Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp7g06720 Schrenkiella parvula HOM05D006378 ORTHO05D007959 0.0e+00 1782.7 863 100.0
BcaB06g26949 Brassica carinata HOM05D006378 ORTHO05D007959 0.0e+00 1611.7 864 91.0
C04p44250 Brassica napus HOM05D006378 ORTHO05D007959 0.0e+00 1609.3 864 90.3
BolC4t25998H Brassica oleracea HOM05D006378 ORTHO05D007959 0.0e+00 1609.0 864 90.3
BcaC02g09569 Brassica carinata HOM05D006378 ORTHO05D007959 0.0e+00 1607.8 864 90.2
BraA04t16723Z Brassica rapa HOM05D006378 ORTHO05D007959 0.0e+00 1595.9 862 89.9
A04p10600 Brassica napus HOM05D006378 ORTHO05D007959 0.0e+00 1594.7 862 89.9
Thhalv10003638m.g Eutrema salsugineum HOM05D006378 ORTHO05D007959 0.0e+00 1583.9 868 88.0
Carub.0002s2445 Capsella rubella HOM05D006378 ORTHO05D007959 0.0e+00 1524.6 862 85.6
AT1G77550 Arabidopsis thaliana HOM05D006378 ORTHO05D007959 0.0e+00 1518.1 861 85.6
AL2G37770 Arabidopsis lyrata HOM05D006378 ORTHO05D007959 0.0e+00 1517.3 862 85.3
Aa31LG2G20840 Aethionema arabicum HOM05D006378 ORTHO05D007959 0.0e+00 1469.1 860 83.4
THA.LOC104826591 Tarenaya hassleriana HOM05D006378 ORTHO05D007959 0.0e+00 1449.1 861 80.3
Cpa.g.sc28.38 Carica papaya HOM05D006378 ORTHO05D007959 0.0e+00 1311.6 861 72.1
Thecc.09G076800 Theobroma cacao HOM05D006378 ORTHO05D007959 0.0e+00 1286.9 862 70.6
Duzib168G0703 Durio zibethinus HOM05D006378 ORTHO05D007959 0.0e+00 1285.4 862 71.2
Potri.006G141900 Populus trichocarpa HOM05D006378 ORTHO05D007959 0.0e+00 1281.5 868 70.4
Sabra06G0111000 Salix brachista HOM05D006378 ORTHO05D007959 0.0e+00 1280.4 868 70.5
Gohir.A06G076500 Gossypium hirsutum HOM05D006378 ORTHO05D007959 0.0e+00 1277.3 863 70.5
Gohir.D06G075500 Gossypium hirsutum HOM05D006378 ORTHO05D007959 0.0e+00 1275.8 863 70.3
Ciclev10007418m.g Citrus clementina HOM05D006378 ORTHO05D007959 0.0e+00 1275.0 868 70.2
Manes.03G040400 Manihot esculenta HOM05D006378 ORTHO05D007959 0.0e+00 1273.8 865 71.0
Gorai.010G088400 Gossypium raimondii HOM05D006378 ORTHO05D007959 0.0e+00 1270.4 863 70.1
QL11p000773 Quercus lobata HOM05D006378 ORTHO05D007959 0.0e+00 1250.3 868 69.0
CARHR071080 Cardamine hirsuta HOM05D006378 ORTHO05D007959 0.0e+00 1248.4 690 87.1
TWI34G0472 Tripterygium wilfordii HOM05D006378 ORTHO05D007959 0.0e+00 1245.0 864 69.1
Sc08g0008890 Simmondsia chinensis HOM05D006378 ORTHO05D007959 0.0e+00 1242.3 861 68.6
vmacro06342 Vaccinium macrocarpon HOM05D006378 ORTHO05D007959 0.0e+00 1241.9 866 68.6
