Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp7g06840 Schrenkiella parvula HOM05D006386 ORTHO05D007575 2.6e-130 468.8 243 100.0
BcaB06g26945 Brassica carinata HOM05D006386 ORTHO05D007575 6.0e-95 351.3 243 76.5
Thhalv10003465m.g Eutrema salsugineum HOM05D006386 ORTHO05D007575 9.3e-88 327.4 243 70.8
Carub.0007s3127 Capsella rubella HOM05D006386 ORTHO05D007575 2.5e-85 319.3 245 69.0
BcaC02g09476 Brassica carinata HOM05D006386 ORTHO05D007575 1.2e-82 310.5 245 70.6
C04p43230 Brassica napus HOM05D006386 ORTHO05D007575 2.0e-82 309.7 245 70.2
AL7G44320 Arabidopsis lyrata HOM05D006386 ORTHO05D007575 3.4e-82 308.9 243 67.9
BolC4t25901H Brassica oleracea HOM05D006386 ORTHO05D007575 5.8e-82 308.1 245 70.2
CARHR217490 Cardamine hirsuta HOM05D006386 ORTHO05D007575 3.9e-78 295.4 244 66.0
AT5G35520 Arabidopsis thaliana HOM05D006386 ORTHO05D007575 6.7e-78 294.7 243 65.0
Aa31LG4G9830 Aethionema arabicum HOM05D006386 ORTHO05D007575 2.6e-74 282.7 243 61.3
BraA04t16635Z Brassica rapa HOM05D006386 ORTHO05D007575 1.1e-69 267.3 244 62.3
A04p09730 Brassica napus HOM05D006386 ORTHO05D007575 4.3e-69 265.4 243 62.1
THA.LOC104819388 Tarenaya hassleriana HOM05D006386 ORTHO05D007575 3.1e-67 259.2 245 57.6
GSVIVG01008195001 Vitis vinifera HOM05D006386 ORTHO05D007575 3.6e-55 219.2 252 47.6
Ciclev10021913m.g Citrus clementina HOM05D006386 ORTHO05D007575 1.5e-53 213.8 249 48.2
Gorai.007G040700 Gossypium raimondii HOM05D006386 ORTHO05D007575 1.5e-53 213.8 248 46.4
Gohir.D11G038000 Gossypium hirsutum HOM05D006386 ORTHO05D007575 2.6e-53 213.0 248 46.4
Duzib068G0691 Durio zibethinus HOM05D006386 ORTHO05D007575 4.4e-53 212.2 248 45.6
COL.COLO4_08656 Corchorus olitorius HOM05D006386 ORTHO05D007575 9.7e-53 211.1 248 47.2
Thecc.03G113300 Theobroma cacao HOM05D006386 ORTHO05D007575 9.7e-53 211.1 248 46.0
Gohir.A11G034600 Gossypium hirsutum HOM05D006386 ORTHO05D007575 2.2e-52 209.9 249 45.8
FAN08G0928 Fragaria x ananassa HOM05D006386 ORTHO05D007575 3.8e-49 199.1 248 45.2
Sed0015508 Sechium edule HOM05D006386 ORTHO05D007575 6.5e-49 198.4 246 49.6
FvH4_5g13000 Fragaria vesca HOM05D006386 ORTHO05D007575 8.5e-49 198.0 248 44.0
FAN18G3466 Fragaria x ananassa HOM05D006386 ORTHO05D007575 1.1e-48 197.6 248 44.0
Dinv36853 Davidia involucrata HOM05D006386 ORTHO05D007575 1.9e-48 196.8 248 43.5
Potri.015G055500 Populus trichocarpa HOM05D006386 ORTHO05D007575 2.5e-48 196.4 248 44.0
FAN13G1489 Fragaria x ananassa HOM05D006386 ORTHO05D007575 3.2e-48 196.1 248 44.0
