Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp7g04740 Schrenkiella parvula HOM05D004487 ORTHO05D005483 3.8e-118 428.3 236 100.0
Thhalv10027902m.g Eutrema salsugineum HOM05D004487 ORTHO05D005483 5.1e-91 338.2 242 76.0
CARHR215520 Cardamine hirsuta HOM05D004487 ORTHO05D005483 9.0e-88 327.4 238 77.3
Aa31LG6G15640 Aethionema arabicum HOM05D004487 ORTHO05D005483 1.1e-85 320.5 237 71.3
AL7G11780 Arabidopsis lyrata HOM05D004487 ORTHO05D005483 3.2e-85 318.9 236 73.3
BcaC02g09572 Brassica carinata HOM05D004487 ORTHO05D005483 6.3e-81 304.7 237 73.0
C04p44290 Brassica napus HOM05D004487 ORTHO05D005483 4.1e-80 302.0 232 73.3
BolC4t26003H Brassica oleracea HOM05D004487 ORTHO05D005483 1.5e-79 300.1 242 70.7
Carub.0007s0150 Capsella rubella HOM05D004487 ORTHO05D005483 7.7e-79 297.7 238 70.2
BcaB06g27071 Brassica carinata HOM05D004487 ORTHO05D005483 5.0e-78 295.0 231 75.3
A04p10610 Brassica napus HOM05D004487 ORTHO05D005483 8.5e-78 294.3 232 72.4
BraA04t16724Z Brassica rapa HOM05D004487 ORTHO05D005483 3.7e-73 278.9 236 69.5
CARHR247100 Cardamine hirsuta HOM05D004487 ORTHO05D005483 3.4e-71 272.3 238 71.8
AT4G39630 Arabidopsis thaliana HOM05D004487 ORTHO05D005483 5.5e-69 265.0 236 63.6
THA.LOC104807718 Tarenaya hassleriana HOM05D004487 ORTHO05D005483 1.5e-61 240.4 241 55.2
Thecc.01G110300 Theobroma cacao HOM05D004487 ORTHO05D005483 3.1e-56 222.6 238 52.9
Atru.chr3.204 Acer truncatum HOM05D004487 ORTHO05D005483 5.9e-55 218.4 193 58.0
Gorai.007G062000 Gossypium raimondii HOM05D004487 ORTHO05D005483 1.3e-54 217.2 238 51.3
TWI74G0090 Tripterygium wilfordii HOM05D004487 ORTHO05D005483 2.2e-54 216.5 238 51.3
Duzib147G1438 Durio zibethinus HOM05D004487 ORTHO05D005483 2.9e-54 216.1 233 51.9
Gohir.D11G056800 Gossypium hirsutum HOM05D004487 ORTHO05D005483 1.5e-53 213.8 238 50.8
Gohir.A11G053300 Gossypium hirsutum HOM05D004487 ORTHO05D005483 7.2e-53 211.5 238 50.4
Ciclev10026392m.g Citrus clementina HOM05D004487 ORTHO05D005483 1.2e-52 210.7 233 47.2
COL.COLO4_11036 Corchorus olitorius HOM05D004487 ORTHO05D005483 6.1e-52 208.4 233 48.9
Sp7g36260 Schrenkiella parvula HOM05D004487 ORTHO05D005483 8.8e-51 204.5 233 54.9
QL06p033465 Quercus lobata HOM05D004487 ORTHO05D005483 3.4e-50 202.6 234 50.9
MD01G1016500 Malus domestica HOM05D004487 ORTHO05D005483 8.3e-49 198.0 239 49.0
Manes.12G140400 Manihot esculenta HOM05D004487 ORTHO05D005483 2.4e-48 196.4 238 50.0
Nn8g40276 Nelumbo nucifera HOM05D004487 ORTHO05D005483 4.1e-48 195.7 194 54.1
CiPaw.04G093900 Carya illinoinensis HOM05D004487 ORTHO05D005483 7.7e-47 191.4 245 49.4
Prupe.8G078400 Prunus persica HOM05D004487 ORTHO05D005483 1.0e-46 191.0 194 54.6
Lj3g0008934 Lotus japonicus HOM05D004487 ORTHO05D005483 1.3e-46 190.7 194 55.7