CSS0003361 Camellia sinensis var. sinensis HOM05D006378 ORTHO05D007959 0.0e+00 1240.7 862 68.4
Cfa002988 Carpinus fangiana HOM05D006378 ORTHO05D007959 0.0e+00 1240.3 863 68.9
Cc06_g12180 Coffea canephora HOM05D006378 ORTHO05D007959 0.0e+00 1239.9 865 68.6
GSVIVG01015082001 Vitis vinifera HOM05D006378 ORTHO05D007959 0.0e+00 1239.9 866 68.9
CSS0014220 Camellia sinensis var. sinensis HOM05D006378 ORTHO05D007959 0.0e+00 1239.2 862 68.4
MELO3C015521.2 Cucumis melo HOM05D006378 ORTHO05D007959 0.0e+00 1236.5 868 68.0
Eucgr.C03329 Eucalyptus grandis HOM05D006378 ORTHO05D007959 0.0e+00 1232.2 864 67.5
CANSAT56G1041 Cannabis sativa HOM05D006378 ORTHO05D007959 0.0e+00 1230.3 863 68.3
Sed0026053 Sechium edule HOM05D006378 ORTHO05D007959 0.0e+00 1229.5 871 67.5
Prupe.7G198800 Prunus persica HOM05D006378 ORTHO05D007959 0.0e+00 1227.2 863 68.3
Rhsim03G0227500 Rhododendron simsii HOM05D006378 ORTHO05D007959 0.0e+00 1227.2 866 67.9
ClCG03G015080 Citrullus lanatus HOM05D006378 ORTHO05D007959 0.0e+00 1226.8 877 66.4
CsaV3_1G041050 Cucumis sativus L. HOM05D006378 ORTHO05D007959 0.0e+00 1226.8 872 67.5
Eucgr.C03264 Eucalyptus grandis HOM05D006378 ORTHO05D007959 0.0e+00 1225.7 864 67.2
Hma1.2p1_0179F.1_g079520 Hydrangea macrophylla HOM05D006378 ORTHO05D007959 0.0e+00 1223.0 877 67.6
Medtr2g041640 Medicago truncatula HOM05D006378 ORTHO05D007959 0.0e+00 1223.0 864 68.1
TAR383G0342 Trochodendron aralioides HOM05D006378 ORTHO05D007959 0.0e+00 1218.8 869 67.3
TPR.G28586 Trifolium pratense HOM05D006378 ORTHO05D007959 0.0e+00 1216.4 868 66.7
Glyma.15G177600 Glycine max HOM05D006378 ORTHO05D007959 0.0e+00 1214.5 862 66.7
MSTRG.19459 Avicennia marina HOM05D006378 ORTHO05D007959 0.0e+00 1214.1 860 67.1
MD15G1217600 Malus domestica HOM05D006378 ORTHO05D007959 0.0e+00 1214.1 865 67.4
Aqoxy7G04130 Aquilegia oxysepala HOM05D006378 ORTHO05D007959 0.0e+00 1213.7 871 67.5
RcHm_v2.0_Chr2g0094931 Rosa chinensis HOM05D006378 ORTHO05D007959 0.0e+00 1213.7 864 67.6
Psat1g134280 Pisum sativum HOM05D006378 ORTHO05D007959 0.0e+00 1211.4 863 67.4
VMungo1309G1044 Vigna mungo HOM05D006378 ORTHO05D007959 0.0e+00 1209.9 861 67.0
Migut.J00925 Erythranthe guttata HOM05D006378 ORTHO05D007959 0.0e+00 1209.1 861 66.6
PGR044G1219 Punica granatum HOM05D006378 ORTHO05D007959 0.0e+00 1208.0 871 66.2
Haze_26013 Corylus avellana HOM05D006378 ORTHO05D007959 0.0e+00 1207.6 864 67.9
Lalb_Chr08g0232591 Lupinus albus HOM05D006378 ORTHO05D007959 0.0e+00 1207.6 865 67.2
