Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp7g04950 Schrenkiella parvula HOM05D007883 ORTHO05D037538 4.5e-149 531.2 259 100.0
Sp6g08560 Schrenkiella parvula HOM05D000023 ORTHO05D000014 5.5e-46 188.7 103 84.5
Sp1g32570 Schrenkiella parvula HOM05D007883 ORTHO05D037538 1.0e-36 157.9 109 77.1
BraA03t15322Z Brassica rapa HOM05D000023 ORTHO05D000014 8.2e-34 148.3 103 62.1
CARHR029720 Cardamine hirsuta HOM05D000023 ORTHO05D000014 1.8e-33 147.1 103 62.1
Thhalv10022981m.g Eutrema salsugineum HOM05D000023 ORTHO05D000014 3.1e-33 146.4 106 60.4
Thhalv10012177m.g Eutrema salsugineum HOM05D000023 ORTHO05D000014 5.3e-33 145.6 102 59.8
Sp3g25000 Schrenkiella parvula HOM05D007883 ORTHO05D037538 9.1e-33 144.8 77 90.9
BolC3t19320H Brassica oleracea HOM05D000023 ORTHO05D000014 1.6e-32 144.1 106 56.6
C01p38810 Brassica napus HOM05D000023 ORTHO05D014533 5.9e-32 142.1 161 46.0
Sp6g08850 Schrenkiella parvula HOM05D007883 ORTHO05D010332 1.3e-31 141.0 109 67.0
C04p48900 Brassica napus HOM05D000023 ORTHO05D014533 2.7e-29 133.3 103 59.2
BolC4t26473H Brassica oleracea HOM05D000023 ORTHO05D014533 2.7e-29 133.3 103 59.2
AL1G48110 Arabidopsis lyrata HOM05D000023 ORTHO05D000014 4.7e-29 132.5 103 60.2
C03p79520 Brassica napus HOM05D000023 ORTHO05D000014 6.1e-29 132.1 103 54.4
C08p10220 Brassica napus HOM05D000023 ORTHO05D000014 3.0e-28 129.8 103 56.3
Rhsim05G0190500 Rhododendron simsii HOM05D000023 ORTHO05D000014 5.2e-28 129.0 107 51.4
Rhsim05G0091000 Rhododendron simsii HOM05D000023 ORTHO05D000014 6.8e-28 128.6 107 50.5
Rhsim01G0081000 Rhododendron simsii HOM05D000023 ORTHO05D000014 1.2e-27 127.9 104 51.9
Rhsim09G0032000 Rhododendron simsii HOM05D000023 ORTHO05D000014 2.0e-27 127.1 109 51.4
Rhsim07G0175200 Rhododendron simsii HOM05D000023 ORTHO05D000014 2.2e-26 123.6 107 47.7
Rhsim03G0092200 Rhododendron simsii HOM05D000023 ORTHO05D000014 4.8e-26 122.5 112 45.5
Rhsim09G0063600 Rhododendron simsii HOM05D000023 ORTHO05D000014 4.8e-26 122.5 112 45.5
Rhsim13G0106300 Rhododendron simsii HOM05D000023 ORTHO05D000014 4.8e-26 122.5 112 45.5
Rhsim13G0148100 Rhododendron simsii HOM05D000023 ORTHO05D000014 6.3e-26 122.1 109 46.8
Sp7g10570 Schrenkiella parvula HOM05D007883 ORTHO05D010332 8.3e-26 121.7 116 59.5
Hma1.2p1_0160F.1_g070850 Hydrangea macrophylla HOM05D000023 ORTHO05D000014 3.1e-25 119.8 106 45.3
Rhsim01G0206800 Rhododendron simsii HOM05D000023 ORTHO05D000014 3.1e-25 119.8 112 43.8
Rhsim05G0095700 Rhododendron simsii HOM05D000023 ORTHO05D000014 4.1e-25 119.4 98 49.0
Hma1.2p1_0118F.1_g056490 Hydrangea macrophylla HOM05D000023 ORTHO05D000014 5.3e-25 119.0 106 45.3
Hma1.2p1_2002F.1_g310750 Hydrangea macrophylla HOM05D000023 ORTHO05D000014 5.3e-25 119.0 112 42.9
Rhsim03G0126000 Rhododendron simsii HOM05D000023 ORTHO05D000014 9.1e-25 118.2 103 50.5
RhsimUnG0167600 Rhododendron simsii HOM05D000023 ORTHO05D000014 9.1e-25 118.2 103 50.5