Cfa019518 Carpinus fangiana HOM05D006386 ORTHO05D007575 5.5e-48 195.3 248 45.2
RcHm_v2.0_Chr7g0184161 Rosa chinensis HOM05D006386 ORTHO05D007575 5.5e-48 195.3 249 43.8
Atru.chr9.671 Acer truncatum HOM05D006386 ORTHO05D007575 1.2e-47 194.1 246 43.5
Lj9A435T83 Lonicera japonica HOM05D006386 ORTHO05D007575 2.1e-47 193.4 241 45.2
QL10p021984 Quercus lobata HOM05D006386 ORTHO05D007575 2.7e-47 193.0 242 43.8
CANSAT80G2620 Cannabis sativa HOM05D006386 ORTHO05D007575 8.0e-47 191.4 248 44.0
TAR629G0047 Trochodendron aralioides HOM05D002187 ORTHO05D002243 1.8e-46 190.3 191 54.5
Actinidia36923 Actinidia chinensis HOM05D006386 ORTHO05D007575 3.0e-46 189.5 248 42.3
CiPaw.16G081700 Carya illinoinensis HOM05D006386 ORTHO05D007575 8.8e-46 188.0 247 42.5
CSS0007083 Camellia sinensis var. sinensis HOM05D006386 ORTHO05D007575 2.6e-45 186.4 248 43.1
PGSC0003DMG400024511 Solanum tuberosum HOM05D006386 ORTHO05D007575 3.3e-45 186.0 248 41.9
Nitab4.5_0000646g0180 Nicotiana tabacum HOM05D006386 ORTHO05D007575 1.3e-44 184.1 247 41.3
Manes.01G023400 Manihot esculenta HOM05D006386 ORTHO05D007575 2.2e-44 183.3 246 41.1
SalBow1G4471 Salvia bowleyana HOM05D006386 ORTHO05D007575 2.2e-44 183.3 243 42.0
TWI81G0025 Tripterygium wilfordii HOM05D006386 ORTHO05D007575 2.8e-44 183.0 248 44.0
Eucgr.K02638 Eucalyptus grandis HOM05D006386 ORTHO05D007575 3.7e-44 182.6 247 42.9
AUR62032161 Chenopodium quinoa HOM05D006386 ORTHO05D007575 8.2e-44 181.4 244 42.6
HanXRQChr16g0502011 Helianthus annuus HOM05D006386 ORTHO05D007575 1.4e-43 180.6 246 43.1
Sabra15G0080700 Salix brachista HOM05D006386 ORTHO05D007575 1.4e-43 180.6 274 39.1
ClCG06G015230 Citrullus lanatus HOM05D006386 ORTHO05D007575 1.8e-43 180.3 249 45.0
vmacro17651 Vaccinium macrocarpon HOM05D006386 ORTHO05D007575 4.1e-43 179.1 181 51.4
EL10Ac9g20981 Beta vulgaris HOM05D006386 ORTHO05D007575 9.1e-43 177.9 244 42.6
Nn3g17620 Nelumbo nucifera HOM05D006386 ORTHO05D007575 9.1e-43 177.9 244 43.4
Lsat_1_v5_gn_4_112761 Lactuca sativa HOM05D006386 ORTHO05D007575 5.9e-42 175.3 243 42.0
Nitab4.5_0004342g0080 Nicotiana tabacum HOM05D006386 ORTHO05D007575 1.3e-41 174.1 247 39.3
Sc04g0004070 Simmondsia chinensis HOM05D006386 ORTHO05D007575 2.9e-41 172.9 255 40.4
MD14G1218500 Malus domestica HOM05D006386 ORTHO05D007575 5.0e-41 172.2 249 40.6
Lalb_Chr13g0302571 Lupinus albus HOM05D006386 ORTHO05D007575 6.5e-41 171.8 249 40.2
Hund02537 Selenicereus undatus HOM05D006386 ORTHO05D007575 1.5e-40 170.6 244 42.2
