Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp7g04810 Schrenkiella parvula HOM05D008497 ORTHO05D003355 2.4e-122 442.2 221 100.0
Sp7g04860 Schrenkiella parvula HOM05D008497 ORTHO05D003355 8.9e-29 131.3 153 49.7
AT4G00930 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 1.1e-26 124.4 141 48.9
AT5G37190 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 1.4e-26 124.0 188 43.1
Thhalv10028078m.g Eutrema salsugineum HOM05D008497 ORTHO05D003355 2.0e-25 120.2 148 45.9
Thhalv10023229m.g Eutrema salsugineum HOM05D008497 ORTHO05D003355 2.7e-25 119.8 129 48.8
Sp2g01280 Schrenkiella parvula HOM05D008497 ORTHO05D027096 6.6e-24 115.2 203 38.4
Carub.0007s3238 Capsella rubella HOM05D008497 ORTHO05D003355 3.3e-23 112.8 186 40.9
AL1G64360 Arabidopsis lyrata HOM05D008497 ORTHO05D003355 6.2e-22 108.6 151 44.4
AL7G45710 Arabidopsis lyrata HOM05D008497 ORTHO05D003355 8.1e-22 108.2 149 43.0
BcaB07g31396 Brassica carinata HOM05D008497 ORTHO05D003355 1.8e-21 107.1 132 46.2
Sp7g05260 Schrenkiella parvula HOM05D008497 ORTHO05D003355 4.0e-21 105.9 158 40.5
AT4G00920 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 5.2e-21 105.5 152 42.1
BcaC06g36075 Brassica carinata HOM05D008497 ORTHO05D003355 5.2e-21 105.5 178 39.3
C07p08170 Brassica napus HOM05D008497 ORTHO05D003355 5.2e-21 105.5 178 39.3
BolC7t41233H Brassica oleracea HOM05D008497 ORTHO05D003355 5.2e-21 105.5 178 39.3
AT2G02770 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 2.0e-20 103.6 166 40.4
AL1G63810 Arabidopsis lyrata HOM05D008497 ORTHO05D003355 4.4e-20 102.4 133 43.6
CARHR215860 Cardamine hirsuta HOM05D008497 ORTHO05D003355 3.7e-19 99.4 231 35.1
BcaC04g22481 Brassica carinata HOM05D008497 ORTHO05D003355 4.9e-19 99.0 154 39.6
BraA01t02635Z Brassica rapa HOM05D008497 ORTHO05D003355 4.9e-19 99.0 96 50.0
Carub.0003s3440 Capsella rubella HOM05D008497 ORTHO05D003355 6.4e-19 98.6 149 38.3
DCAR_024069 Daucus carota HOM05D005863 ORTHO05D003355 8.3e-19 98.2 84 54.8
AT1G30060 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 1.9e-18 97.1 95 50.5
AT2G01800 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 1.9e-18 97.1 152 40.1
BolC9t54783H Brassica oleracea HOM05D008497 ORTHO05D003355 2.4e-18 96.7 155 40.0
THA.LOC104807749 Tarenaya hassleriana HOM05D008497 ORTHO05D003355 2.4e-18 96.7 84 54.8
THA.LOC104825539 Tarenaya hassleriana HOM05D005863 ORTHO05D003355 2.4e-18 96.7 113 43.4
Lj6A818T39 Lonicera japonica HOM05D005863 ORTHO05D003355 3.2e-18 96.3 156 40.4
Sc14g0008880 Simmondsia chinensis HOM05D005863 ORTHO05D003355 4.1e-18 95.9 88 52.3
