Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp7g05260 Schrenkiella parvula HOM05D008497 ORTHO05D003355 4.5e-192 674.5 354 100.0
AL7G45710 Arabidopsis lyrata HOM05D008497 ORTHO05D003355 3.8e-50 203.0 394 40.1
AT5G37190 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 4.7e-48 196.1 406 39.2
Carub.0007s3238 Capsella rubella HOM05D008497 ORTHO05D003355 1.5e-46 191.0 404 40.1
AT4G00930 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 3.2e-44 183.3 373 37.8
Thhalv10023229m.g Eutrema salsugineum HOM05D008497 ORTHO05D003355 1.9e-33 147.5 334 35.6
CARHR215860 Cardamine hirsuta HOM05D008497 ORTHO05D003355 7.5e-30 135.6 431 31.8
Sp2g01280 Schrenkiella parvula HOM05D008497 ORTHO05D027096 3.0e-26 123.6 364 31.6
A09p15560 Brassica napus HOM05D008497 ORTHO05D003355 2.4e-23 114.0 359 33.7
BraA09t37196Z Brassica rapa HOM05D008497 ORTHO05D003355 2.4e-23 114.0 359 33.7
AT4G00920 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 4.0e-23 113.2 229 34.5
BcaC06g36075 Brassica carinata HOM05D008497 ORTHO05D003355 5.2e-23 112.8 326 31.3
BcaB07g31396 Brassica carinata HOM05D008497 ORTHO05D003355 8.9e-23 112.1 137 43.8
C07p08170 Brassica napus HOM05D008497 ORTHO05D003355 2.0e-22 110.9 335 30.1
BolC7t41233H Brassica oleracea HOM05D008497 ORTHO05D003355 2.0e-22 110.9 335 30.1
BolC9t54783H Brassica oleracea HOM05D008497 ORTHO05D003355 2.6e-22 110.5 350 33.1
BcaC04g22481 Brassica carinata HOM05D008497 ORTHO05D003355 5.8e-22 109.4 349 33.2
AL1G64360 Arabidopsis lyrata HOM05D008497 ORTHO05D003355 9.9e-22 108.6 273 35.2
Sp7g05240 Schrenkiella parvula HOM05D008497 ORTHO05D003355 1.7e-21 107.8 70 90.0
C09p18810 Brassica napus HOM05D008497 ORTHO05D003355 4.9e-21 106.3 351 32.5
THA.LOC104807749 Tarenaya hassleriana HOM05D008497 ORTHO05D003355 8.4e-21 105.5 94 48.9
Sp7g04810 Schrenkiella parvula HOM05D008497 ORTHO05D003355 1.4e-20 104.8 158 40.5
AL1G63810 Arabidopsis lyrata HOM05D008497 ORTHO05D003355 2.4e-20 104.0 224 34.8
THA.LOC104825539 Tarenaya hassleriana HOM05D005863 ORTHO05D003355 3.2e-20 103.6 94 48.9
HanXRQChr08g0208041 Helianthus annuus HOM05D005863 ORTHO05D003355 5.4e-20 102.8 92 47.8
AT2G02770 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 1.2e-19 101.7 288 31.2
HanXRQChr01g0023571 Helianthus annuus HOM05D005863 ORTHO05D003355 3.5e-19 100.1 123 42.3
TWI36G0003 Tripterygium wilfordii HOM05D005863 ORTHO05D003355 3.5e-19 100.1 131 39.7
Ciclev10030561m.g Citrus clementina HOM05D005863 ORTHO05D003355 6.0e-19 99.4 105 42.9
Thecc.02G268600 Theobroma cacao HOM05D005863 ORTHO05D003355 6.0e-19 99.4 100 46.0
