Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp7g05490 Schrenkiella parvula HOM05D003795 ORTHO05D004308 5.8e-302 1040.4 654 100.0
AL7G45860 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 3.2e-199 699.1 672 74.1
AT5G37010 Arabidopsis thaliana HOM05D003795 ORTHO05D004308 3.3e-196 689.1 674 73.1
Thhalv10018248m.g Eutrema salsugineum HOM05D003795 ORTHO05D004308 3.1e-194 682.6 680 75.0
CARHR216000 Cardamine hirsuta HOM05D003795 ORTHO05D004308 3.9e-189 665.6 679 65.1
C04p43990 Brassica napus HOM05D003795 ORTHO05D004308 4.3e-180 635.6 667 71.8
BolC4t25981H Brassica oleracea HOM05D003795 ORTHO05D004308 4.7e-179 632.1 671 69.4
BcaC02g09547 Brassica carinata HOM05D003795 ORTHO05D004308 2.0e-177 626.7 667 71.5
BcaB06g27061 Brassica carinata HOM05D003795 ORTHO05D004308 6.2e-171 605.1 663 62.4
Carub.0007s3228 Capsella rubella HOM05D003795 ORTHO05D004308 9.6e-164 581.3 685 67.3
Aa31LG2G10060 Aethionema arabicum HOM05D003795 ORTHO05D004308 2.4e-159 566.6 702 63.5
THA.LOC104805668 Tarenaya hassleriana HOM05D003795 ORTHO05D004308 1.0e-149 534.6 717 62.1
A04p10490 Brassica napus HOM05D003795 ORTHO05D004308 4.5e-145 519.2 668 65.7
Aa31LG9G17690 Aethionema arabicum HOM05D003795 ORTHO05D004308 4.2e-127 459.5 684 56.7
Manes.01G125700 Manihot esculenta HOM05D003795 ORTHO05D004308 3.3e-71 273.9 731 39.3
Duzib138G1939 Durio zibethinus HOM05D003795 ORTHO05D004308 9.5e-71 272.3 699 38.6
Thecc.04G056400 Theobroma cacao HOM05D003795 ORTHO05D004308 1.4e-69 268.5 741 40.2
Potri.012G145200 Populus trichocarpa HOM05D003795 ORTHO05D004308 5.2e-69 266.5 784 39.2
Sabra12G0109200 Salix brachista HOM05D003795 ORTHO05D004308 2.6e-68 264.2 627 40.8
CARHR057540 Cardamine hirsuta HOM05D003795 ORTHO05D004308 7.6e-68 262.7 590 48.5
AL2G22840 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 9.9e-68 262.3 587 44.5
AL6G17260 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 4.2e-66 256.9 227 65.6
Sp5g20650 Schrenkiella parvula HOM05D003795 ORTHO05D004308 9.2e-66 255.8 606 41.4
Potri.015G147900 Populus trichocarpa HOM05D003795 ORTHO05D004308 1.2e-65 255.4 729 43.2
Sabra15G0156700 Salix brachista HOM05D003795 ORTHO05D004308 4.6e-65 253.4 721 39.0
Cpa.g.sc108.20 Carica papaya HOM05D003795 ORTHO05D004308 1.3e-64 251.9 773 39.6
AT1G65710 Arabidopsis thaliana HOM05D003795 ORTHO05D004308 1.1e-63 248.8 592 45.1
Gohir.A11G170300 Gossypium hirsutum HOM05D003795 ORTHO05D004308 1.9e-63 248.1 700 40.1
TWI74G0163 Tripterygium wilfordii HOM05D003795 ORTHO05D004308 5.6e-63 246.5 693 42.9