RcHm_v2.0_Chr1g0314451 Rosa chinensis HOM05D000023 ORTHO05D000014 2.0e-24 117.1 106 47.2
Hma1.2p1_0545F.1_g175990 Hydrangea macrophylla HOM05D000023 ORTHO05D000014 4.5e-24 115.9 108 43.5
RhsimUnG0157200 Rhododendron simsii HOM05D000023 ORTHO05D000014 7.7e-24 115.2 109 44.0
Rhsim06G0070600 Rhododendron simsii HOM05D000023 ORTHO05D000014 2.9e-23 113.2 103 47.6
RcHm_v2.0_Chr6g0251571 Rosa chinensis HOM05D000023 ORTHO05D000014 3.8e-23 112.8 249 31.7
Atru.chr9.611 Acer truncatum HOM05D000023 ORTHO05D000014 5.0e-23 112.5 107 52.3
Rhsim10G0066300 Rhododendron simsii HOM05D017719 ORTHO05D019411 8.5e-23 111.7 114 43.0
Atru.chr6.523 Acer truncatum HOM05D000023 ORTHO05D000014 1.1e-22 111.3 108 50.0
Hma1.2p1_0479F.1_g161750 Hydrangea macrophylla HOM05D000023 ORTHO05D000014 1.1e-22 111.3 99 44.4
SpUn0008_0040 Schrenkiella parvula HOM05D000471 ORTHO05D011337 1.1e-22 111.3 120 56.7
Atru.chr12.1930 Acer truncatum HOM05D000023 ORTHO05D000014 9.4e-22 108.2 107 47.7
Atru.chr12.1937 Acer truncatum HOM05D000023 ORTHO05D000014 9.4e-22 108.2 107 47.7
Oeu055220.1 Olea europaea HOM05D000023 ORTHO05D000014 9.4e-22 108.2 105 45.7
Oeu036828.1 Olea europaea HOM05D000023 ORTHO05D000014 1.2e-21 107.8 102 46.1
Atru.chr1.1880 Acer truncatum HOM05D000023 ORTHO05D000014 4.7e-21 105.9 104 48.1
Atru.chr1.2037 Acer truncatum HOM05D000023 ORTHO05D000014 1.4e-20 104.4 110 45.5
FvH4_5g39742 Fragaria vesca HOM05D000023 ORTHO05D000014 1.8e-20 104.0 254 29.1
BraA07t27801Z Brassica rapa HOM05D000023 ORTHO05D000014 3.0e-20 103.2 106 43.4
Oeu008631.1 Olea europaea HOM05D000023 ORTHO05D000014 3.0e-20 103.2 115 43.5
A07p10130 Brassica napus HOM05D000023 ORTHO05D000014 8.8e-20 101.7 106 42.5
Atru.chr8.33 Acer truncatum HOM05D000023 ORTHO05D000014 3.4e-19 99.8 108 44.4
Atru.chr4.1182 Acer truncatum HOM05D000023 ORTHO05D000014 4.4e-19 99.4 109 40.4
Atru.chr8.863 Acer truncatum HOM05D000023 ORTHO05D000014 9.8e-19 98.2 102 48.0
BraA07t28806Z Brassica rapa HOM05D000023 ORTHO05D000014 1.3e-18 97.8 106 41.5
Hma1.2p1_0238F.1_g099760 Hydrangea macrophylla HOM05D000023 ORTHO05D000014 3.7e-18 96.3 90 42.2
C03p46020 Brassica napus HOM05D000023 ORTHO05D016127 6.3e-18 95.5 96 42.7
BolC3t16874H Brassica oleracea HOM05D000023 ORTHO05D016127 6.3e-18 95.5 96 42.7
ECA234G0550 Erigeron canadensis HOM05D000023 ORTHO05D000014 8.3e-18 95.1 105 39.0
Atru.chr7.739 Acer truncatum HOM05D017719 ORTHO05D019411 1.1e-17 94.7 98 43.9
TWI75G1282 Tripterygium wilfordii HOM05D000023 ORTHO05D000014 7.0e-17 92.0 88 52.3
CARHR033120 Cardamine hirsuta HOM05D000023 ORTHO05D000014 1.2e-16 91.3 133 42.1
HanXRQChr12g0373131 Helianthus annuus HOM05D000023 ORTHO05D009195 1.2e-16 91.3 180 32.2
C06p16660 Brassica napus HOM05D017719 ORTHO05D019411 2.7e-16 90.1 104 41.3
BolC6t36867H Brassica oleracea HOM05D017719 ORTHO05D019411 2.7e-16 90.1 104 41.3
Rhsim06G0134600 Rhododendron simsii HOM05D000023 ORTHO05D000014 5.9e-16 89.0 69 52.2