MD15G1334800 Malus domestica HOM05D004487 ORTHO05D005483 1.3e-46 190.7 239 47.7
Potri.007G085100 Populus trichocarpa HOM05D004487 ORTHO05D005483 1.3e-46 190.7 238 50.0
Lalb_Chr11g0075201 Lupinus albus HOM05D004487 ORTHO05D005483 2.2e-46 189.9 234 48.7
TAR625G1215 Trochodendron aralioides HOM05D004487 ORTHO05D005483 3.8e-46 189.1 193 51.3
Sabra07G0070400 Salix brachista HOM05D004487 ORTHO05D005483 6.5e-46 188.3 236 49.2
Ca_23004_v3 Cicer arietinum L. HOM05D004487 ORTHO05D005483 1.5e-45 187.2 237 49.4
Nn2g14563 Nelumbo nucifera HOM05D004487 ORTHO05D005483 1.5e-45 187.2 243 46.5
RcHm_v2.0_Chr2g0115971 Rosa chinensis HOM05D004487 ORTHO05D005483 3.2e-45 186.0 234 47.0
AUR62005250 Chenopodium quinoa HOM05D004487 ORTHO05D005483 7.2e-45 184.9 193 49.7
AUR62000713 Chenopodium quinoa HOM05D004487 ORTHO05D005483 2.1e-44 183.3 194 50.0
Ca_25628_v3 Cicer arietinum L. HOM05D004487 ORTHO05D005483 3.6e-44 182.6 235 47.2
Gohir.1Z049552 Gossypium hirsutum HOM05D004487 ORTHO05D005483 3.6e-44 182.6 177 54.2
CANSAT01G2370 Cannabis sativa HOM05D004487 ORTHO05D005483 6.1e-44 181.8 194 53.1
arahy.Tifrunner.gnm1.ann1.0Q3DRY Arachis hypogaea HOM05D004487 ORTHO05D005483 1.4e-43 180.6 195 50.8
Solyc03g019910.3 Solanum lycopersicum HOM05D004487 ORTHO05D005483 1.4e-43 180.6 238 46.6
Haze_05964 Corylus avellana HOM05D004487 ORTHO05D005483 3.0e-43 179.5 264 43.2
EL10Ac4g09863 Beta vulgaris HOM05D004487 ORTHO05D005483 4.0e-43 179.1 224 45.5
CAN.G861.28 Capsicum annuum HOM05D004487 ORTHO05D005483 4.0e-43 179.1 232 45.7
ClCG01G019130 Citrullus lanatus HOM05D004487 ORTHO05D005483 4.0e-43 179.1 235 46.0
Nitab4.5_0007717g0020 Nicotiana tabacum HOM05D004487 ORTHO05D005483 4.0e-43 179.1 234 45.3
Sopen03g029710 Solanum pennellii HOM05D004487 ORTHO05D005483 4.0e-43 179.1 238 45.8
Rhsim05G0180000 Rhododendron simsii HOM05D004487 ORTHO05D005483 5.2e-43 178.7 232 44.0
Cc02_g15410 Coffea canephora HOM05D004487 ORTHO05D005483 6.8e-43 178.3 194 51.5
MELO3C007790.2 Cucumis melo HOM05D004487 ORTHO05D005483 8.8e-43 177.9 236 47.0
Migut.H01422 Erythranthe guttata HOM05D004487 ORTHO05D005483 1.2e-42 177.6 237 46.8
GSVIVG01022203001 Vitis vinifera HOM05D004487 ORTHO05D005483 1.2e-42 177.6 239 44.4
FvH4_1g21950 Fragaria vesca HOM05D004487 ORTHO05D005483 1.5e-42 177.2 233 43.3
Nitab4.5_0001495g0020 Nicotiana tabacum HOM05D004487 ORTHO05D005483 2.0e-42 176.8 234 44.9
CsaV3_6G045820 Cucumis sativus L. HOM05D004487 ORTHO05D005483 2.6e-42 176.4 236 46.2
Prupe.6G176600 Prunus persica HOM05D004487 ORTHO05D005483 3.4e-42 176.0 239 46.0
arahy.Tifrunner.gnm1.ann1.Z7G166 Arachis hypogaea HOM05D004487 ORTHO05D005483 4.4e-42 175.6 194 50.0
arahy.Tifrunner.gnm1.ann1.NRP8RH Arachis hypogaea HOM05D004487 ORTHO05D005483 5.7e-42 175.3 195 49.7