Manes.02G083300 Manihot esculenta HOM05D003795 ORTHO05D004308 3.6e-62 243.8 753 36.3
Haze_14040 Corylus avellana HOM05D003795 ORTHO05D004308 1.5e-60 238.4 787 40.4
Carub.0002s1153 Capsella rubella HOM05D003795 ORTHO05D004308 1.3e-59 235.3 606 39.6
Gohir.D11G177300 Gossypium hirsutum HOM05D003795 ORTHO05D004308 2.2e-59 234.6 695 39.1
TWI77G0024 Tripterygium wilfordii HOM05D003795 ORTHO05D004308 1.9e-58 231.5 702 40.5
Gorai.007G189400 Gossypium raimondii HOM05D003795 ORTHO05D004308 6.0e-57 226.5 694 38.8
Thhalv10018468m.g Eutrema salsugineum HOM05D003795 ORTHO05D004308 1.7e-56 224.9 598 41.5
Phvul.008G243000 Phaseolus vulgaris HOM05D003795 ORTHO05D004308 1.9e-55 221.5 698 33.5
QL02p056567 Quercus lobata HOM05D003795 ORTHO05D004308 8.1e-54 216.1 732 36.7
CiPaw.03G010000 Carya illinoinensis HOM05D003795 ORTHO05D004308 5.3e-53 213.4 796 37.3
QL02p055515 Quercus lobata HOM05D003795 ORTHO05D004308 9.0e-53 212.6 755 37.4
CSS0049356 Camellia sinensis var. sinensis HOM05D003795 ORTHO05D004308 1.2e-52 212.2 759 37.5
VMungo0647G0124 Vigna mungo HOM05D003795 ORTHO05D004308 1.5e-52 211.8 734 34.2
FAN18G0662 Fragaria x ananassa HOM05D003795 ORTHO05D004308 2.6e-52 211.1 739 33.3
FAN18G1276 Fragaria x ananassa HOM05D003795 ORTHO05D004308 2.6e-52 211.1 739 33.3
FvH4_5g39710 Fragaria vesca HOM05D003795 ORTHO05D004308 5.8e-52 209.9 739 33.2
Lj2A509T28 Lonicera japonica HOM05D003795 ORTHO05D004308 7.6e-52 209.5 740 38.8
FAN08G2134 Fragaria x ananassa HOM05D003795 ORTHO05D004308 1.7e-51 208.4 706 33.6
CANSAT78G1023 Cannabis sativa HOM05D003795 ORTHO05D004308 2.9e-51 207.6 737 40.6
Phvul.006G083400 Phaseolus vulgaris HOM05D003795 ORTHO05D004308 3.8e-51 207.2 703 40.0
LjContig00141g0025814 Lotus japonicus HOM05D003795 ORTHO05D004308 8.4e-51 206.1 712 38.2
Dinv28269 Davidia involucrata HOM05D003795 ORTHO05D004308 1.9e-50 204.9 744 37.5
COL.COLO4_13440 Corchorus olitorius HOM05D003795 ORTHO05D004308 2.4e-50 204.5 546 38.3
RcHm_v2.0_Chr7g0242011 Rosa chinensis HOM05D003795 ORTHO05D004308 3.2e-50 204.1 712 36.2
Peaxi162Scf00344g00199 Petunia axillaris HOM05D003795 ORTHO05D004308 7.1e-50 203.0 675 37.6
HanXRQChr14g0443551 Helianthus annuus HOM05D003795 ORTHO05D004308 9.3e-50 202.6 692 35.7
arahy.Tifrunner.gnm1.ann1.SLU9BZ Arachis hypogaea HOM05D003795 ORTHO05D004308 4.6e-49 200.3 716 36.7
Oeu060824.1 Olea europaea HOM05D003795 ORTHO05D004308 4.6e-49 200.3 631 38.7
Glyma.14G207900 Glycine max HOM05D003795 ORTHO05D004308 1.0e-48 199.1 739 35.2
