Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp7g05570 Schrenkiella parvula HOM05D006489 ORTHO05D007556 6.7e-273 943.7 599 100.0
C04p43850 Brassica napus HOM05D006489 ORTHO05D007556 1.1e-190 670.6 604 69.5
BcaC02g09533 Brassica carinata HOM05D006489 ORTHO05D007556 7.1e-190 667.9 604 69.9
BolC4t25966H Brassica oleracea HOM05D006489 ORTHO05D007556 7.1e-190 667.9 604 69.9
A04p10340 Brassica napus HOM05D006489 ORTHO05D007556 6.7e-188 661.4 605 69.8
BcaB06g27045 Brassica carinata HOM05D006489 ORTHO05D007556 6.5e-151 538.5 604 60.8
BraA04t16706Z Brassica rapa HOM05D006489 ORTHO05D007556 3.3e-134 483.0 604 55.3
CARHR096250 Cardamine hirsuta HOM05D006489 ORTHO05D007556 3.9e-119 433.0 635 49.3
Thhalv10028177m.g Eutrema salsugineum HOM05D006489 ORTHO05D007556 5.1e-119 432.6 579 51.5
AL3G34270 Arabidopsis lyrata HOM05D006489 ORTHO05D007556 2.3e-116 423.7 634 49.2
AT3G20490 Arabidopsis thaliana HOM05D006489 ORTHO05D007556 3.4e-115 419.9 638 48.9
Carub.0003s2045 Capsella rubella HOM05D006489 ORTHO05D007556 2.2e-114 417.2 615 50.2
Aa31LG8G7280 Aethionema arabicum HOM05D006489 ORTHO05D007556 4.0e-100 369.8 622 45.7
THA.LOC104817868 Tarenaya hassleriana HOM05D006489 ORTHO05D007556 1.3e-66 258.5 612 37.7
COL.COLO4_19762 Corchorus olitorius HOM05D006489 ORTHO05D007556 8.5e-42 176.0 257 47.5
Ciclev10008166m.g Citrus clementina HOM05D006489 ORTHO05D007556 1.1e-41 175.6 255 49.0
TWI15G0832 Tripterygium wilfordii HOM05D006489 ORTHO05D007556 5.5e-41 173.3 647 30.4
Gohir.D08G030200 Gossypium hirsutum HOM05D006489 ORTHO05D007556 1.4e-39 168.7 261 46.0
Atru.chr2.3342 Acer truncatum HOM05D006489 ORTHO05D007556 2.3e-39 167.9 268 42.5
Gorai.004G027700 Gossypium raimondii HOM05D006489 ORTHO05D007556 5.2e-39 166.8 261 45.6
Duzib213G0414 Durio zibethinus HOM05D006489 ORTHO05D007556 6.8e-39 166.4 633 31.1
Cpa.g.sc97.9 Carica papaya HOM05D006489 ORTHO05D007556 4.8e-37 160.2 632 29.6
TAR627G0165 Trochodendron aralioides HOM05D006489 ORTHO05D007556 8.3e-37 159.5 641 28.5
Potri.011G139200 Populus trichocarpa HOM05D006489 ORTHO05D007556 3.1e-36 157.5 244 44.3
Medtr5g092580 Medicago truncatula HOM05D006489 ORTHO05D007556 3.5e-35 154.1 695 30.1
Aqoxy1G03602 Aquilegia oxysepala HOM05D006489 ORTHO05D007556 1.3e-34 152.1 282 37.2
ECA240G0124 Erigeron canadensis HOM05D006489 ORTHO05D007556 1.7e-34 151.8 637 28.4
VMungo0647G1504 Vigna mungo HOM05D006489 ORTHO05D007556 1.7e-34 151.8 683 28.7
HanXRQChr03g0076541 Helianthus annuus HOM05D006489 ORTHO05D007556 3.8e-34 150.6 248 39.5