Rhsim08G0134200 Rhododendron simsii HOM05D000023 ORTHO05D000014 1.3e-15 87.8 68 54.4
TWI63G1084 Tripterygium wilfordii HOM05D000023 ORTHO05D000014 1.3e-15 87.8 88 51.1
Atru.chr3.1904 Acer truncatum HOM05D000023 ORTHO05D000014 2.3e-15 87.0 94 46.8
TWI63G1334 Tripterygium wilfordii HOM05D000023 ORTHO05D000014 2.3e-15 87.0 108 41.7
Oeu004450.1 Olea europaea HOM05D000023 ORTHO05D000014 8.6e-15 85.1 112 39.3
TWI18G0660 Tripterygium wilfordii HOM05D000023 ORTHO05D000014 1.5e-14 84.3 88 46.6
TWI18G0682 Tripterygium wilfordii HOM05D000023 ORTHO05D000014 1.5e-14 84.3 88 47.7
Oeu004452.1 Olea europaea HOM05D000023 ORTHO05D000014 1.9e-14 84.0 112 39.3
TWI32G1076 Tripterygium wilfordii HOM05D000023 ORTHO05D000014 2.5e-14 83.6 88 47.7
Atru.chr8.31 Acer truncatum HOM05D000023 ORTHO05D000014 3.3e-14 83.2 87 50.6
TWI77G0940 Tripterygium wilfordii HOM05D000023 ORTHO05D000014 1.2e-13 81.3 92 45.7
BolC2t07329H Brassica oleracea HOM05D000106 ORTHO05D000160 3.6e-13 79.7 53 64.2
Thhalv10026863m.g Eutrema salsugineum HOM05D000023 ORTHO05D000014 3.6e-13 79.7 53 58.5
Sp4g01170 Schrenkiella parvula HOM05D000023 ORTHO05D000014 3.6e-13 79.7 85 51.8
Thhalv10015438m.g Eutrema salsugineum HOM05D000023 ORTHO05D000014 4.7e-13 79.3 67 52.2
Hma1.2p1_0352F.1_g133020 Hydrangea macrophylla HOM05D000023 ORTHO05D000014 6.1e-13 79.0 106 34.0
C04p28590 Brassica napus HOM05D000023 ORTHO05D000014 1.8e-12 77.4 64 48.4
BolC4t24403H Brassica oleracea HOM05D000023 ORTHO05D000014 1.8e-12 77.4 64 48.4
BraA04t15802Z Brassica rapa HOM05D000023 ORTHO05D000014 4.0e-12 76.3 64 48.4
C04p28280 Brassica napus HOM05D000023 ORTHO05D014533 1.5e-11 74.3 54 55.6
Sp6g14040 Schrenkiella parvula HOM05D000023 ORTHO05D000014 2.6e-11 73.6 45 68.9
Sp7g03620 Schrenkiella parvula HOM05D000023 ORTHO05D000014 2.6e-11 73.6 45 66.7
Zm00001eb431660 Zea mays HOM05D000023 ORTHO05D000014 4.4e-11 72.8 93 33.3
Hma1.2p1_0246F.1_g101770 Hydrangea macrophylla HOM05D000023 ORTHO05D000014 5.7e-11 72.4 108 36.1
Oeu044943.1 Olea europaea HOM05D000023 ORTHO05D000014 9.2e-09 65.1 54 50.0
Zm00001eb268990 Zea mays HOM05D000023 ORTHO05D000014 1.2e-08 64.7 109 33.0
Os12g0537000 Oryza sativa ssp. japonica HOM05D000023 ORTHO05D000014 2.0e-08 63.9 99 35.4
Os01g0722550 Oryza sativa ssp. japonica HOM05D000023 ORTHO05D000014 3.5e-08 63.2 100 35.0
Glyma.12G105500 Glycine max HOM05D000023 ORTHO05D000014 4.5e-08 62.8 99 34.3
MSTRG.23368 Avicennia marina HOM05D000023 ORTHO05D000014 1.0e-07 61.6 99 33.3
CSS0008330 Camellia sinensis var. sinensis HOM05D000023 ORTHO05D000014 1.0e-07 61.6 90 34.4
Glyma.15G205800 Glycine max HOM05D000023 ORTHO05D000014 1.0e-07 61.6 113 28.3
CSS0017113 Camellia sinensis var. sinensis HOM05D000023 ORTHO05D000014 1.3e-07 61.2 90 34.4
CSS0049915 Camellia sinensis var. sinensis HOM05D000023 ORTHO05D000014 1.3e-07 61.2 90 34.4
CSS0050162 Camellia sinensis var. sinensis HOM05D000023 ORTHO05D000014 1.3e-07 61.2 90 34.4
Glyma.02G159600 Glycine max HOM05D000023 ORTHO05D000014 1.3e-07 61.2 90 34.4