CsaV3_5G036000 Cucumis sativus L. HOM05D004487 ORTHO05D005483 5.7e-42 175.3 239 44.8
vmacro21317 Vaccinium macrocarpon HOM05D004487 ORTHO05D005483 5.7e-42 175.3 241 46.1
FAN19G1427 Fragaria x ananassa HOM05D004487 ORTHO05D005483 9.8e-42 174.5 233 42.5
FAN23G0375 Fragaria x ananassa HOM05D004487 ORTHO05D005483 9.8e-42 174.5 233 42.5
Lsat_1_v5_gn_2_120680 Lactuca sativa HOM05D004487 ORTHO05D005483 9.8e-42 174.5 206 48.5
PGSC0003DMG400015213 Solanum tuberosum HOM05D004487 ORTHO05D005483 9.8e-42 174.5 238 45.0
Peaxi162Scf00171g00006 Petunia axillaris HOM05D004487 ORTHO05D005483 1.3e-41 174.1 247 42.9
PGR004G1100 Punica granatum HOM05D004487 ORTHO05D005483 2.2e-41 173.3 188 47.9
arahy.Tifrunner.gnm1.ann1.10QJ8K Arachis hypogaea HOM05D004487 ORTHO05D005483 3.7e-41 172.6 195 49.2
vmacro18624 Vaccinium macrocarpon HOM05D004487 ORTHO05D005483 4.9e-41 172.2 193 50.3
Glyma.15G199500 Glycine max HOM05D004487 ORTHO05D005483 6.3e-41 171.8 234 45.7
TPR.G33715 Trifolium pratense HOM05D004487 ORTHO05D005483 1.4e-40 170.6 236 45.3
Oeu040918.3 Olea europaea HOM05D004487 ORTHO05D005483 1.8e-40 170.2 286 39.5
MSTRG.14740 Avicennia marina HOM05D004487 ORTHO05D005483 2.4e-40 169.9 236 43.6
FvH4_1g25670 Fragaria vesca HOM05D004487 ORTHO05D005483 2.4e-40 169.9 228 44.3
Potri.005G082500 Populus trichocarpa HOM05D004487 ORTHO05D005483 1.2e-39 167.5 235 45.1
FAN26G2580 Fragaria x ananassa HOM05D004487 ORTHO05D005483 1.6e-39 167.2 233 41.2
FAN28G1272 Fragaria x ananassa HOM05D004487 ORTHO05D005483 1.6e-39 167.2 192 46.9
FAN28G1914 Fragaria x ananassa HOM05D004487 ORTHO05D005483 1.6e-39 167.2 192 46.9
CSS0025780 Camellia sinensis var. sinensis HOM05D004487 ORTHO05D005483 2.0e-39 166.8 236 44.1
HanXRQChr14g0458831 Helianthus annuus HOM05D004487 ORTHO05D005483 2.0e-39 166.8 234 44.0
FAN19G3081 Fragaria x ananassa HOM05D004487 ORTHO05D005483 2.7e-39 166.4 230 43.5
ECA238G1615 Erigeron canadensis HOM05D004487 ORTHO05D005483 4.5e-39 165.6 235 43.4
arahy.Tifrunner.gnm1.ann1.7417N6 Arachis hypogaea HOM05D004487 ORTHO05D005483 1.3e-38 164.1 195 47.2
ClCG05G021300 Citrullus lanatus HOM05D004487 ORTHO05D005483 1.7e-38 163.7 234 45.3
MELO3C012399.2 Cucumis melo HOM05D004487 ORTHO05D005483 1.7e-38 163.7 254 44.1
Glyma.09G092600 Glycine max HOM05D004487 ORTHO05D005483 2.3e-38 163.3 235 45.1
Phvul.009G211400 Phaseolus vulgaris HOM05D004487 ORTHO05D005483 2.3e-38 163.3 233 43.3
DCAR_014253 Daucus carota HOM05D004487 ORTHO05D005483 5.0e-38 162.2 194 45.4
Nitab4.5_0000477g0120 Nicotiana tabacum HOM05D004487 ORTHO05D005483 1.5e-37 160.6 187 48.1
arahy.Tifrunner.gnm1.ann1.S1NDRU Arachis hypogaea HOM05D004487 ORTHO05D005483 1.2e-36 157.5 195 45.6