Aqoxy3G01339 Aquilegia oxysepala HOM05D005863 ORTHO05D003355 5.4e-18 95.5 131 39.7
Medtr3g086220 Medicago truncatula HOM05D013281 ORTHO05D003355 7.1e-18 95.1 81 53.1
ATR0824G200 Amborella trichopoda HOM05D005863 ORTHO05D003355 9.2e-18 94.7 87 49.4
Lsat_1_v5_gn_8_150460 Lactuca sativa HOM05D005863 ORTHO05D003355 9.2e-18 94.7 84 52.4
TWI36G0003 Tripterygium wilfordii HOM05D005863 ORTHO05D003355 9.2e-18 94.7 82 52.4
AT4G00580 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 1.2e-17 94.4 145 40.0
A09p15560 Brassica napus HOM05D008497 ORTHO05D003355 1.2e-17 94.4 176 35.8
BraA09t37196Z Brassica rapa HOM05D008497 ORTHO05D003355 1.2e-17 94.4 176 35.8
PGSC0003DMG400010741 Solanum tuberosum HOM05D012928 ORTHO05D003355 1.2e-17 94.4 84 51.2
Atru.chr11.2201 Acer truncatum HOM05D005863 ORTHO05D003355 1.6e-17 94.0 126 42.1
Haze_12305 Corylus avellana HOM05D005863 ORTHO05D003355 2.1e-17 93.6 90 51.1
C09p18810 Brassica napus HOM05D008497 ORTHO05D003355 2.7e-17 93.2 159 39.6
Cpa.g.sc369.6 Carica papaya HOM05D005863 ORTHO05D003355 2.7e-17 93.2 192 33.3
Duzib268G1590 Durio zibethinus HOM05D005863 ORTHO05D003355 3.5e-17 92.8 153 37.3
Manes.13G019100 Manihot esculenta HOM05D005863 ORTHO05D003355 6.0e-17 92.0 87 49.4
Ciclev10030561m.g Citrus clementina HOM05D005863 ORTHO05D003355 7.8e-17 91.7 82 53.7
Psat5g094240 Pisum sativum HOM05D013281 ORTHO05D003355 7.8e-17 91.7 81 51.9
ClCG08G017500 Citrullus lanatus HOM05D005863 ORTHO05D003355 1.0e-16 91.3 141 36.2
COL.COLO4_23547 Corchorus olitorius HOM05D005863 ORTHO05D003355 1.0e-16 91.3 82 52.4
Duzib251G0242 Durio zibethinus HOM05D005863 ORTHO05D003355 1.0e-16 91.3 82 53.7
Nitab4.5_0007393g0020 Nicotiana tabacum HOM05D012928 ORTHO05D003355 1.0e-16 91.3 82 52.4
PSO017G4976 Papaver somniferum HOM05D040514 ORTHO05D003355 1.0e-16 91.3 90 46.7
Rhsim12G0037600 Rhododendron simsii HOM05D005863 ORTHO05D003355 1.0e-16 91.3 82 53.7
SalBow2G2700 Salvia bowleyana HOM05D005863 ORTHO05D003355 1.0e-16 91.3 86 51.2
Dinv14763 Davidia involucrata HOM05D005863 ORTHO05D003355 1.3e-16 90.9 82 51.2
Gorai.005G174200 Gossypium raimondii HOM05D005863 ORTHO05D003355 1.3e-16 90.9 111 42.3
Thecc.02G268600 Theobroma cacao HOM05D005863 ORTHO05D003355 1.3e-16 90.9 82 53.7
Gohir.A03G131400 Gossypium hirsutum HOM05D005863 ORTHO05D003355 1.7e-16 90.5 111 42.3
Nitab4.5_0000041g0190 Nicotiana tabacum HOM05D012928 ORTHO05D003355 2.3e-16 90.1 82 52.4
Solyc05g014130.3 Solanum lycopersicum HOM05D012928 ORTHO05D003355 3.0e-16 89.7 84 50.0
Sopen05g009140 Solanum pennellii HOM05D012928 ORTHO05D003355 3.0e-16 89.7 84 50.0