Sopen03g033610 Solanum pennellii HOM05D006386 ORTHO05D007575 1.5e-40 170.6 247 39.3
Cc04_g07860 Coffea canephora HOM05D006386 ORTHO05D007575 2.5e-40 169.9 244 40.2
Solyc03g114520.3 Solanum lycopersicum HOM05D006386 ORTHO05D007575 2.5e-40 169.9 247 38.9
Lj6g0003397 Lotus japonicus HOM05D006386 ORTHO05D007575 5.5e-40 168.7 248 40.3
Oeu010193.1 Olea europaea HOM05D006386 ORTHO05D007575 7.2e-40 168.3 244 40.2
Lsat_1_v5_gn_4_112801 Lactuca sativa HOM05D006386 ORTHO05D007575 9.4e-40 167.9 213 42.3
Glyma.17G083800 Glycine max HOM05D006386 ORTHO05D007575 1.6e-39 167.2 249 39.4
ECA246G4419 Erigeron canadensis HOM05D006386 ORTHO05D007575 2.7e-39 166.4 242 41.3
Migut.D01482 Erythranthe guttata HOM05D006386 ORTHO05D007575 2.7e-39 166.4 245 42.4
VMungo1215G2864 Vigna mungo HOM05D006386 ORTHO05D007575 2.7e-39 166.4 248 38.3
arahy.Tifrunner.gnm1.ann1.3Z7JIG Arachis hypogaea HOM05D006386 ORTHO05D007575 4.7e-39 165.6 212 43.9
arahy.Tifrunner.gnm1.ann1.HL5ANR Arachis hypogaea HOM05D006386 ORTHO05D007575 2.3e-38 163.3 217 42.4
Phvul.002G142200 Phaseolus vulgaris HOM05D006386 ORTHO05D007575 5.2e-38 162.2 249 38.2
unitig_62.g23762 Utricularia gibba HOM05D006386 ORTHO05D007575 5.2e-38 162.2 219 42.5
Hma1.2p1_0340F.1_g130200 Hydrangea macrophylla HOM05D006386 ORTHO05D007575 8.8e-38 161.4 245 40.0
Glyma.05G016300 Glycine max HOM05D006386 ORTHO05D007575 3.4e-37 159.5 241 38.6
Ca_21735_v3 Cicer arietinum L. HOM05D006386 ORTHO05D007575 9.7e-37 157.9 246 37.0
Medtr4g112610 Medicago truncatula HOM05D006386 ORTHO05D007575 9.7e-37 157.9 246 37.0
TPR.G23873 Trifolium pratense HOM05D006386 ORTHO05D007575 1.3e-36 157.5 247 36.8
ECA232G1078 Erigeron canadensis HOM05D006386 ORTHO05D007575 1.7e-36 157.1 242 39.3
Phvul.003G180600 Phaseolus vulgaris HOM05D006386 ORTHO05D007575 1.7e-36 157.1 245 37.6
SGA_v2.0_scaffold42G16024 Striga asiatica HOM05D006386 ORTHO05D007575 1.7e-36 157.1 235 40.9
PGR044G0997 Punica granatum HOM05D006386 ORTHO05D007575 2.2e-36 156.8 242 38.4
PSO017G3209 Papaver somniferum HOM05D006386 ORTHO05D007575 6.3e-36 155.2 226 38.1
PSO478G3500 Papaver somniferum HOM05D006386 ORTHO05D007575 8.3e-36 154.8 226 38.5
MSTRG.4502 Avicennia marina HOM05D006386 ORTHO05D007575 1.4e-35 154.1 242 38.4
arahy.Tifrunner.gnm1.ann1.X9R15Y Arachis hypogaea HOM05D006386 ORTHO05D007575 3.1e-35 152.9 227 40.1
Medtr4g112830 Medicago truncatula HOM05D006386 ORTHO05D007575 5.3e-35 152.1 249 35.7
CDE02G3865 Ceratophyllum demersum HOM05D006386 ORTHO05D007575 1.7e-33 147.1 235 37.0
