Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp7g06500 Schrenkiella parvula HOM05D005150 ORTHO05D006070 1.9e-53 212.2 108 100.0
A04p09910 Brassica napus HOM05D005150 ORTHO05D006070 1.1e-40 169.9 108 82.4
BraA04t16654Z Brassica rapa HOM05D005150 ORTHO05D006070 1.1e-40 169.9 108 82.4
BcaC02g09491 Brassica carinata HOM05D005150 ORTHO05D006070 3.2e-40 168.3 108 81.5
BolC4t25919H Brassica oleracea HOM05D005150 ORTHO05D006070 3.2e-40 168.3 108 81.5
C04p43410 Brassica napus HOM05D005150 ORTHO05D006070 2.7e-39 165.2 108 80.6
AL7G44580 Arabidopsis lyrata HOM05D005150 ORTHO05D006070 1.3e-36 156.4 108 75.0
Aa31sc697G10 Aethionema arabicum HOM05D005150 ORTHO05D006070 8.2e-36 153.7 108 74.1
CARHR216910 Cardamine hirsuta HOM05D005150 ORTHO05D006070 7.6e-34 147.1 108 75.0
Carub.0007s3148 Capsella rubella HOM05D005150 ORTHO05D006070 8.5e-33 143.7 109 69.7
AT5G35732 Arabidopsis thaliana HOM05D005150 ORTHO05D006070 1.9e-32 142.5 100 72.0
BcaB06g26977 Brassica carinata HOM05D025437 ORTHO05D006070 1.2e-31 139.8 107 71.0
AL3G42390 Arabidopsis lyrata HOM05D005150 ORTHO05D006070 5.7e-29 131.0 108 64.8
AT2G04795 Arabidopsis thaliana HOM05D005150 ORTHO05D006070 2.8e-28 128.6 108 63.9
A03p44460 Brassica napus HOM05D005150 ORTHO05D006070 2.4e-27 125.6 108 63.9
BraA03t13579Z Brassica rapa HOM05D005150 ORTHO05D006070 2.4e-27 125.6 108 63.9
THA.LOC104826613 Tarenaya hassleriana HOM05D005150 ORTHO05D006070 5.3e-27 124.4 109 66.1
BcaB08g34491 Brassica carinata HOM05D005150 ORTHO05D006070 6.9e-27 124.0 108 62.0
Sp3g23410 Schrenkiella parvula HOM05D005150 ORTHO05D006070 9.1e-27 123.6 108 64.8
BcaC01g06899 Brassica carinata HOM05D005150 ORTHO05D006070 3.4e-26 121.7 108 62.0
C03p55240 Brassica napus HOM05D005150 ORTHO05D006070 3.4e-26 121.7 108 62.0
BolC3t17797H Brassica oleracea HOM05D005150 ORTHO05D006070 3.4e-26 121.7 108 62.0
Aa31sc53G30 Aethionema arabicum HOM05D005150 ORTHO05D006070 3.8e-25 118.2 108 63.0
THA.LOC104808855 Tarenaya hassleriana HOM05D005150 ORTHO05D006070 4.2e-24 114.8 109 62.4
CARHR102770 Cardamine hirsuta HOM05D005150 ORTHO05D006070 5.5e-24 114.4 108 57.4
Thecc.01G187900 Theobroma cacao HOM05D005150 ORTHO05D006070 9.7e-21 103.6 114 50.0
Cpa.g.sc136.7 Carica papaya HOM05D005150 ORTHO05D006070 2.2e-20 102.4 115 51.3
CiPaw.03G276700 Carya illinoinensis HOM05D005150 ORTHO05D006070 2.8e-20 102.1 113 47.8
Atru.chr6.3335 Acer truncatum HOM05D005150 ORTHO05D006070 4.8e-20 101.3 122 50.0
Cfa014266 Carpinus fangiana HOM05D005150 ORTHO05D006070 6.3e-20 100.9 113 48.7
Haze_12715 Corylus avellana HOM05D005150 ORTHO05D006070 6.3e-20 100.9 113 48.7
ClCG02G002530 Citrullus lanatus HOM05D005150 ORTHO05D006070 1.4e-19 99.8 116 47.4
ClCG02G002570 Citrullus lanatus HOM05D005150 ORTHO05D006070 1.4e-19 99.8 116 47.4
MELO3C018891.2 Cucumis melo HOM05D005150 ORTHO05D006070 1.4e-19 99.8 114 45.6
Sed0012024 Sechium edule HOM05D005150 ORTHO05D006070 1.4e-19 99.8 110 46.4
