ORTHO05D005821 1.3e-11 73.9 52 55.8
Os06g0535333 Oryza sativa ssp. japonica HOM05D004832 ORTHO05D005821 1.2e-09 67.4 59 52.5
Nn1g00967 Nelumbo nucifera HOM05D004832 ORTHO05D005821 2.7e-06 56.2 56 39.3
Sabra14G0041800 Salix brachista HOM05D004832 ORTHO05D005821 2.7e-06 56.2 64 50.0
arahy.Tifrunner.gnm1.ann1.T8JHIW Arachis hypogaea HOM05D004832 ORTHO05D005821 4.7e-06 55.5 52 46.2


User provided reference genes

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