Glyma.11G245500 Glycine max HOM05D013281 ORTHO05D003355 3.9e-16 89.4 86 52.3
Peaxi162Scf00128g00645 Petunia axillaris HOM05D012928 ORTHO05D003355 3.9e-16 89.4 82 51.2
QL03p055923 Quercus lobata HOM05D005863 ORTHO05D003355 3.9e-16 89.4 100 47.0
Glyma.18G011700 Glycine max HOM05D013281 ORTHO05D003355 5.1e-16 89.0 86 52.3
Nitab4.5_0011762g0010 Nicotiana tabacum HOM05D012928 ORTHO05D003355 5.1e-16 89.0 82 50.0
Carub.0001s4470 Capsella rubella HOM05D008497 ORTHO05D003355 8.6e-16 88.2 119 42.9
MELO3C010709.2 Cucumis melo HOM05D005863 ORTHO05D003355 8.6e-16 88.2 82 48.8
TAR629G1344 Trochodendron aralioides HOM05D005863 ORTHO05D003355 8.6e-16 88.2 81 51.9
CiPaw.11G070600 Carya illinoinensis HOM05D005863 ORTHO05D003355 1.5e-15 87.4 90 50.0
AUR62024201 Chenopodium quinoa HOM05D025851 ORTHO05D044019 1.5e-15 87.4 83 48.2
Migut.K00651 Erythranthe guttata HOM05D005863 ORTHO05D003355 1.5e-15 87.4 84 52.4
Prupe.1G239400 Prunus persica HOM05D005863 ORTHO05D017031 1.5e-15 87.4 82 48.8
Manes.12G018600 Manihot esculenta HOM05D005863 ORTHO05D003355 1.9e-15 87.0 82 50.0
GSVIVG01000596001 Vitis vinifera HOM05D005863 ORTHO05D003355 2.5e-15 86.7 216 29.6
PGR031G1574 Punica granatum HOM05D005863 ORTHO05D003355 3.3e-15 86.3 84 52.4
PGR102G1092 Punica granatum HOM05D005863 ORTHO05D003355 3.3e-15 86.3 90 46.7
Nn4g22491 Nelumbo nucifera HOM05D005863 ORTHO05D003355 4.3e-15 85.9 207 32.9
CsaV3_2G025110 Cucumis sativus L. HOM05D005863 ORTHO05D003355 5.6e-15 85.5 82 47.6
Lalb_Chr23g0277781 Lupinus albus HOM05D013281 ORTHO05D003355 7.3e-15 85.1 129 40.3
Sabra10G0018100 Salix brachista HOM05D005863 ORTHO05D003355 9.5e-15 84.7 168 31.0
vmacro01106 Vaccinium macrocarpon HOM05D005863 ORTHO05D003355 9.5e-15 84.7 82 48.8
ATR0751G078 Amborella trichopoda HOM05D005863 ORTHO05D003355 1.2e-14 84.3 100 40.0
Cc11_g16250 Coffea canephora HOM05D012928 ORTHO05D003355 1.2e-14 84.3 81 51.9
Phvul.001G257200 Phaseolus vulgaris HOM05D013281 ORTHO05D003355 1.2e-14 84.3 84 46.4
MSTRG.544 Avicennia marina HOM05D005863 ORTHO05D003355 1.6e-14 84.0 82 50.0
HanXRQChr08g0208041 Helianthus annuus HOM05D005863 ORTHO05D003355 2.1e-14 83.6 82 47.6
VMungo1383G2020 Vigna mungo HOM05D013281 ORTHO05D003355 2.1e-14 83.6 86 44.2
MSTRG.7960 Avicennia marina HOM05D005863 ORTHO05D003355 2.8e-14 83.2 85 47.1
Lalb_Chr11g0075601 Lupinus albus HOM05D005863 ORTHO05D003355 2.8e-14 83.2 101 42.6
MD16G1107000 Malus domestica HOM05D005863 ORTHO05D017031 2.8e-14 83.2 82 47.6
CANSAT01G3281 Cannabis sativa HOM05D005863 ORTHO05D003355 3.6e-14 82.8 84 47.6