Ca_02206_v3 Cicer arietinum L. HOM05D006378 ORTHO05D007959 0.0e+00 1207.2 869 66.9
FAN26G1418 Fragaria x ananassa HOM05D006378 ORTHO05D007959 0.0e+00 1203.3 864 66.3
Phvul.009G227300 Phaseolus vulgaris HOM05D006378 ORTHO05D007959 0.0e+00 1201.0 867 66.6
FAN26G3001 Fragaria x ananassa HOM05D006378 ORTHO05D007959 0.0e+00 1198.7 864 66.1
Dinv42394 Davidia involucrata HOM05D006378 ORTHO05D007959 0.0e+00 1198.3 869 67.2
Nitab4.5_0009436g0010 Nicotiana tabacum HOM05D006378 ORTHO05D007959 0.0e+00 1198.3 869 66.2
Lj6g0025012 Lotus japonicus HOM05D006378 ORTHO05D007959 0.0e+00 1198.0 864 66.7
Oeu035912.1 Olea europaea HOM05D006378 ORTHO05D007959 0.0e+00 1197.2 856 66.6
Hund08780 Selenicereus undatus HOM05D006378 ORTHO05D007959 0.0e+00 1195.3 862 67.4
Sopen07g021350 Solanum pennellii HOM05D006378 ORTHO05D007959 0.0e+00 1194.1 862 66.7
FAN19G1878 Fragaria x ananassa HOM05D006378 ORTHO05D007959 0.0e+00 1193.7 886 64.8
SGA_v2.0_scaffold91G28112 Striga asiatica HOM05D006378 ORTHO05D007959 0.0e+00 1193.7 857 66.7
Nitab4.5_0000343g0150 Nicotiana tabacum HOM05D006378 ORTHO05D007959 0.0e+00 1193.3 868 65.9
EL10Ac8g19061 Beta vulgaris HOM05D006378 ORTHO05D007959 0.0e+00 1186.0 863 66.6
Lj7C687T7 Lonicera japonica HOM05D006378 ORTHO05D007959 0.0e+00 1186.0 868 66.4
SalBow6G1560 Salvia bowleyana HOM05D006378 ORTHO05D007959 0.0e+00 1184.9 864 65.9
Solyc07g041870.3 Solanum lycopersicum HOM05D006378 ORTHO05D007959 0.0e+00 1182.2 862 66.0
AUR62025249 Chenopodium quinoa HOM05D006378 ORTHO05D007959 0.0e+00 1181.8 882 64.7
HanXRQChr06g0178331 Helianthus annuus HOM05D006378 ORTHO05D007959 0.0e+00 1181.0 865 66.0
AUR62028935 Chenopodium quinoa HOM05D006378 ORTHO05D007959 0.0e+00 1177.2 874 65.2
DCAR_011949 Daucus carota HOM05D006378 ORTHO05D007959 0.0e+00 1174.5 870 64.7
PGSC0003DMG400019029 Solanum tuberosum HOM05D006378 ORTHO05D007959 0.0e+00 1174.5 862 66.0
Nn8g38637 Nelumbo nucifera HOM05D006378 ORTHO05D007959 0.0e+00 1172.5 866 65.7
Ah.09g231620 Amaranthus hybridus HOM05D006378 ORTHO05D007959 0.0e+00 1169.1 863 65.2
arahy.Tifrunner.gnm1.ann1.LZ43MP Arachis hypogaea HOM05D006378 ORTHO05D007959 0.0e+00 1169.1 861 65.2
MBI19_g16222_MAGBIO Magnolia biondii HOM05D006378 ORTHO05D007959 0.0e+00 1167.9 870 65.4
Lsat_1_v5_gn_8_86460 Lactuca sativa HOM05D006378 ORTHO05D007959 0.0e+00 1166.8 867 65.3
PSO135G0915 Papaver somniferum HOM05D006378 ORTHO05D007959 0.0e+00 1164.4 877 64.1
arahy.Tifrunner.gnm1.ann1.CBKZ0V Arachis hypogaea HOM05D006378 ORTHO05D007959 0.0e+00 1161.7 858 64.7