DCAR_024069 Daucus carota HOM05D005863 ORTHO05D003355 1.0e-18 98.6 140 37.9
vmacro01106 Vaccinium macrocarpon HOM05D005863 ORTHO05D003355 1.3e-18 98.2 95 46.3
Dinv14763 Davidia involucrata HOM05D005863 ORTHO05D003355 1.7e-18 97.8 102 43.1
Duzib268G1590 Durio zibethinus HOM05D005863 ORTHO05D003355 1.7e-18 97.8 92 47.8
Manes.12G018600 Manihot esculenta HOM05D005863 ORTHO05D003355 1.7e-18 97.8 98 45.9
SalBow2G2700 Salvia bowleyana HOM05D005863 ORTHO05D003355 1.7e-18 97.8 88 50.0
Gorai.005G174200 Gossypium raimondii HOM05D005863 ORTHO05D003355 2.3e-18 97.4 91 46.2
PGSC0003DMG400010741 Solanum tuberosum HOM05D012928 ORTHO05D003355 2.3e-18 97.4 85 51.8
Glyma.11G245500 Glycine max HOM05D013281 ORTHO05D003355 3.0e-18 97.1 97 44.3
Sopen05g009140 Solanum pennellii HOM05D012928 ORTHO05D003355 3.0e-18 97.1 86 48.8
TAR629G1344 Trochodendron aralioides HOM05D005863 ORTHO05D003355 3.0e-18 97.1 109 40.4
Lsat_1_v5_gn_8_150460 Lactuca sativa HOM05D005863 ORTHO05D003355 3.9e-18 96.7 98 44.9
PGR102G1092 Punica granatum HOM05D005863 ORTHO05D003355 3.9e-18 96.7 119 40.3
Aqoxy3G01339 Aquilegia oxysepala HOM05D005863 ORTHO05D003355 5.1e-18 96.3 122 40.2
Solyc05g014130.3 Solanum lycopersicum HOM05D012928 ORTHO05D003355 5.1e-18 96.3 85 49.4
BcaC02g10405 Brassica carinata HOM05D008497 ORTHO05D003355 6.6e-18 95.9 107 47.7
C04p29310 Brassica napus HOM05D008497 ORTHO05D003355 6.6e-18 95.9 107 47.7
Glyma.18G011700 Glycine max HOM05D013281 ORTHO05D003355 6.6e-18 95.9 94 43.6
Gohir.A03G131400 Gossypium hirsutum HOM05D005863 ORTHO05D003355 6.6e-18 95.9 91 45.1
AT2G01800 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 1.1e-17 95.1 92 46.7
MSTRG.7960 Avicennia marina HOM05D005863 ORTHO05D003355 1.1e-17 95.1 95 42.1
COL.COLO4_23547 Corchorus olitorius HOM05D005863 ORTHO05D003355 1.1e-17 95.1 86 46.5
Duzib251G0242 Durio zibethinus HOM05D005863 ORTHO05D003355 1.1e-17 95.1 89 48.3
Potri.010G052200 Populus trichocarpa HOM05D005863 ORTHO05D003355 1.1e-17 95.1 106 42.5
Manes.13G019100 Manihot esculenta HOM05D005863 ORTHO05D003355 1.5e-17 94.7 92 44.6
Nitab4.5_0007393g0020 Nicotiana tabacum HOM05D012928 ORTHO05D003355 1.5e-17 94.7 96 46.9
Psat5g094240 Pisum sativum HOM05D013281 ORTHO05D003355 1.9e-17 94.4 85 48.2
Sabra10G0018100 Salix brachista HOM05D005863 ORTHO05D003355 1.9e-17 94.4 92 44.6
CiPaw.11G070600 Carya illinoinensis HOM05D005863 ORTHO05D003355 2.5e-17 94.0 92 46.7
SGA_v2.0_scaffold124G33641 Striga asiatica HOM05D005863 ORTHO05D003355 2.5e-17 94.0 209 32.5
Haze_12305 Corylus avellana HOM05D005863 ORTHO05D003355 3.3e-17 93.6 102 43.1