HanXRQChr01g0023571 Helianthus annuus HOM05D005863 ORTHO05D003355 3.6e-14 82.8 82 47.6
BolC4t24461H Brassica oleracea HOM05D008497 ORTHO05D003355 4.7e-14 82.4 118 40.7
Sed0006554 Sechium edule HOM05D005863 ORTHO05D003355 8.1e-14 81.6 81 48.1
TPR.G14234 Trifolium pratense HOM05D013281 ORTHO05D003355 8.1e-14 81.6 81 44.4
Potri.010G052200 Populus trichocarpa HOM05D005863 ORTHO05D003355 1.4e-13 80.9 145 34.5
BcaC02g10405 Brassica carinata HOM05D008497 ORTHO05D003355 1.8e-13 80.5 118 41.5
C04p29310 Brassica napus HOM05D008497 ORTHO05D003355 1.8e-13 80.5 118 41.5
PSO384G2180 Papaver somniferum HOM05D005863 ORTHO05D003355 3.1e-13 79.7 97 40.2
SGA_v2.0_scaffold124G33641 Striga asiatica HOM05D005863 ORTHO05D003355 5.2e-13 79.0 86 44.2
MD13G1106900 Malus domestica HOM05D005863 ORTHO05D017031 8.9e-13 78.2 82 48.8
Sed0020016 Sechium edule HOM05D005863 ORTHO05D003355 2.6e-12 76.6 82 41.5
Lj4g0027725 Lotus japonicus HOM05D013281 ORTHO05D003355 3.4e-12 76.3 79 43.0
Aa31LG7G9560 Aethionema arabicum HOM05D008497 ORTHO05D003355 4.4e-12 75.9 144 34.7
EL10As2g23204 Beta vulgaris HOM05D025851 ORTHO05D003355 5.8e-12 75.5 85 42.4
RcHm_v2.0_Chr4g0432241 Rosa chinensis HOM05D005863 ORTHO05D017031 9.9e-12 74.7 91 47.3
Aa31sc26G130 Aethionema arabicum HOM05D008497 ORTHO05D003355 2.9e-11 73.2 87 39.1
Ah.02g130420 Amaranthus hybridus HOM05D025851 ORTHO05D003355 4.9e-11 72.4 83 39.8
arahy.Tifrunner.gnm1.ann1.R3FSDD Arachis hypogaea HOM05D015529 ORTHO05D015409 4.9e-11 72.4 126 33.3
SEGI_35034 Sequoiadendron giganteum HOM05D005863 ORTHO05D003355 4.9e-11 72.4 78 43.6
CAN.G650.29 Capsicum annuum HOM05D012928 ORTHO05D003355 6.4e-11 72.0 126 34.9
FAN12G0897 Fragaria x ananassa HOM05D005863 ORTHO05D017031 6.4e-11 72.0 82 45.1
PSO339G3984 Papaver somniferum HOM05D005863 ORTHO05D003355 8.4e-11 71.6 102 36.3
FAN22G1084 Fragaria x ananassa HOM05D005863 ORTHO05D017031 3.2e-10 69.7 82 43.9
FAN22G1483 Fragaria x ananassa HOM05D005863 ORTHO05D017031 3.2e-10 69.7 82 43.9
FvH4_4g25060 Fragaria vesca HOM05D005863 ORTHO05D017031 4.1e-10 69.3 82 42.7
Gorai.013G152000 Gossypium raimondii HOM05D005863 ORTHO05D003355 4.1e-10 69.3 89 39.3
MBI14_g22553_MAGBIO Magnolia biondii HOM05D005863 ORTHO05D003355 4.1e-10 69.3 82 42.7
Gohir.A13G132200 Gossypium hirsutum HOM05D005863 ORTHO05D003355 5.4e-10 68.9 89 39.3
Gohir.D13G135600 Gossypium hirsutum HOM05D005863 ORTHO05D003355 5.4e-10 68.9 89 39.3
Potri.007G102500 Populus trichocarpa HOM05D005863 ORTHO05D003355 5.4e-10 68.9 81 40.7