ECA236G3597 Erigeron canadensis HOM05D006378 ORTHO05D007959 0.0e+00 1147.9 864 62.8
Peaxi162Scf00127g01816 Petunia axillaris HOM05D006378 ORTHO05D007959 0.0e+00 1120.9 862 63.9
Os03g0179000 Oryza sativa ssp. japonica HOM05D006378 ORTHO05D007959 0.0e+00 1117.1 865 62.4
CAN.G62.5 Capsicum annuum HOM05D006378 ORTHO05D007959 0.0e+00 1102.0 828 65.0
HPP92_002164 Vanilla planifolia HOM05D006378 ORTHO05D007959 0.0e+00 1076.2 842 63.5
CiPaw.03G206400 Carya illinoinensis HOM05D006378 ORTHO05D007959 2.7e-307 1058.5 748 68.3
COL.COLO4_18097 Corchorus olitorius HOM05D006378 ORTHO05D007959 5.3e-303 1044.3 861 61.2
ATR0598G254 Amborella trichopoda HOM05D006378 ORTHO05D007959 2.3e-298 1028.9 860 57.7
Atru.chr7.1707 Acer truncatum HOM05D006378 ORTHO05D007959 6.7e-298 1027.3 646 74.6
unitig_578.g15677 Utricularia gibba HOM05D006378 ORTHO05D007959 1.1e-295 1020.0 854 58.3
FvH4_1g08650 Fragaria vesca HOM05D006378 ORTHO05D007959 5.9e-294 1014.2 691 68.9
Mapoly0113s0055 Marchantia polymorpha HOM05D006378 ORTHO05D007959 3.9e-282 974.9 860 54.5
AagrBONN_evm.TU.Sc2ySwM_117.2900 Anthoceros agrestis HOM05D006378 ORTHO05D007959 7.0e-279 964.1 863 53.5
SMO174G0008 Selaginella moellendorffii HOM05D006378 ORTHO05D007959 2.2e-277 959.1 859 55.3
Pp3c6_19960 Physcomitrium patens HOM05D006378 ORTHO05D007959 4.2e-268 928.3 867 51.9
CBR_g12041 Chara braunii HOM05D006378 ORTHO05D007959 2.1e-203 713.4 756 48.1
Actinidia38480 Actinidia chinensis HOM05D006378 ORTHO05D007959 1.4e-154 551.2 388 67.3
Zm00001eb401890 Zea mays HOM05D006378 ORTHO05D007959 1.9e-151 540.8 473 57.1
SEGI_03485 Sequoiadendron giganteum HOM05D006378 ORTHO05D007959 6.6e-136 489.2 459 56.0
FAN28G1488 Fragaria x ananassa HOM05D006378 ORTHO05D007959 1.5e-116 424.9 360 58.9
CAN.G81.12 Capsicum annuum HOM05D006378 ORTHO05D007959 2.4e-82 311.2 311 55.3
SEGI_37917 Sequoiadendron giganteum HOM05D006378 ORTHO05D007959 1.5e-63 248.8 168 69.6
CAN.G81.10 Capsicum annuum HOM05D006378 ORTHO05D007959 2.4e-61 241.5 204 57.4
Psat7g020000 Pisum sativum HOM05D006378 ORTHO05D007959 1.4e-48 199.1 161 62.7
CAN.G81.11 Capsicum annuum HOM05D006378 ORTHO05D007959 1.8e-40 172.2 198 48.5
CDE05G1577 Ceratophyllum demersum HOM05D006378 ORTHO05D007959 2.3e-40 171.8 170 49.4
CDE05G1890 Ceratophyllum demersum HOM05D006378 ORTHO05D007959 2.1e-33 148.7 103 65.0
SHI02337 Sapria himalayana HOM05D006378 ORTHO05D007959 5.4e-29 134.0 149 47.7