Peaxi162Scf00964g00023 Petunia axillaris HOM05D006489 ORTHO05D007556 1.1e-33 149.1 612 26.6
Sabra11G0125100 Salix brachista HOM05D006489 ORTHO05D007556 1.1e-33 149.1 654 29.2
Actinidia35341 Actinidia chinensis HOM05D006489 ORTHO05D007556 1.9e-33 148.3 638 28.8
Gohir.A08G019600 Gossypium hirsutum HOM05D006489 ORTHO05D007556 2.5e-33 147.9 260 42.7
QL08p010454 Quercus lobata HOM05D006489 ORTHO05D007556 7.2e-33 146.4 666 29.7
CSS0036232 Camellia sinensis var. sinensis HOM05D006489 ORTHO05D007556 1.0e-31 142.5 579 28.3
HanXRQChr08g0220561 Helianthus annuus HOM05D006489 ORTHO05D007556 1.4e-31 142.1 629 27.8
vmacro09717 Vaccinium macrocarpon HOM05D006489 ORTHO05D007556 1.4e-31 142.1 635 28.7
CSS0017234 Camellia sinensis var. sinensis HOM05D006489 ORTHO05D007556 3.0e-31 141.0 579 28.2
Lsat_1_v5_gn_9_94040 Lactuca sativa HOM05D006489 ORTHO05D007556 5.2e-31 140.2 243 40.3
Haze_09673 Corylus avellana HOM05D006489 ORTHO05D007556 6.8e-31 139.8 694 26.9
PGSC0003DMG400022321 Solanum tuberosum HOM05D006489 ORTHO05D007556 1.5e-30 138.7 263 38.4
Sc03g0008610 Simmondsia chinensis HOM05D006489 ORTHO05D007556 2.0e-30 138.3 236 39.8
Phvul.008G267300 Phaseolus vulgaris HOM05D006489 ORTHO05D007556 3.4e-30 137.5 675 27.9
Cc09_g09720 Coffea canephora HOM05D006489 ORTHO05D007556 5.7e-30 136.7 255 38.0
Oeu062694.1 Olea europaea HOM05D006489 ORTHO05D007556 5.7e-30 136.7 229 41.5
Solyc07g064570.3 Solanum lycopersicum HOM05D006489 ORTHO05D007556 7.5e-30 136.3 228 42.1
PGR083G1541 Punica granatum HOM05D006489 ORTHO05D007556 9.8e-30 136.0 242 40.9
Sopen07g032750 Solanum pennellii HOM05D006489 ORTHO05D007556 9.8e-30 136.0 265 40.0
ATR0752G219 Amborella trichopoda HOM05D006489 ORTHO05D007556 1.7e-29 135.2 254 38.2
Eucgr.F00766 Eucalyptus grandis HOM05D006489 ORTHO05D007556 1.7e-29 135.2 249 38.2
TPR.G1166 Trifolium pratense HOM05D006489 ORTHO05D007556 4.9e-29 133.7 672 27.8
CAN.G337.129 Capsicum annuum HOM05D006489 ORTHO05D007556 6.3e-29 133.3 234 40.2
CiPaw.12G129400 Carya illinoinensis HOM05D006489 ORTHO05D007556 6.3e-29 133.3 681 26.6
Lalb_Chr17g0348451 Lupinus albus HOM05D006489 ORTHO05D007556 8.3e-29 132.9 591 29.6
GSVIVG01037644001 Vitis vinifera HOM05D006489 ORTHO05D007556 8.3e-29 132.9 272 35.7
Glyma.02G290600 Glycine max HOM05D006489 ORTHO05D007556 1.1e-28 132.5 682 28.0
Hund23251 Selenicereus undatus HOM05D006489 ORTHO05D007556 1.1e-28 132.5 258 38.8
Atru.BG.151.p Acer truncatum HOM05D006489 ORTHO05D007556 1.4e-28 132.1 221 40.3