MBI04_g31212_MAGBIO Magnolia biondii HOM05D004487 ORTHO05D005483 1.2e-36 157.5 227 41.4
arahy.Tifrunner.gnm1.ann1.32WU9K Arachis hypogaea HOM05D004487 ORTHO05D005483 1.6e-36 157.1 195 46.2
unitig_22.g6757 Utricularia gibba HOM05D004487 ORTHO05D005483 4.7e-36 155.6 197 48.7
Actinidia08329 Actinidia chinensis HOM05D004487 ORTHO05D005483 8.0e-36 154.8 160 47.5
Eucgr.I00528 Eucalyptus grandis HOM05D004487 ORTHO05D005483 2.3e-35 153.3 244 39.8
Hma1.2p1_0486F.1_g163280 Hydrangea macrophylla HOM05D004487 ORTHO05D005483 4.0e-35 152.5 191 46.6
Sc16g0008840 Simmondsia chinensis HOM05D004487 ORTHO05D005483 4.0e-35 152.5 192 44.8
SGA_v2.0_scaffold106G30591 Striga asiatica HOM05D004487 ORTHO05D005483 8.9e-35 151.4 190 48.4
arahy.Tifrunner.gnm1.ann1.9RVJ5A Arachis hypogaea HOM05D004487 ORTHO05D005483 2.0e-34 150.2 192 45.8
Aqoxy2G03854 Aquilegia oxysepala HOM05D004487 ORTHO05D005483 3.4e-34 149.4 194 46.4
Psat2g176760 Pisum sativum HOM05D004487 ORTHO05D005483 9.8e-34 147.9 234 41.5
Ah.04g161200 Amaranthus hybridus HOM05D004487 ORTHO05D005483 2.9e-33 146.4 193 43.0
Lj2A942G27 Lonicera japonica HOM05D004487 ORTHO05D005483 2.9e-33 146.4 197 47.2
arahy.Tifrunner.gnm1.ann1.Y72RXW Arachis hypogaea HOM05D004487 ORTHO05D005483 3.7e-33 146.0 195 44.6
TAR626G1474 Trochodendron aralioides HOM05D004487 ORTHO05D005483 3.7e-33 146.0 192 45.3
Nitab4.5_0007222g0010 Nicotiana tabacum HOM05D004487 ORTHO05D005483 1.2e-31 141.0 224 41.5
TPR.G36682 Trifolium pratense HOM05D005330 ORTHO05D006489 1.6e-31 140.6 234 41.9
VMungo1309G0247 Vigna mungo HOM05D004487 ORTHO05D005483 2.0e-31 140.2 233 39.9
arahy.Tifrunner.gnm1.ann1.L7ETT7 Arachis hypogaea HOM05D004487 ORTHO05D005483 7.3e-29 131.7 174 44.3
Sabra05G0067500 Salix brachista HOM05D004487 ORTHO05D005483 9.5e-29 131.3 193 42.5
Zm00001eb192330 Zea mays HOM05D004487 ORTHO05D005483 3.1e-27 126.3 191 42.9
arahy.Tifrunner.gnm1.ann1.I45DC0 Arachis hypogaea HOM05D004487 ORTHO05D005483 8.9e-27 124.8 187 40.1
Os08g0290400 Oryza sativa ssp. japonica HOM05D004487 ORTHO05D005483 4.4e-26 122.5 194 39.7
Actinidia33369 Actinidia chinensis HOM05D004487 ORTHO05D005483 7.5e-26 121.7 173 41.0
Lj2A929T16 Lonicera japonica HOM05D004487 ORTHO05D005483 1.3e-25 120.9 241 37.8
CDE04G3174 Ceratophyllum demersum HOM05D004487 ORTHO05D005483 2.9e-25 119.8 231 36.8
Dinv13358 Davidia involucrata HOM05D004487 ORTHO05D005483 1.9e-24 117.1 119 50.4
ATR0210G008 Amborella trichopoda HOM05D004487 ORTHO05D005483 7.0e-24 115.2 238 34.0
Lj4A903G12 Lonicera japonica HOM05D004487 ORTHO05D005483 1.6e-23 114.0 186 44.6
HPP92_005242 Vanilla planifolia HOM05D004487 ORTHO05D005483 1.6e-23 114.0 227 34.8
HanXRQChr07g0202331 Helianthus annuus HOM05D004487 ORTHO05D005483 4.6e-23 112.5 163 39.9