Actinidia29933 Actinidia chinensis HOM05D006378 ORTHO05D007959 5.5e-26 124.0 85 68.2
Actinidia29932 Actinidia chinensis HOM05D006378 ORTHO05D007959 3.6e-25 121.3 120 50.8
RcHm_v2.0_Chr2g0095091 Rosa chinensis HOM05D006378 ORTHO05D007959 4.4e-23 114.4 69 72.5
RcHm_v2.0_Chr2g0095081 Rosa chinensis HOM05D006378 ORTHO05D007959 7.5e-23 113.6 86 65.1
SHI02335 Sapria himalayana HOM05D006378 ORTHO05D007959 3.1e-21 108.2 90 61.1
RcHm_v2.0_Chr2g0095101 Rosa chinensis HOM05D006378 ORTHO05D007959 1.1e-18 99.8 80 62.5
SHI02336 Sapria himalayana HOM05D006378 ORTHO05D007959 1.8e-16 92.4 108 50.0
Cre06.g300250 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 3.2e-13 81.6 274 25.5
Mapoly0012s0012 Marchantia polymorpha HOM05D008676 ORTHO05D010936 7.0e-13 80.5 320 24.4
CBR_g54068 Chara braunii HOM05D008676 ORTHO05D010936 3.5e-12 78.2 240 26.2
Cre17.g699500 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 5.9e-12 77.4 322 25.5
AagrBONN_evm.TU.Sc2ySwM_228.857 Anthoceros agrestis HOM05D008676 ORTHO05D010936 7.8e-12 77.0 306 25.2
SMO337G0080 Selaginella moellendorffii HOM05D008676 ORTHO05D010936 3.9e-11 74.7 304 25.7
MCO03G450 Micromonas commoda HOM05D008676 ORTHO05D010936 5.0e-11 74.3 339 21.5
MCO11G220 Micromonas commoda HOM05D008676 ORTHO05D010936 6.6e-11 73.9 277 23.5
SHI02338 Sapria himalayana HOM05D006378 ORTHO05D007959 4.3e-10 71.2 65 53.8
SHI02339 Sapria himalayana HOM05D006378 ORTHO05D007959 5.6e-10 70.9 94 43.6
PRCOL_00007033 Prasinoderma coloniale HOM05D008676 ORTHO05D010936 1.6e-09 69.3 312 23.4
Pp3c1_16240 Physcomitrium patens HOM05D008676 ORTHO05D010936 8.0e-09 67.0 329 23.7
MCO05G481 Micromonas commoda HOM05D008676 ORTHO05D010936 1.0e-08 66.6 289 25.6
Cre02.g146650 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 6.8e-08 63.9 299 23.1
PRCOL_00004385 Prasinoderma coloniale HOM05D008676 ORTHO05D010936 1.2e-07 63.2 302 20.2
SMO117G0188 Selaginella moellendorffii HOM05D008676 ORTHO05D010936 1.2e-07 63.2 298 22.5
SMO348G0088 Selaginella moellendorffii HOM05D008676 ORTHO05D010936 1.5e-07 62.8 302 25.5
MCO11G738 Micromonas commoda HOM05D008676 ORTHO05D010936 3.4e-07 61.6 305 24.6
AagrBONN_evm.TU.Sc2ySwM_369.291 Anthoceros agrestis HOM05D008676 ORTHO05D010936 9.8e-07 60.1 167 26.3
Actinidia29934 Actinidia chinensis HOM05D006378 ORTHO05D007959 1.3e-06 59.7 32 78.1
Pp3c6_25370 Physcomitrium patens HOM05D008676 ORTHO05D010936 3.7e-06 58.2 298 25.2


User provided reference genes

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