Glyma.18G099100 Glycine max HOM05D000023 ORTHO05D000014 1.7e-07 60.8 105 29.5
Hma1.2p1_0019F.1_g013730 Hydrangea macrophylla HOM05D000023 ORTHO05D000014 1.7e-07 60.8 38 63.2
CSS0048894 Camellia sinensis var. sinensis HOM05D000023 ORTHO05D000014 2.3e-07 60.5 90 34.4
Ca_03726_v3 Cicer arietinum L. HOM05D000023 ORTHO05D000014 2.3e-07 60.5 92 37.0
Glyma.15G231600 Glycine max HOM05D000023 ORTHO05D000014 2.3e-07 60.5 119 29.4
Os01g0379800 Oryza sativa ssp. japonica HOM05D000023 ORTHO05D000014 2.9e-07 60.1 99 34.3
AUR62043267 Chenopodium quinoa HOM05D000023 ORTHO05D000014 3.9e-07 59.7 79 35.4
Glyma.06G108300 Glycine max HOM05D000023 ORTHO05D000014 3.9e-07 59.7 99 32.3
MELO3C027820.2 Cucumis melo HOM05D000023 ORTHO05D000014 5.0e-07 59.3 99 32.3
Sed0008376 Sechium edule HOM05D000023 ORTHO05D000014 5.0e-07 59.3 89 36.0
Hund15985 Selenicereus undatus HOM05D000023 ORTHO05D000014 5.0e-07 59.3 95 32.6
AUR62001031 Chenopodium quinoa HOM05D000023 ORTHO05D000014 6.6e-07 58.9 89 34.8
Glyma.01G121600 Glycine max HOM05D000023 ORTHO05D000014 6.6e-07 58.9 90 33.3
Glyma.03G080400 Glycine max HOM05D000023 ORTHO05D000014 6.6e-07 58.9 90 33.3
Glyma.06G230700 Glycine max HOM05D000023 ORTHO05D000014 6.6e-07 58.9 90 33.3
Glyma.13G192700 Glycine max HOM05D000023 ORTHO05D000014 6.6e-07 58.9 90 33.3
Glyma.13G192800 Glycine max HOM05D000023 ORTHO05D000014 6.6e-07 58.9 90 33.3
Glyma.17G215100 Glycine max HOM05D000023 ORTHO05D000014 8.6e-07 58.5 90 33.3
Glyma.19G103700 Glycine max HOM05D000023 ORTHO05D000014 1.1e-06 58.2 99 32.3
Manes.16G093350 Manihot esculenta HOM05D000023 ORTHO05D000014 1.1e-06 58.2 54 48.1
Glyma.09G000200 Glycine max HOM05D000023 ORTHO05D000014 1.5e-06 57.8 90 33.3
Glyma.02G172500 Glycine max HOM05D000023 ORTHO05D000014 1.9e-06 57.4 90 33.3
Glyma.04G163700 Glycine max HOM05D000023 ORTHO05D000014 1.9e-06 57.4 85 34.1
Glyma.08G294500 Glycine max HOM05D000023 ORTHO05D000014 1.9e-06 57.4 90 33.3
Glyma.14G162700 Glycine max HOM05D000023 ORTHO05D000014 1.9e-06 57.4 84 33.3
Glyma.06G237800 Glycine max HOM05D000023 ORTHO05D000014 2.5e-06 57.0 90 33.3
Sp5g19630 Schrenkiella parvula HOM05D007883 ORTHO05D010332 2.5e-06 57.0 99 34.3
Os11g0500100 Oryza sativa ssp. japonica HOM05D000023 ORTHO05D000014 3.3e-06 56.6 99 33.3
SEGI_36787 Sequoiadendron giganteum HOM05D000023 ORTHO05D000014 4.3e-06 56.2 89 28.1
Glyma.12G152900 Glycine max HOM05D000023 ORTHO05D000014 5.6e-06 55.8 90 32.2
Rhsim01G0126200 Rhododendron simsii HOM05D000023 ORTHO05D000014 5.6e-06 55.8 106 30.2
SpUn0008_0070 Schrenkiella parvula HOM05D007883 ORTHO05D010332 5.6e-06 55.8 92 34.8
Sp3g24130 Schrenkiella parvula HOM05D007883 ORTHO05D010332 7.3e-06 55.5 79 44.3
Nn2g14775 Nelumbo nucifera HOM05D000023 ORTHO05D000014 9.5e-06 55.1 101 34.7
Sp5g19440 Schrenkiella parvula HOM05D007883 ORTHO05D010332 9.5e-06 55.1 96 41.7


User provided reference genes

Program Settings