Prupe.5G212600 Prunus persica HOM05D006386 ORTHO05D007575 6.5e-33 145.2 245 38.0
ATR0730G046 Amborella trichopoda HOM05D006386 ORTHO05D007575 4.2e-32 142.5 247 36.8
SHI18989 Sapria himalayana HOM05D006386 ORTHO05D007575 9.4e-32 141.4 181 42.0
CsaV3_1G003130 Cucumis sativus L. HOM05D006386 ORTHO05D007575 4.7e-31 139.0 248 40.3
Psat4g044400 Pisum sativum HOM05D006386 ORTHO05D007575 4.0e-30 136.0 255 38.0
Aqoxy6G00629 Aquilegia oxysepala HOM05D006386 ORTHO05D007575 3.4e-29 132.9 212 38.7
MSTRG.4503 Avicennia marina HOM05D006386 ORTHO05D007575 3.4e-29 132.9 181 41.4
Peaxi162Scf00119g00118 Petunia axillaris HOM05D006386 ORTHO05D007575 5.7e-29 132.1 236 37.3
HPP92_015441 Vanilla planifolia HOM05D006386 ORTHO05D007575 7.0e-27 125.2 246 33.7
MBI10_g16789_MAGBIO Magnolia biondii HOM05D006386 ORTHO05D007575 9.1e-27 124.8 175 40.0
Actinidia33576 Actinidia chinensis HOM05D006386 ORTHO05D007575 3.5e-26 122.9 267 34.8
Nitab4.5_0005402g0030 Nicotiana tabacum HOM05D002295 ORTHO05D007575 9.5e-24 114.8 229 34.9
MD06G1208100 Malus domestica HOM05D006386 ORTHO05D007575 1.0e-22 111.3 189 37.6
CAN.G982.14 Capsicum annuum HOM05D006386 ORTHO05D007575 4.4e-21 105.9 127 46.5
Aqoxy3G00630 Aquilegia oxysepala HOM05D006386 ORTHO05D007575 5.7e-21 105.5 217 34.1
arahy.Tifrunner.gnm1.ann1.7DA3AY Arachis hypogaea HOM05D006386 ORTHO05D007575 4.9e-20 102.4 246 32.1
Cpa.g.sc53.22 Carica papaya HOM05D006386 ORTHO05D007575 1.1e-19 101.3 156 43.6
Zm00001eb433940 Zea mays HOM05D006386 ORTHO05D007575 1.4e-19 100.9 202 31.2
Cpa.g.sc53.23 Carica papaya HOM05D006386 ORTHO05D007575 3.5e-18 96.3 78 57.7
Os02g0620100 Oryza sativa ssp. japonica HOM05D006386 ORTHO05D007575 1.0e-17 94.7 186 29.6
Zm00001eb065850 Zea mays HOM05D006386 ORTHO05D007575 6.1e-15 85.5 197 29.4
AUR62036917 Chenopodium quinoa HOM05D006386 ORTHO05D007575 5.8e-13 79.0 134 35.1
TWI81G0622 Tripterygium wilfordii HOM05D006386 ORTHO05D007575 1.3e-12 77.8 136 39.0
Actinidia27067 Actinidia chinensis HOM05D006386 ORTHO05D007575 4.9e-12 75.9 60 60.0
MELO3C028557.2 Cucumis melo HOM05D006386 ORTHO05D007575 6.4e-12 75.5 61 59.0
DCAR_029598 Daucus carota HOM05D006386 ORTHO05D007575 7.8e-10 68.6 104 40.4
Aqoxy6G02623 Aquilegia oxysepala HOM05D006386 ORTHO05D007575 1.2e-07 61.2 110 37.3
Rhsim08G0139600 Rhododendron simsii HOM05D006386 ORTHO05D007575 2.8e-07 60.1 39 66.7


User provided reference genes

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