CsaV3_7G002850 Cucumis sativus L. HOM05D005150 ORTHO05D006070 2.4e-19 99.0 114 46.5
Hma1.2p1_0133F.1_g061080 Hydrangea macrophylla HOM05D005150 ORTHO05D006070 2.4e-19 99.0 115 47.8
Sed0026674 Sechium edule HOM05D005150 ORTHO05D006070 5.3e-19 97.8 103 50.5
Carub.0003s2640 Capsella rubella HOM05D005150 ORTHO05D006070 9.1e-19 97.1 110 53.6
Duzib133G1369 Durio zibethinus HOM05D005150 ORTHO05D006070 9.1e-19 97.1 112 47.3
DCAR_012901 Daucus carota HOM05D005150 ORTHO05D006070 1.2e-18 96.7 108 49.1
PGR142G3730 Punica granatum HOM05D005150 ORTHO05D006070 1.5e-18 96.3 110 50.0
FAN05G2177 Fragaria x ananassa HOM05D005150 ORTHO05D006070 2.0e-18 95.9 108 45.4
FAN02G0634 Fragaria x ananassa HOM05D005150 ORTHO05D006070 2.6e-18 95.5 114 47.4
RcHm_v2.0_Chr2g0156971 Rosa chinensis HOM05D005150 ORTHO05D006070 2.6e-18 95.5 114 46.5
QL08p029214 Quercus lobata HOM05D005150 ORTHO05D006070 7.7e-18 94.0 112 45.5
Actinidia21452 Actinidia chinensis HOM05D005150 ORTHO05D006070 1.0e-17 93.6 112 42.0
Nn1g07416 Nelumbo nucifera HOM05D005150 ORTHO05D006070 2.2e-17 92.4 113 46.0
Gorai.007G167900 Gossypium raimondii HOM05D005150 ORTHO05D006070 3.8e-17 91.7 111 46.8
Potri.002G222900 Populus trichocarpa HOM05D005150 ORTHO05D006070 6.5e-17 90.9 112 47.3
DCAR_032165 Daucus carota HOM05D005150 ORTHO05D006070 8.5e-17 90.5 113 44.2
Gohir.A07G189900 Gossypium hirsutum HOM05D005150 ORTHO05D006070 8.5e-17 90.5 116 47.4
Gohir.D07G196100 Gossypium hirsutum HOM05D005150 ORTHO05D006070 8.5e-17 90.5 116 47.4
Gohir.D11G157400 Gossypium hirsutum HOM05D005150 ORTHO05D006070 8.5e-17 90.5 111 45.9
Gorai.001G219600 Gossypium raimondii HOM05D005150 ORTHO05D006070 8.5e-17 90.5 116 47.4
Nn1g03285 Nelumbo nucifera HOM05D005150 ORTHO05D006070 1.4e-16 89.7 113 43.4
Phvul.008G205400 Phaseolus vulgaris HOM05D005150 ORTHO05D006070 1.4e-16 89.7 108 43.5
FvH4_6g41440 Fragaria vesca HOM05D005150 ORTHO05D006070 1.9e-16 89.4 100 43.0
VMungo0647G0767 Vigna mungo HOM05D005150 ORTHO05D006070 1.9e-16 89.4 108 43.5
Gohir.A11G150900 Gossypium hirsutum HOM05D005150 ORTHO05D006070 3.2e-16 88.6 111 45.9
Manes.12G062667 Manihot esculenta HOM05D005150 ORTHO05D006070 4.2e-16 88.2 113 47.8
Manes.12G062700 Manihot esculenta HOM05D005150 ORTHO05D006070 4.2e-16 88.2 113 47.8
Gorai.001G194000 Gossypium raimondii HOM05D005150 ORTHO05D006070 5.5e-16 87.8 115 46.1
CAN.G584.30 Capsicum annuum HOM05D005150 ORTHO05D006070 1.2e-15 86.7 109 42.2
HanXRQChr10g0306371 Helianthus annuus HOM05D005150 ORTHO05D006070 1.2e-15 86.7 115 43.5
Manes.13G063792 Manihot esculenta HOM05D005150 ORTHO05D006070 1.2e-15 86.7 117 48.7
Rhsim06G0172300 Rhododendron simsii HOM05D005150 ORTHO05D006070 1.2e-15 86.7 115 44.3
vmacro12127 Vaccinium macrocarpon HOM05D005150 ORTHO05D006070 1.2e-15 86.7 115 43.5
arahy.Tifrunner.gnm1.ann1.CR4AH5 Arachis hypogaea HOM05D005150 ORTHO05D006070 2.1e-15 85.9 116 42.2