AT1G30060 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 4.3e-17 93.2 124 37.9
Nitab4.5_0000041g0190 Nicotiana tabacum HOM05D012928 ORTHO05D003355 4.3e-17 93.2 86 50.0
Rhsim12G0037600 Rhododendron simsii HOM05D005863 ORTHO05D003355 4.3e-17 93.2 222 30.6
Lalb_Chr23g0277781 Lupinus albus HOM05D013281 ORTHO05D003355 5.6e-17 92.8 141 36.2
Medtr3g086220 Medicago truncatula HOM05D013281 ORTHO05D003355 5.6e-17 92.8 215 32.6
Nn4g22491 Nelumbo nucifera HOM05D005863 ORTHO05D003355 5.6e-17 92.8 84 45.2
Nitab4.5_0011762g0010 Nicotiana tabacum HOM05D012928 ORTHO05D003355 5.6e-17 92.8 86 46.5
PSO017G4976 Papaver somniferum HOM05D040514 ORTHO05D003355 5.6e-17 92.8 95 42.1
Aa31sc26G130 Aethionema arabicum HOM05D008497 ORTHO05D003355 7.3e-17 92.4 134 40.3
BolC4t24461H Brassica oleracea HOM05D008497 ORTHO05D003355 7.3e-17 92.4 91 47.3
QL03p055923 Quercus lobata HOM05D005863 ORTHO05D003355 9.6e-17 92.0 102 44.1
Sed0006554 Sechium edule HOM05D005863 ORTHO05D003355 9.6e-17 92.0 85 48.2
Sc14g0008880 Simmondsia chinensis HOM05D005863 ORTHO05D003355 9.6e-17 92.0 191 30.9
MSTRG.544 Avicennia marina HOM05D005863 ORTHO05D003355 2.1e-16 90.9 106 43.4
Peaxi162Scf00128g00645 Petunia axillaris HOM05D012928 ORTHO05D003355 2.1e-16 90.9 91 44.0
GSVIVG01000596001 Vitis vinifera HOM05D005863 ORTHO05D003355 2.1e-16 90.9 94 41.5
PSO384G2180 Papaver somniferum HOM05D005863 ORTHO05D003355 4.7e-16 89.7 162 34.6
Thhalv10028078m.g Eutrema salsugineum HOM05D008497 ORTHO05D003355 8.1e-16 89.0 156 37.8
BraA01t02635Z Brassica rapa HOM05D008497 ORTHO05D003355 1.1e-15 88.6 328 28.0
MELO3C010709.2 Cucumis melo HOM05D005863 ORTHO05D003355 1.4e-15 88.2 126 38.9
Lj6A818T39 Lonicera japonica HOM05D005863 ORTHO05D003355 1.4e-15 88.2 321 30.2
CANSAT01G3281 Cannabis sativa HOM05D005863 ORTHO05D003355 3.1e-15 87.0 192 30.7
PGR031G1574 Punica granatum HOM05D005863 ORTHO05D003355 3.1e-15 87.0 82 48.8
CsaV3_2G025110 Cucumis sativus L. HOM05D005863 ORTHO05D003355 5.3e-15 86.3 126 38.1
Lalb_Chr11g0075601 Lupinus albus HOM05D005863 ORTHO05D003355 5.3e-15 86.3 86 41.9
Potri.007G102500 Populus trichocarpa HOM05D005863 ORTHO05D003355 5.3e-15 86.3 113 37.2
Atru.chr11.2201 Acer truncatum HOM05D005863 ORTHO05D003355 9.0e-15 85.5 181 33.7
Sed0020016 Sechium edule HOM05D005863 ORTHO05D003355 9.0e-15 85.5 118 39.8
Atru.chr2.3697 Acer truncatum HOM05D005863 ORTHO05D003355 3.4e-14 83.6 80 45.0
Cc11_g16250 Coffea canephora HOM05D012928 ORTHO05D003355 5.8e-14 82.8 261 28.0
TPR.G14234 Trifolium pratense HOM05D013281 ORTHO05D003355 5.8e-14 82.8 141 32.6