Cc07_g12620 Coffea canephora HOM05D003795 ORTHO05D004308 1.3e-48 198.7 748 40.4
VMungo0540G0009 Vigna mungo HOM05D003795 ORTHO05D004308 1.3e-48 198.7 718 39.3
Sed0021341 Sechium edule HOM05D003795 ORTHO05D004308 3.9e-48 197.2 712 36.0
DCAR_014135 Daucus carota HOM05D003795 ORTHO05D004308 8.7e-48 196.1 685 38.1
Glyma.11G202800 Glycine max HOM05D003795 ORTHO05D004308 3.3e-47 194.1 714 35.3
arahy.Tifrunner.gnm1.ann1.686QXT Arachis hypogaea HOM05D003795 ORTHO05D004308 5.6e-47 193.4 722 36.0
CAN.G809.93 Capsicum annuum HOM05D003795 ORTHO05D004308 7.4e-47 193.0 744 37.9
Ca_05735_v3 Cicer arietinum L. HOM05D003795 ORTHO05D004308 1.1e-45 189.1 630 35.9
FAN04G0804 Fragaria x ananassa HOM05D003795 ORTHO05D004308 1.4e-45 188.7 675 33.9
Hund22224 Selenicereus undatus HOM05D003795 ORTHO05D004308 1.4e-45 188.7 732 42.1
Rhsim10G0186600 Rhododendron simsii HOM05D003795 ORTHO05D004308 1.8e-45 188.3 711 38.8
Oeu012502.2 Olea europaea HOM05D003795 ORTHO05D004308 3.1e-45 187.6 706 33.0
CsaV3_5G024360 Cucumis sativus L. HOM05D003795 ORTHO05D004308 5.3e-45 186.8 737 35.7
Medtr5g076140 Medicago truncatula HOM05D003795 ORTHO05D004308 5.3e-45 186.8 622 38.1
Migut.K01203 Erythranthe guttata HOM05D003795 ORTHO05D004308 6.9e-45 186.4 665 41.7
PGSC0003DMG400019727 Solanum tuberosum HOM05D003795 ORTHO05D004308 9.0e-45 186.0 678 33.6
Glyma.18G048000 Glycine max HOM05D003795 ORTHO05D004308 1.5e-44 185.3 703 35.8
Psat2g048640 Pisum sativum HOM05D003795 ORTHO05D004308 3.4e-44 184.1 636 34.3
vmacro20445 Vaccinium macrocarpon HOM05D003795 ORTHO05D004308 3.4e-44 184.1 731 39.9
TPR.G15394 Trifolium pratense HOM05D003795 ORTHO05D004308 4.5e-44 183.7 690 34.9
MSTRG.15619 Avicennia marina HOM05D003795 ORTHO05D004308 5.8e-44 183.3 744 38.7
Ciclev10011149m.g Citrus clementina HOM05D003795 ORTHO05D004308 5.8e-44 183.3 745 35.2
ClCG01G008410 Citrullus lanatus HOM05D003795 ORTHO05D004308 7.6e-44 183.0 728 34.1
SalBow5G4136 Salvia bowleyana HOM05D003795 ORTHO05D004308 7.6e-44 183.0 674 34.7
Nitab4.5_0000483g0170 Nicotiana tabacum HOM05D003795 ORTHO05D004308 1.3e-43 182.2 714 32.8
Sabra16G0322500 Salix brachista HOM05D003795 ORTHO05D004308 1.7e-43 181.8 357 43.7
Sopen02g026080 Solanum pennellii HOM05D003795 ORTHO05D004308 2.5e-42 177.9 727 36.2
Lalb_Chr18g0053951 Lupinus albus HOM05D003795 ORTHO05D004308 5.5e-42 176.8 651 31.8
Ca_15099_v3 Cicer arietinum L. HOM05D003795 ORTHO05D004308 7.1e-42 176.4 681 35.4
BcaB05g24123 Brassica carinata HOM05D003795 ORTHO05D004308 9.3e-42 176.0 382 43.7