arahy.Tifrunner.gnm1.ann1.V5U7H6 Arachis hypogaea HOM05D005150 ORTHO05D006070 2.1e-15 85.9 116 42.2
Glyma.14G039800 Glycine max HOM05D005150 ORTHO05D006070 2.1e-15 85.9 114 43.9
MD17G1110500 Malus domestica HOM05D005150 ORTHO05D006070 2.1e-15 85.9 127 42.5
Sabra14G0124000 Salix brachista HOM05D005150 ORTHO05D006070 2.1e-15 85.9 113 46.0
CSS0044074 Camellia sinensis var. sinensis HOM05D005150 ORTHO05D006070 2.7e-15 85.5 106 42.5
ECA234G4664 Erigeron canadensis HOM05D005150 ORTHO05D006070 2.7e-15 85.5 116 43.1
Gohir.A07G176012 Gossypium hirsutum HOM05D005150 ORTHO05D006070 3.6e-15 85.1 109 45.0
Potri.014G162400 Populus trichocarpa HOM05D005150 ORTHO05D006070 4.7e-15 84.7 114 47.4
Rhsim06G0172200 Rhododendron simsii HOM05D005150 ORTHO05D006070 4.7e-15 84.7 119 42.0
Hma1.2p1_0405F.1_g145660 Hydrangea macrophylla HOM05D005150 ORTHO05D006070 8.0e-15 84.0 115 43.5
Prupe.3G204400 Prunus persica HOM05D005150 ORTHO05D006070 8.0e-15 84.0 123 41.5
MD09G1119700 Malus domestica HOM05D005150 ORTHO05D006070 1.8e-14 82.8 127 42.5
CsaV3_6G009360 Cucumis sativus L. HOM05D005150 ORTHO05D006070 3.0e-14 82.0 114 44.7
Oeu029950.1 Olea europaea HOM05D005150 ORTHO05D006070 3.9e-14 81.6 110 40.9
Phvul.006G020400 Phaseolus vulgaris HOM05D005150 ORTHO05D006070 5.2e-14 81.3 108 38.9
Lj6g0009976 Lotus japonicus HOM05D005150 ORTHO05D006070 6.7e-14 80.9 110 38.2
Ciclev10017035m.g Citrus clementina HOM05D005150 ORTHO05D006070 8.8e-14 80.5 103 45.6
Glyma.13G073800 Glycine max HOM05D005150 ORTHO05D006070 8.8e-14 80.5 114 38.6
CSS0010457 Camellia sinensis var. sinensis HOM05D005150 ORTHO05D006070 1.1e-13 80.1 112 41.1
CSS0040672 Camellia sinensis var. sinensis HOM05D005150 ORTHO05D006070 1.1e-13 80.1 112 41.1
LjContig00564g0005952 Lotus japonicus HOM05D005150 ORTHO05D006070 1.5e-13 79.7 111 39.6
Aqoxy1G04044 Aquilegia oxysepala HOM05D005150 ORTHO05D006070 2.0e-13 79.3 113 38.9
Sopen07g002670 Solanum pennellii HOM05D005150 ORTHO05D006070 3.3e-13 78.6 93 46.2
ClCG02G009450 Citrullus lanatus HOM05D005150 ORTHO05D006070 4.4e-13 78.2 114 44.7
Solyc07g006590.1 Solanum lycopersicum HOM05D005150 ORTHO05D006070 4.4e-13 78.2 92 45.7
Medtr7g058970 Medicago truncatula HOM05D005150 ORTHO05D006070 5.7e-13 77.8 112 36.6
Lsat_1_v5_gn_9_105581 Lactuca sativa HOM05D005150 ORTHO05D006070 7.4e-13 77.4 113 38.1
Glyma.02G276100 Glycine max HOM05D005150 ORTHO05D006070 9.7e-13 77.0 112 42.9
TAR624G1342 Trochodendron aralioides HOM05D005150 ORTHO05D006070 9.7e-13 77.0 97 40.2
MELO3C019368.2 Cucumis melo HOM05D005150 ORTHO05D006070 1.7e-12 76.3 114 41.2
Duzib138G1375 Durio zibethinus HOM05D005150 ORTHO05D006070 1.7e-12 76.3 104 40.4
ECA240G3606 Erigeron canadensis HOM05D005150 ORTHO05D006070 1.7e-12 76.3 114 36.8
Lsat_1_v5_gn_7_95641 Lactuca sativa HOM05D005150 ORTHO05D006070 1.7e-12 76.3 114 41.2
Ah.14g082900 Amaranthus hybridus HOM05D005150 ORTHO05D006070 2.2e-12 75.9 117 39.3
DCAR_021114 Daucus carota HOM05D005150 ORTHO05D006070 2.2e-12 75.9 99 47.5