Sp7g04860 Schrenkiella parvula HOM05D008497 ORTHO05D003355 7.6e-14 82.4 270 28.9
ATR0751G078 Amborella trichopoda HOM05D005863 ORTHO05D003355 9.9e-14 82.0 85 40.0
VMungo1383G2020 Vigna mungo HOM05D013281 ORTHO05D003355 1.7e-13 81.3 89 42.7
Sabra07G0084200 Salix brachista HOM05D005863 ORTHO05D003355 3.8e-13 80.1 113 35.4
Cpa.g.sc369.6 Carica papaya HOM05D005863 ORTHO05D003355 6.4e-13 79.3 334 26.0
Migut.K00651 Erythranthe guttata HOM05D005863 ORTHO05D003355 6.4e-13 79.3 348 24.7
MBI14_g22553_MAGBIO Magnolia biondii HOM05D005863 ORTHO05D003355 8.4e-13 79.0 85 40.0
Carub.0001s4470 Capsella rubella HOM05D008497 ORTHO05D003355 1.1e-12 78.6 167 34.7
ClCG08G017500 Citrullus lanatus HOM05D005863 ORTHO05D003355 4.2e-12 76.6 337 27.6
MD16G1107000 Malus domestica HOM05D005863 ORTHO05D017031 4.2e-12 76.6 84 42.9
CAN.G650.29 Capsicum annuum HOM05D012928 ORTHO05D003355 5.4e-12 76.3 125 34.4
TAR629G0397 Trochodendron aralioides HOM05D005863 ORTHO05D003355 9.3e-12 75.5 113 32.7
RcHm_v2.0_Chr3g0496661 Rosa chinensis HOM05D014719 ORTHO05D003355 1.6e-11 74.7 80 42.5
HPP92_003025 Vanilla planifolia HOM05D048574 ORTHO05D003355 1.6e-11 74.7 148 31.8
HPP92_027528 Vanilla planifolia HOM05D005863 ORTHO05D003355 1.6e-11 74.7 88 43.2
AT4G00580 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 2.1e-11 74.3 344 25.9
Ah.02g130420 Amaranthus hybridus HOM05D025851 ORTHO05D003355 4.6e-11 73.2 98 33.7
ATR0824G200 Amborella trichopoda HOM05D005863 ORTHO05D003355 4.6e-11 73.2 351 21.9
Ciclev10008896m.g Citrus clementina HOM05D005863 ORTHO05D003355 4.6e-11 73.2 76 43.4
Thhalv10027990m.g Eutrema salsugineum HOM05D008497 ORTHO05D003355 4.6e-11 73.2 113 34.5
FAN12G0897 Fragaria x ananassa HOM05D005863 ORTHO05D017031 4.6e-11 73.2 92 40.2
Lsat_1_v5_gn_7_114301 Lactuca sativa HOM05D005863 ORTHO05D003355 4.6e-11 73.2 86 36.0
Phvul.001G257200 Phaseolus vulgaris HOM05D013281 ORTHO05D003355 4.6e-11 73.2 331 25.4
Prupe.1G239400 Prunus persica HOM05D005863 ORTHO05D017031 4.6e-11 73.2 344 26.7
PSO339G3984 Papaver somniferum HOM05D005863 ORTHO05D003355 6.0e-11 72.8 229 27.5
MD13G1106900 Malus domestica HOM05D005863 ORTHO05D017031 7.8e-11 72.4 118 36.4
vmacro09646 Vaccinium macrocarpon HOM05D005863 ORTHO05D003355 1.3e-10 71.6 76 39.5
Aa31sc46G40 Aethionema arabicum HOM05D005863 ORTHO05D003355 1.7e-10 71.2 144 28.5
FAN22G1084 Fragaria x ananassa HOM05D005863 ORTHO05D017031 1.7e-10 71.2 196 29.6
FAN22G1483 Fragaria x ananassa HOM05D005863 ORTHO05D017031 1.7e-10 71.2 196 29.6
THA.LOC104808433 Tarenaya hassleriana HOM05D008497 ORTHO05D003355 1.7e-10 71.2 120 33.3