Nn4g24995 Nelumbo nucifera HOM05D003795 ORTHO05D004308 9.3e-42 176.0 653 38.7
Solyc02g081440.4 Solanum lycopersicum HOM05D003795 ORTHO05D004308 9.3e-42 176.0 730 37.1
Lsat_1_v5_gn_2_72041 Lactuca sativa HOM05D003795 ORTHO05D004308 2.1e-41 174.9 695 39.4
GSVIVG01033197001 Vitis vinifera HOM05D003795 ORTHO05D004308 4.6e-41 173.7 669 32.0
PSO063G2224 Papaver somniferum HOM05D003795 ORTHO05D004308 2.3e-40 171.4 702 31.9
Ah.04g162800 Amaranthus hybridus HOM05D003795 ORTHO05D004308 6.7e-40 169.9 709 34.7
Nitab4.5_0012787g0030 Nicotiana tabacum HOM05D003795 ORTHO05D004308 1.1e-39 169.1 715 31.6
A08p00830 Brassica napus HOM05D003795 ORTHO05D004308 1.9e-39 168.3 573 35.6
Medtr3g063210 Medicago truncatula HOM05D003795 ORTHO05D004308 1.9e-39 168.3 695 31.9
Eucgr.J01649 Eucalyptus grandis HOM05D003795 ORTHO05D004308 5.6e-39 166.8 455 36.0
MELO3C025107.2 Cucumis melo HOM05D003795 ORTHO05D004308 7.4e-39 166.4 730 33.0
Lj6g0018352 Lotus japonicus HOM05D003795 ORTHO05D004308 7.4e-39 166.4 680 32.9
SGA_v2.0_scaffold199G41250 Striga asiatica HOM05D003795 ORTHO05D004308 3.7e-38 164.1 691 33.9
BcaC01g01477 Brassica carinata HOM05D003795 ORTHO05D004308 8.2e-38 162.9 589 36.3
C03p92420 Brassica napus HOM05D003795 ORTHO05D004308 8.2e-38 162.9 589 36.3
MSTRG.3665 Avicennia marina HOM05D003795 ORTHO05D004308 1.8e-37 161.8 744 40.5
BolC3t21550H Brassica oleracea HOM05D003795 ORTHO05D004308 4.0e-37 160.6 578 37.4
PSO782G2347 Papaver somniferum HOM05D003795 ORTHO05D004308 1.2e-36 159.1 703 33.9
Psat5g144840 Pisum sativum HOM05D003795 ORTHO05D004308 7.6e-36 156.4 584 33.6
Oeu041416.1 Olea europaea HOM05D003795 ORTHO05D004308 1.7e-35 155.2 636 31.9
Glyma.02G239000 Glycine max HOM05D003795 ORTHO05D004308 2.9e-35 154.5 704 31.1
BraA08t32141Z Brassica rapa HOM05D003795 ORTHO05D004308 8.4e-35 152.9 585 41.0
unitig_0.g1678 Utricularia gibba HOM05D003795 ORTHO05D004308 8.4e-35 152.9 653 30.8
Nn4g24993 Nelumbo nucifera HOM05D003795 ORTHO05D004308 7.1e-34 149.8 642 36.3
Ah.06g191370 Amaranthus hybridus HOM05D003795 ORTHO05D004308 2.1e-33 148.3 718 34.1
TPR.G37433 Trifolium pratense HOM05D003795 ORTHO05D004308 2.7e-33 147.9 680 31.3
Sc20g0000860 Simmondsia chinensis HOM05D003795 ORTHO05D004308 3.5e-33 147.5 787 36.8
MD12G1074700 Malus domestica HOM05D003795 ORTHO05D004308 7.9e-33 146.4 671 30.1
Atru.chr1.2190 Acer truncatum HOM05D003795 ORTHO05D004308 1.8e-32 145.2 660 39.1
BcaB04g16989 Brassica carinata HOM05D003795 ORTHO05D004308 6.7e-32 143.3 605 36.7