Hma1.2p1_0375F.1_g138570 Hydrangea macrophylla HOM05D004487 ORTHO05D005483 4.6e-23 112.5 122 50.8
arahy.Tifrunner.gnm1.ann1.4M30AQ Arachis hypogaea HOM05D004487 ORTHO05D005483 1.0e-22 111.3 171 43.3
Dinv05687 Davidia involucrata HOM05D004487 ORTHO05D005483 2.3e-22 110.2 124 48.4
Lj6g0018564 Lotus japonicus HOM05D004487 ORTHO05D005483 2.3e-22 110.2 97 58.8
arahy.Tifrunner.gnm1.ann1.ZIF87W Arachis hypogaea HOM05D004487 ORTHO05D005483 5.0e-22 109.0 173 37.0
SEGI_02201 Sequoiadendron giganteum HOM05D004487 ORTHO05D005483 8.6e-22 108.2 207 36.7
SHI54251 Sapria himalayana HOM05D004487 ORTHO05D005483 2.5e-21 106.7 239 36.0
TWI53G0384 Tripterygium wilfordii HOM05D004487 ORTHO05D005483 1.8e-19 100.5 193 36.3
FAN26G0673 Fragaria x ananassa HOM05D004487 ORTHO05D005483 4.9e-17 92.4 140 40.0
Sed0026038 Sechium edule HOM05D004487 ORTHO05D005483 1.1e-16 91.3 168 36.3
CSS0002847 Camellia sinensis var. sinensis HOM05D004487 ORTHO05D005483 1.6e-15 87.4 95 52.6
CDE04G3300 Ceratophyllum demersum HOM05D004487 ORTHO05D005483 3.5e-15 86.3 167 37.7
Psat4g139880 Pisum sativum HOM05D004487 ORTHO05D005483 1.1e-13 81.3 133 36.8
Psat4g139920 Pisum sativum HOM05D004487 ORTHO05D005483 1.9e-13 80.5 133 37.6
BcaNung00884 Brassica carinata HOM05D004487 ORTHO05D032747 3.6e-12 76.3 77 54.5
arahy.Tifrunner.gnm1.ann1.3C43J1 Arachis hypogaea HOM05D004487 ORTHO05D005483 2.3e-11 73.6 84 45.2
arahy.Tifrunner.gnm1.ann1.PFH739 Arachis hypogaea HOM05D004487 ORTHO05D005483 1.2e-10 71.2 92 40.2
Lalb_Chr12g0203581 Lupinus albus HOM05D004487 ORTHO05D005483 1.5e-10 70.9 66 54.5
arahy.Tifrunner.gnm1.ann1.RJV3W7 Arachis hypogaea HOM05D004487 ORTHO05D005483 3.4e-10 69.7 84 42.9
arahy.Tifrunner.gnm1.ann1.PL6VNF Arachis hypogaea HOM05D004487 ORTHO05D005483 4.4e-10 69.3 92 39.1
CDE06G2627 Ceratophyllum demersum HOM05D004487 ORTHO05D005483 5.8e-10 68.9 133 37.6
Oeu043116.1 Olea europaea HOM05D004487 ORTHO05D005483 4.9e-09 65.9 154 31.8
BraA01t00060Z Brassica rapa HOM05D004487 ORTHO05D032747 4.1e-08 62.8 119 37.8
arahy.Tifrunner.gnm1.ann1.94164M Arachis hypogaea HOM05D004487 ORTHO05D005483 2.7e-07 60.1 61 49.2
arahy.Tifrunner.gnm1.ann1.02EUR6 Arachis hypogaea HOM05D004487 ORTHO05D005483 3.5e-07 59.7 120 29.2
CSS0015836 Camellia sinensis var. sinensis HOM05D004487 ORTHO05D005483 3.5e-07 59.7 33 84.8
CSS0022213 Camellia sinensis var. sinensis HOM05D004487 ORTHO05D005483 3.5e-07 59.7 33 84.8
arahy.Tifrunner.gnm1.ann1.FJ4QJG Arachis hypogaea HOM05D004487 ORTHO05D005483 4.6e-07 59.3 61 49.2
A01p00530 Brassica napus HOM05D004487 ORTHO05D032747 4.6e-07 59.3 46 65.2
SGA_v2.0_scaffold83G26423 Striga asiatica HOM05D004487 ORTHO05D005483 1.3e-06 57.8 76 43.4


User provided reference genes

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