THA.LOC104825537 Tarenaya hassleriana HOM05D008497 ORTHO05D003355 1.7e-10 71.2 120 33.3
Aa31LG7G9560 Aethionema arabicum HOM05D008497 ORTHO05D003355 2.3e-10 70.9 389 25.7
RcHm_v2.0_Chr4g0432241 Rosa chinensis HOM05D005863 ORTHO05D017031 2.3e-10 70.9 242 27.7
THA.LOC104825538 Tarenaya hassleriana HOM05D008497 ORTHO05D003355 2.3e-10 70.9 122 34.4
GSVIVG01014696001 Vitis vinifera HOM05D005863 ORTHO05D003355 3.0e-10 70.5 130 30.0
Cpa.g.sc12.119 Carica papaya HOM05D005863 ORTHO05D003355 3.9e-10 70.1 80 40.0
Thecc.07G012300 Theobroma cacao HOM05D005863 ORTHO05D003355 3.9e-10 70.1 145 32.4
Ah.03g133620 Amaranthus hybridus HOM05D001489 ORTHO05D001380 5.1e-10 69.7 80 36.2
Gorai.013G152000 Gossypium raimondii HOM05D005863 ORTHO05D003355 5.1e-10 69.7 85 37.6
Prupe.8G267500 Prunus persica HOM05D014719 ORTHO05D003355 5.1e-10 69.7 81 42.0
THA.LOC104822728 Tarenaya hassleriana HOM05D012516 ORTHO05D003355 5.1e-10 69.7 89 37.1
BcaB02g10795 Brassica carinata HOM05D012516 ORTHO05D003355 6.6e-10 69.3 104 35.6
FAN17G1935 Fragaria x ananassa HOM05D005863 ORTHO05D017031 6.6e-10 69.3 193 30.1
Gohir.D13G135600 Gossypium hirsutum HOM05D005863 ORTHO05D003355 6.6e-10 69.3 81 38.3
Actinidia37152 Actinidia chinensis HOM05D005863 ORTHO05D003355 8.7e-10 68.9 81 37.0
Gohir.A13G132200 Gossypium hirsutum HOM05D005863 ORTHO05D003355 8.7e-10 68.9 85 37.6
Thhalv10028182m.g Eutrema salsugineum HOM05D008497 ORTHO05D003355 1.1e-09 68.6 111 35.1
PSO339G2613 Papaver somniferum HOM05D005863 ORTHO05D003355 1.1e-09 68.6 88 30.7
PSO384G3490 Papaver somniferum HOM05D005863 ORTHO05D003355 1.1e-09 68.6 88 30.7
FvH4_1g28370 Fragaria vesca HOM05D014719 ORTHO05D003355 1.5e-09 68.2 81 43.2
FAN07G0148 Fragaria x ananassa HOM05D005863 ORTHO05D017031 1.9e-09 67.8 245 26.9
Actinidia30696 Actinidia chinensis HOM05D005863 ORTHO05D003355 2.5e-09 67.4 72 40.3
BraA05t20625Z Brassica rapa HOM05D012516 ORTHO05D003355 2.5e-09 67.4 90 37.8
TWI38G1195 Tripterygium wilfordii HOM05D005863 ORTHO05D003355 2.5e-09 67.4 94 37.2
HanXRQChr11g0334111 Helianthus annuus HOM05D005863 ORTHO05D003355 3.3e-09 67.0 87 32.2
Aa31sc26G90 Aethionema arabicum HOM05D005863 ORTHO05D003355 4.3e-09 66.6 143 28.0
Nn1g07525 Nelumbo nucifera HOM05D005863 ORTHO05D003355 4.3e-09 66.6 258 26.0
PGR031G0790 Punica granatum HOM05D005863 ORTHO05D003355 7.3e-09 65.9 191 28.3
Carub.0003s3440 Capsella rubella HOM05D008497 ORTHO05D003355 9.6e-09 65.5 334 25.1
Rhsim04G0012300 Rhododendron simsii HOM05D005863 ORTHO05D003355 9.6e-09 65.5 136 28.7
Hma1.2p1_2829F.1_g329210 Hydrangea macrophylla HOM05D005863 ORTHO05D003355 1.3e-08 65.1 95 33.7