unitig_748.g7017 Utricularia gibba HOM05D003795 ORTHO05D004308 1.1e-31 142.5 659 30.7
EL10Ac4g08850 Beta vulgaris HOM05D003795 ORTHO05D004308 3.3e-31 141.0 733 39.0
Os04g0528600 Oryza sativa ssp. japonica HOM05D003795 ORTHO05D004308 3.3e-31 141.0 626 32.4
ECA238G3337 Erigeron canadensis HOM05D003795 ORTHO05D004308 1.3e-30 139.0 628 34.1
Peaxi162Scf00784g00029 Petunia axillaris HOM05D003795 ORTHO05D004308 1.3e-30 139.0 630 34.6
PGR042G3398 Punica granatum HOM05D003795 ORTHO05D004308 9.0e-29 132.9 745 30.1
HanXRQChr12g0365641 Helianthus annuus HOM05D003795 ORTHO05D004308 2.0e-28 131.7 652 29.6
Hma1.2p1_0034F.1_g021500 Hydrangea macrophylla HOM05D003795 ORTHO05D004308 2.2e-27 128.3 783 34.9
Hma1.2p1_0085F.1_g043870 Hydrangea macrophylla HOM05D003795 ORTHO05D004308 2.9e-27 127.9 743 33.1
Aa31LG1G18520 Aethionema arabicum HOM05D003795 ORTHO05D026452 4.2e-26 124.0 109 73.4
PGSC0003DMG402019715 Solanum tuberosum HOM05D003795 ORTHO05D004308 2.7e-25 121.3 229 41.9
unitig_748.g8624 Utricularia gibba HOM05D003795 ORTHO05D004308 6.1e-25 120.2 634 27.9
Dinv19094 Davidia involucrata HOM05D003795 ORTHO05D004308 1.8e-24 118.6 329 36.8
Aqoxy3G04352 Aquilegia oxysepala HOM05D003795 ORTHO05D004308 6.7e-24 116.7 769 26.8
MBI06_g17214_MAGBIO Magnolia biondii HOM05D003795 ORTHO05D004308 8.8e-24 116.3 608 27.8
Nitab4.5_0008083g0010 Nicotiana tabacum HOM05D003795 ORTHO05D004308 2.0e-23 115.2 691 30.1
Zm00001eb427110 Zea mays HOM05D003795 ORTHO05D004308 3.3e-23 114.4 671 28.3
Solyc02g036460.3 Solanum lycopersicum HOM05D003795 ORTHO05D004308 4.3e-23 114.0 696 29.7
CAN.G304.8 Capsicum annuum HOM05D003795 ORTHO05D004308 2.2e-22 111.7 649 29.1
Nitab4.5_0002297g0070 Nicotiana tabacum HOM05D003795 ORTHO05D004308 2.8e-22 111.3 682 31.1
Sopen02g011820 Solanum pennellii HOM05D003795 ORTHO05D004308 4.8e-22 110.5 696 29.6
Zm00001eb185660 Zea mays HOM05D003795 ORTHO05D004308 6.3e-22 110.2 527 29.6
Zm00001eb075920 Zea mays HOM05D003795 ORTHO05D004308 1.4e-21 109.0 545 28.4
PGSC0003DMG400021472 Solanum tuberosum HOM05D003795 ORTHO05D004308 5.3e-21 107.1 709 30.2
C03p77490 Brassica napus HOM05D011073 ORTHO05D013800 9.1e-21 106.3 102 70.6
BcaB04g20778 Brassica carinata HOM05D011073 ORTHO05D013800 7.7e-20 103.2 174 52.9
AUR62017269 Chenopodium quinoa HOM05D003795 ORTHO05D004308 7.7e-20 103.2 514 32.5
Aqoxy2G03712 Aquilegia oxysepala HOM05D003795 ORTHO05D004308 1.0e-19 102.8 299 31.1
C03p10570 Brassica napus HOM05D011073 ORTHO05D013800 2.5e-18 98.2 102 67.6
VMungo1215G2457 Vigna mungo HOM05D003795 ORTHO05D004308 5.5e-18 97.1 326 32.5