RhsimUnG0250900 Rhododendron simsii HOM05D006489 ORTHO05D007556 1.4e-28 132.1 253 39.5
MBI02_g07154_MAGBIO Magnolia biondii HOM05D006489 ORTHO05D007556 1.8e-28 131.7 294 36.1
MBI18_g45561_MAGBIO Magnolia biondii HOM05D006489 ORTHO05D007556 7.0e-28 129.8 250 34.8
Medtr6g033325 Medicago truncatula HOM05D006489 ORTHO05D007556 1.6e-27 128.6 638 28.8
Prupe.4G212300 Prunus persica HOM05D006489 ORTHO05D007556 4.5e-27 127.1 680 26.8
Migut.M01768 Erythranthe guttata HOM05D006489 ORTHO05D007556 5.9e-27 126.7 227 37.9
TPR.G36685 Trifolium pratense HOM05D006489 ORTHO05D007556 5.9e-27 126.7 641 27.6
DCAR_022559 Daucus carota HOM05D006489 ORTHO05D007556 1.0e-26 125.9 281 36.3
AUR62015766 Chenopodium quinoa HOM05D006489 ORTHO05D007556 1.3e-26 125.6 237 37.1
Dinv22265 Davidia involucrata HOM05D006489 ORTHO05D007556 1.3e-26 125.6 265 35.5
Cfa020351 Carpinus fangiana HOM05D006489 ORTHO05D007556 2.3e-26 124.8 720 26.4
Ca_06317_v3 Cicer arietinum L. HOM05D006489 ORTHO05D007556 2.3e-26 124.8 673 26.4
LjContig00272g0011286 Lotus japonicus HOM05D006489 ORTHO05D007556 3.8e-26 124.0 670 27.2
PSO675G7358 Papaver somniferum HOM05D006489 ORTHO05D007556 5.0e-26 123.6 240 38.3
Manes.03G129000 Manihot esculenta HOM05D006489 ORTHO05D007556 6.6e-26 123.2 651 27.6
Glyma.14G024100 Glycine max HOM05D006489 ORTHO05D007556 8.6e-26 122.9 290 34.8
Ca_25386_v3 Cicer arietinum L. HOM05D006489 ORTHO05D007556 4.3e-25 120.6 667 26.5
MELO3C013233.2 Cucumis melo HOM05D006489 ORTHO05D007556 4.3e-25 120.6 318 33.6
HPP92_013323 Vanilla planifolia HOM05D006489 ORTHO05D007556 4.3e-25 120.6 284 34.5
Hma1.2p1_1162F.1_g262610 Hydrangea macrophylla HOM05D006489 ORTHO05D007556 2.8e-24 117.9 643 26.6
arahy.Tifrunner.gnm1.ann1.I0Q6ZZ Arachis hypogaea HOM05D006489 ORTHO05D007556 1.4e-23 115.5 355 31.0
arahy.Tifrunner.gnm1.ann1.X6VDEX Arachis hypogaea HOM05D006489 ORTHO05D007556 1.2e-22 112.5 342 31.9
Psat2g011040 Pisum sativum HOM05D006489 ORTHO05D007556 2.0e-22 111.7 671 26.7
Sed0018772 Sechium edule HOM05D006489 ORTHO05D007556 2.0e-22 111.7 280 33.9
Psat1g097920 Pisum sativum HOM05D006489 ORTHO05D007556 2.6e-22 111.3 662 29.5
FAN21G0022 Fragaria x ananassa HOM05D006489 ORTHO05D007556 3.4e-22 110.9 512 27.5
SGA_v2.0_scaffold80G25948 Striga asiatica HOM05D006489 ORTHO05D007556 2.2e-21 108.2 237 35.4
Nitab4.5_0001913g0140 Nicotiana tabacum HOM05D006489 ORTHO05D007556 2.9e-21 107.8 578 27.5
EL10Ac4g07823 Beta vulgaris HOM05D006489 ORTHO05D007556 4.9e-21 107.1 230 35.2