Zm00001eb079300 Zea mays HOM05D028546 ORTHO05D030325 1.3e-08 65.1 87 39.1
A05p17260 Brassica napus HOM05D012516 ORTHO05D003355 1.6e-08 64.7 88 36.4
AUR62024201 Chenopodium quinoa HOM05D025851 ORTHO05D044019 1.6e-08 64.7 258 25.2
Glyma.09G051600 Glycine max HOM05D005863 ORTHO05D003355 1.6e-08 64.7 132 28.8
Peaxi162Scf01762g00013 Petunia axillaris HOM05D005863 ORTHO05D003355 1.6e-08 64.7 143 29.4
Nitab4.5_0001159g0240 Nicotiana tabacum HOM05D005863 ORTHO05D003355 3.6e-08 63.5 151 26.5
Lj4g0027725 Lotus japonicus HOM05D013281 ORTHO05D003355 4.8e-08 63.2 365 25.8
Sc16g0008130 Simmondsia chinensis HOM05D005863 ORTHO05D003355 4.8e-08 63.2 84 38.1
Carub.0001s4444 Capsella rubella HOM05D012516 ORTHO05D003355 8.1e-08 62.4 136 30.1
AT1G55865 Arabidopsis thaliana HOM05D012516 ORTHO05D003355 1.1e-07 62.0 150 28.7
Oeu038657.1 Olea europaea HOM05D012928 ORTHO05D003355 1.1e-07 62.0 56 44.6
CARHR174360 Cardamine hirsuta HOM05D005863 ORTHO05D003355 1.4e-07 61.6 56 50.0
Eucgr.F03684 Eucalyptus grandis HOM05D005863 ORTHO05D003355 1.4e-07 61.6 96 34.4
SEGI_35034 Sequoiadendron giganteum HOM05D005863 ORTHO05D003355 1.4e-07 61.6 117 28.2
EL10As2g23204 Beta vulgaris HOM05D025851 ORTHO05D003355 1.8e-07 61.2 363 22.0
Medtr2g036080 Medicago truncatula HOM05D007390 ORTHO05D009114 2.4e-07 60.8 86 36.0
arahy.Tifrunner.gnm1.ann1.R3FSDD Arachis hypogaea HOM05D015529 ORTHO05D015409 4.0e-07 60.1 296 22.0
Migut.A01086 Erythranthe guttata HOM05D005863 ORTHO05D003355 5.3e-07 59.7 127 32.3
FvH4_4g25060 Fragaria vesca HOM05D005863 ORTHO05D017031 5.3e-07 59.7 262 25.2
PSO478G3985 Papaver somniferum HOM05D040514 ORTHO05D003355 6.9e-07 59.3 51 49.0
Sp7g05270 Schrenkiella parvula HOM05D000874 ORTHO05D001049 9.0e-07 58.9 129 43.4
Hund23103 Selenicereus undatus HOM05D005863 ORTHO05D003355 9.0e-07 58.9 100 32.0
C06p16270 Brassica napus HOM05D012516 ORTHO05D003355 1.2e-06 58.5 90 33.3
BolC6t36826H Brassica oleracea HOM05D012516 ORTHO05D003355 1.2e-06 58.5 90 33.3
Sed0025324 Sechium edule HOM05D031146 ORTHO05D003355 1.2e-06 58.5 63 42.9
Aa31LG10G330 Aethionema arabicum HOM05D000747 ORTHO05D001683 2.6e-06 57.4 128 28.1
Nitab4.5_0006876g0020 Nicotiana tabacum HOM05D005863 ORTHO05D003355 3.4e-06 57.0 149 24.8
FAN23G2175 Fragaria x ananassa HOM05D014719 ORTHO05D003355 4.5e-06 56.6 143 30.8
Ca_25120_v3 Cicer arietinum L. HOM05D013281 ORTHO05D015409 5.8e-06 56.2 238 24.8
CsaV3_7G011440 Cucumis sativus L. HOM05D031146 ORTHO05D003355 5.8e-06 56.2 63 41.3


User provided reference genes

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