TAR629G1700 Trochodendron aralioides HOM05D003795 ORTHO05D004308 2.1e-17 95.1 448 31.7
HPP92_013140 Vanilla planifolia HOM05D003795 ORTHO05D004308 1.4e-16 92.4 633 27.6
Aa31LG1G18490 Aethionema arabicum HOM05D003795 ORTHO05D004308 3.0e-16 91.3 61 78.7
Actinidia32996 Actinidia chinensis HOM05D003795 ORTHO05D004308 1.5e-15 89.0 401 41.6
BraA02t06724Z Brassica rapa HOM05D011073 ORTHO05D013800 3.3e-15 87.8 101 65.3
Lalb_Chr10g0103891 Lupinus albus HOM05D003795 ORTHO05D004308 3.7e-14 84.3 440 32.7
BraA06t25267Z Brassica rapa HOM05D003795 ORTHO05D026452 2.4e-13 81.6 73 71.2
AUR62010625 Chenopodium quinoa HOM05D003795 ORTHO05D004308 4.1e-13 80.9 238 42.4
BcaB07g34060 Brassica carinata HOM05D003795 ORTHO05D004308 2.6e-12 78.2 78 61.5
A05p19800 Brassica napus HOM05D011073 ORTHO05D013800 2.6e-12 78.2 243 44.4
A06p21800 Brassica napus HOM05D003795 ORTHO05D026452 2.6e-12 78.2 77 67.5
BraA05t20886Z Brassica rapa HOM05D003089 ORTHO05D001766 7.7e-12 76.6 244 45.5
A06p37820 Brassica napus HOM05D011073 ORTHO05D013800 6.5e-11 73.6 81 64.2
Peaxi162Scf00116g00915 Petunia axillaris HOM05D004744 ORTHO05D005655 8.5e-11 73.2 222 32.0
CDE08G0767 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 1.1e-10 72.8 656 25.6
Actinidia22883 Actinidia chinensis HOM05D003795 ORTHO05D004308 2.5e-10 71.6 642 29.3
VMungo1383G0923 Vigna mungo HOM05D003795 ORTHO05D004308 5.5e-10 70.5 95 46.3
BolC4t22963H Brassica oleracea HOM05D011073 ORTHO05D013800 9.4e-10 69.7 82 62.2
BolC9t54509H Brassica oleracea HOM05D011073 ORTHO05D013800 1.2e-09 69.3 97 57.7
Prupe.7G058800 Prunus persica HOM05D003795 ORTHO05D004308 1.2e-09 69.3 75 57.3
Sabra16G0322400 Salix brachista HOM05D003795 ORTHO05D004308 8.0e-09 66.6 82 53.7
AUR62010626 Chenopodium quinoa HOM05D003795 ORTHO05D004308 1.4e-08 65.9 166 36.7
Prupe.7G058700 Prunus persica HOM05D003795 ORTHO05D004308 1.8e-08 65.5 373 32.7
Lsat_1_v5_gn_8_114961 Lactuca sativa HOM05D003795 ORTHO05D004308 2.3e-08 65.1 535 35.3
CDE04G0398 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 5.2e-08 63.9 754 23.7
Os02g0638200 Oryza sativa ssp. japonica HOM05D003795 ORTHO05D004308 2.0e-07 62.0 147 36.7
Lalb_Chr10g0103871 Lupinus albus HOM05D003795 ORTHO05D004308 3.3e-07 61.2 101 47.5
BcaC04g22717 Brassica carinata HOM05D011073 ORTHO05D013800 4.8e-06 57.4 52 65.4
TAR629G2443 Trochodendron aralioides HOM05D003795 ORTHO05D004308 8.2e-06 56.6 59 57.6


User provided reference genes

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