Sabra07G0084200 Salix brachista HOM05D005863 ORTHO05D003355 7.1e-10 68.6 80 42.5
THA.LOC104808433 Tarenaya hassleriana HOM05D008497 ORTHO05D003355 7.1e-10 68.6 67 46.3
THA.LOC104825537 Tarenaya hassleriana HOM05D008497 ORTHO05D003355 7.1e-10 68.6 67 46.3
arahy.Tifrunner.gnm1.ann1.VN6XRW Arachis hypogaea HOM05D015529 ORTHO05D015409 9.2e-10 68.2 71 45.1
vmacro09646 Vaccinium macrocarpon HOM05D005863 ORTHO05D003355 9.2e-10 68.2 101 33.7
FAN07G0148 Fragaria x ananassa HOM05D005863 ORTHO05D017031 1.2e-09 67.8 82 42.7
THA.LOC104825538 Tarenaya hassleriana HOM05D008497 ORTHO05D003355 1.2e-09 67.8 69 46.4
FAN17G1935 Fragaria x ananassa HOM05D005863 ORTHO05D017031 1.6e-09 67.4 82 43.9
Actinidia37152 Actinidia chinensis HOM05D005863 ORTHO05D003355 2.1e-09 67.0 82 36.6
arahy.Tifrunner.gnm1.ann1.1NC23U Arachis hypogaea HOM05D015529 ORTHO05D015409 2.1e-09 67.0 64 46.9
TAR629G0397 Trochodendron aralioides HOM05D005863 ORTHO05D003355 2.7e-09 66.6 134 31.3
Thhalv10028182m.g Eutrema salsugineum HOM05D008497 ORTHO05D003355 4.6e-09 65.9 92 38.0
Lsat_1_v5_gn_7_114301 Lactuca sativa HOM05D005863 ORTHO05D003355 6.0e-09 65.5 82 34.1
PSO339G2613 Papaver somniferum HOM05D005863 ORTHO05D003355 6.0e-09 65.5 84 34.5
PSO384G3490 Papaver somniferum HOM05D005863 ORTHO05D003355 6.0e-09 65.5 84 34.5
ECA233G0282 Erigeron canadensis HOM05D007119 ORTHO05D009220 7.8e-09 65.1 59 49.2
HanXRQChr11g0334111 Helianthus annuus HOM05D005863 ORTHO05D003355 7.8e-09 65.1 130 30.8
Thecc.07G012300 Theobroma cacao HOM05D005863 ORTHO05D003355 1.0e-08 64.7 135 30.4
Ah.03g133620 Amaranthus hybridus HOM05D001489 ORTHO05D001380 1.3e-08 64.3 85 34.1
QL08p003943 Quercus lobata HOM05D014719 ORTHO05D003355 1.3e-08 64.3 163 30.1
Nn1g07525 Nelumbo nucifera HOM05D005863 ORTHO05D003355 2.3e-08 63.5 82 37.8
GSVIVG01014696001 Vitis vinifera HOM05D005863 ORTHO05D003355 2.3e-08 63.5 82 37.8
EL10Ac4g07554 Beta vulgaris HOM05D038882 ORTHO05D003355 3.0e-08 63.2 130 31.5
Thhalv10027990m.g Eutrema salsugineum HOM05D008497 ORTHO05D003355 3.0e-08 63.2 86 32.6
Sc16g0008130 Simmondsia chinensis HOM05D005863 ORTHO05D003355 3.0e-08 63.2 82 40.2
TWI38G1195 Tripterygium wilfordii HOM05D005863 ORTHO05D003355 3.9e-08 62.8 81 35.8
unitig_899.g14722 Utricularia gibba HOM05D012928 ORTHO05D003355 3.9e-08 62.8 51 52.9
Ciclev10008896m.g Citrus clementina HOM05D005863 ORTHO05D003355 5.1e-08 62.4 176 28.4
Pp3c7_5750 Physcomitrium patens HOM05D008497 ORTHO05D003355 5.1e-08 62.4 72 33.3
arahy.Tifrunner.gnm1.ann1.5I91Y5 Arachis hypogaea HOM05D015529 ORTHO05D015409 6.6e-08 62.0 156 26.9