TPR.G12632 Trifolium pratense HOM05D005150 ORTHO05D006070 2.2e-12 75.9 97 40.2
Rhsim04G0044800 Rhododendron simsii HOM05D005150 ORTHO05D006070 2.8e-12 75.5 110 41.8
Lsat_1_v5_gn_5_124661 Lactuca sativa HOM05D005150 ORTHO05D006070 3.7e-12 75.1 112 40.2
Lalb_Chr19g0125521 Lupinus albus HOM05D005150 ORTHO05D006070 3.7e-12 75.1 112 37.5
Oeu040478.2 Olea europaea HOM05D005150 ORTHO05D006070 4.8e-12 74.7 114 42.1
TAR629G0945 Trochodendron aralioides HOM05D005150 ORTHO05D006070 6.3e-12 74.3 99 41.4
HanXRQChr03g0075721 Helianthus annuus HOM05D005150 ORTHO05D006070 1.1e-11 73.6 112 41.1
Lalb_Chr04g0249481 Lupinus albus HOM05D005150 ORTHO05D006070 1.1e-11 73.6 51 56.9
COL.COLO4_25851 Corchorus olitorius HOM05D005150 ORTHO05D006070 1.4e-11 73.2 51 58.8
TPR.G14637 Trifolium pratense HOM05D005150 ORTHO05D006070 1.4e-11 73.2 104 40.4
HanXRQChr17g0535431 Helianthus annuus HOM05D005150 ORTHO05D006070 2.4e-11 72.4 107 42.1
EL10Ac9g22759 Beta vulgaris HOM05D005150 ORTHO05D006070 4.1e-11 71.6 119 37.0
HanXRQChr04g0126761 Helianthus annuus HOM05D005150 ORTHO05D006070 5.3e-11 71.2 100 41.0
Medtr5g088550 Medicago truncatula HOM05D005150 ORTHO05D006070 9.1e-11 70.5 108 39.8
Lj1g0017552 Lotus japonicus HOM05D005150 ORTHO05D006070 1.2e-10 70.1 94 39.4
AUR62017541 Chenopodium quinoa HOM05D005150 ORTHO05D006070 1.6e-10 69.7 117 37.6
Dinv07836 Davidia involucrata HOM05D005150 ORTHO05D006070 1.6e-10 69.7 103 39.8
AUR62015079 Chenopodium quinoa HOM05D005150 ORTHO05D006070 2.0e-10 69.3 117 37.6
PSO675G4632 Papaver somniferum HOM05D005150 ORTHO05D006070 7.7e-10 67.4 114 33.3
AUR62005176 Chenopodium quinoa HOM05D005150 ORTHO05D006070 2.2e-09 65.9 116 37.1
Oeu012338.1 Olea europaea HOM05D005150 ORTHO05D006070 2.2e-09 65.9 53 56.6
AUR62000791 Chenopodium quinoa HOM05D005150 ORTHO05D006070 2.9e-09 65.5 116 38.8
TWI36G0863 Tripterygium wilfordii HOM05D005150 ORTHO05D006070 2.9e-09 65.5 113 38.1
Ah.01g002180 Amaranthus hybridus HOM05D005150 ORTHO05D006070 3.8e-09 65.1 105 35.2
Eucgr.K00667 Eucalyptus grandis HOM05D005150 ORTHO05D006070 5.0e-09 64.7 116 39.7
Sc21g0000930 Simmondsia chinensis HOM05D005150 ORTHO05D006070 1.5e-08 63.2 110 33.6
ECA236G2208 Erigeron canadensis HOM05D005150 ORTHO05D006070 3.2e-08 62.0 107 38.3
vmacro12128 Vaccinium macrocarpon HOM05D005150 ORTHO05D006070 4.2e-08 61.6 115 35.7
PSO541G4821 Papaver somniferum HOM05D005150 ORTHO05D006070 7.2e-08 60.8 114 31.6
FAN14G4944 Fragaria x ananassa HOM05D008097 ORTHO05D006070 9.4e-08 60.5 38 57.9
Sed0014772 Sechium edule HOM05D005150 ORTHO05D006070 1.2e-07 60.1 103 40.8
Nitab4.5_0000244g0100 Nicotiana tabacum HOM05D005150 ORTHO05D006070 2.1e-07 59.3 80 40.0
Sc06g0009750 Simmondsia chinensis HOM05D005150 ORTHO05D006070 1.0e-06 57.0 111 36.9
EL10Ac4g09390 Beta vulgaris HOM05D005150 ORTHO05D006070 1.4e-06 56.6 106 34.9


User provided reference genes

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