ClCG05G014300 Citrullus lanatus HOM05D006489 ORTHO05D007556 4.9e-21 107.1 262 32.4
Nitab4.5_0011175g0010 Nicotiana tabacum HOM05D006489 ORTHO05D007556 1.1e-20 105.9 579 26.8
FAN25G3282 Fragaria x ananassa HOM05D006489 ORTHO05D007556 1.4e-20 105.5 815 25.2
MD03G1201600 Malus domestica HOM05D006489 ORTHO05D007556 1.4e-20 105.5 282 33.7
Zm00001eb431300 Zea mays HOM05D006489 ORTHO05D007556 1.4e-20 105.5 208 37.0
Lalb_Chr10g0106941 Lupinus albus HOM05D006489 ORTHO05D007556 2.4e-20 104.8 620 27.4
CANSAT11G2482 Cannabis sativa HOM05D006489 ORTHO05D007556 3.2e-20 104.4 306 30.1
CDE05G3553 Ceratophyllum demersum HOM05D006489 ORTHO05D007556 5.4e-20 103.6 640 25.6
CDE02G1695 Ceratophyllum demersum HOM05D006489 ORTHO05D007556 2.0e-19 101.7 641 25.7
Sed0021471 Sechium edule HOM05D006489 ORTHO05D007556 1.3e-18 99.0 284 32.7
FvH4_3g22630 Fragaria vesca HOM05D006489 ORTHO05D007556 5.0e-18 97.1 516 26.4
HanXRQChr11g0337701 Helianthus annuus HOM05D006489 ORTHO05D007556 1.9e-17 95.1 165 41.2
SEGI_05401 Sequoiadendron giganteum HOM05D006489 ORTHO05D007556 4.3e-17 94.0 257 34.2
RcHm_v2.0_Chr5g0039401 Rosa chinensis HOM05D006489 ORTHO05D007556 5.6e-17 93.6 342 27.5
BcaB04g18327 Brassica carinata HOM05D000073 ORTHO05D000033 1.2e-16 92.4 57 82.5
Os04g0625100 Oryza sativa ssp. japonica HOM05D006489 ORTHO05D007556 2.1e-16 91.7 222 33.3
Nn1g03547 Nelumbo nucifera HOM05D006489 ORTHO05D007556 2.3e-15 88.2 634 24.6
FAN16G1490 Fragaria x ananassa HOM05D006489 ORTHO05D007556 4.0e-15 87.4 261 36.4
Lsat_1_v5_gn_7_108561 Lactuca sativa HOM05D006489 ORTHO05D007556 8.9e-15 86.3 167 37.1
PSO541G0970 Papaver somniferum HOM05D006489 ORTHO05D007556 8.9e-15 86.3 199 33.7
Hma1.2p1_1162F.1_g262600 Hydrangea macrophylla HOM05D006489 ORTHO05D007556 1.5e-14 85.5 589 24.3
ECA236G1547 Erigeron canadensis HOM05D006489 ORTHO05D007556 2.0e-14 85.1 199 33.2
Lj1A872T56 Lonicera japonica HOM05D006489 ORTHO05D007556 5.8e-14 83.6 196 34.2
Thecc.07G037900 Theobroma cacao HOM05D006489 ORTHO05D007556 7.5e-14 83.2 514 25.3
CsaV3_7G021220 Cucumis sativus L. HOM05D006489 ORTHO05D007556 1.7e-13 82.0 249 30.5
AUR62020449 Chenopodium quinoa HOM05D006489 ORTHO05D007556 6.4e-13 80.1 629 24.5
unitig_62.g23281 Utricularia gibba HOM05D008272 ORTHO05D010429 1.4e-12 79.0 238 32.4
Lj8A169G92 Lonicera japonica HOM05D006489 ORTHO05D007556 1.1e-09 69.3 61 60.7
Psat0s2568g0040 Pisum sativum HOM05D006489 ORTHO05D007556 2.8e-08 64.7 102 42.2


User provided reference genes

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