Sp1g41465 Schrenkiella parvula HOM05D012516 ORTHO05D003355 8.6e-08 61.6 84 35.7
Actinidia30696 Actinidia chinensis HOM05D005863 ORTHO05D003355 1.1e-07 61.2 58 51.7
Migut.A01086 Erythranthe guttata HOM05D005863 ORTHO05D003355 1.1e-07 61.2 127 28.3
SGA_v2.0_scaffold171G38860 Striga asiatica HOM05D005863 ORTHO05D003355 1.1e-07 61.2 78 38.5
FvH4_1g28370 Fragaria vesca HOM05D014719 ORTHO05D003355 1.5e-07 60.8 82 41.5
RcHm_v2.0_Chr3g0496661 Rosa chinensis HOM05D014719 ORTHO05D003355 1.5e-07 60.8 84 36.9
A05p17260 Brassica napus HOM05D012516 ORTHO05D003355 4.3e-07 59.3 127 29.9
BraA05t20625Z Brassica rapa HOM05D012516 ORTHO05D003355 4.3e-07 59.3 84 33.3
Rhsim04G0012300 Rhododendron simsii HOM05D005863 ORTHO05D003355 4.3e-07 59.3 85 31.8
BcaB02g10795 Brassica carinata HOM05D012516 ORTHO05D003355 5.6e-07 58.9 84 31.0
Cpa.g.sc12.119 Carica papaya HOM05D005863 ORTHO05D003355 5.6e-07 58.9 84 35.7
Hma1.2p1_2829F.1_g329210 Hydrangea macrophylla HOM05D005863 ORTHO05D003355 5.6e-07 58.9 95 32.6
CARHR174360 Cardamine hirsuta HOM05D005863 ORTHO05D003355 7.3e-07 58.5 60 43.3
Oeu038657.1 Olea europaea HOM05D012928 ORTHO05D003355 7.3e-07 58.5 48 54.2
SalBow6G1550 Salvia bowleyana HOM05D005863 ORTHO05D003355 7.3e-07 58.5 138 31.9
Aa31sc46G40 Aethionema arabicum HOM05D005863 ORTHO05D003355 9.6e-07 58.2 149 28.9
Nitab4.5_0001159g0240 Nicotiana tabacum HOM05D005863 ORTHO05D003355 9.6e-07 58.2 68 33.8
CSS0034444 Camellia sinensis var. sinensis HOM05D000747 ORTHO05D001683 1.2e-06 57.8 137 29.2
AUR62005538 Chenopodium quinoa HOM05D025851 ORTHO05D044019 1.2e-06 57.8 55 45.5
Prupe.8G267500 Prunus persica HOM05D014719 ORTHO05D003355 1.6e-06 57.4 82 36.6
Cc05_g15010 Coffea canephora HOM05D005863 ORTHO05D003355 2.1e-06 57.0 85 34.1
Hund23103 Selenicereus undatus HOM05D005863 ORTHO05D003355 2.1e-06 57.0 137 28.5
Ca_25120_v3 Cicer arietinum L. HOM05D013281 ORTHO05D015409 3.6e-06 56.2 81 38.3
CsaV3_7G011440 Cucumis sativus L. HOM05D031146 ORTHO05D003355 3.6e-06 56.2 62 37.1
C06p16270 Brassica napus HOM05D012516 ORTHO05D003355 4.7e-06 55.8 141 27.7
BolC6t36826H Brassica oleracea HOM05D012516 ORTHO05D003355 4.7e-06 55.8 141 27.7
CDE02G3774 Ceratophyllum demersum HOM05D005863 ORTHO05D003355 6.2e-06 55.5 57 43.9
Peaxi162Scf01762g00013 Petunia axillaris HOM05D005863 ORTHO05D003355 6.2e-06 55.5 68 33.8
HPP92_003025 Vanilla planifolia HOM05D048574 ORTHO05D003355 6.2e-06 55.5 84 36.9
SalBow8G3261 Salvia bowleyana HOM05D005863 ORTHO05D003355 8.1e-06 55.1 84 36.9


User provided reference genes

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