Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp7g04480 Schrenkiella parvula HOM05D005365 ORTHO05D006910 0.0e+00 1978.0 1052 100.0
Thhalv10027629m.g Eutrema salsugineum HOM05D005365 ORTHO05D006910 0.0e+00 1787.3 1051 91.1
A04p10780 Brassica napus HOM05D005365 ORTHO05D006910 0.0e+00 1772.3 1052 90.2
BraA04t16742Z Brassica rapa HOM05D005365 ORTHO05D006910 0.0e+00 1772.3 1052 90.2
BolC4t26020H Brassica oleracea HOM05D005365 ORTHO05D006910 0.0e+00 1766.5 1061 89.5
BcaB06g27110 Brassica carinata HOM05D005365 ORTHO05D006910 0.0e+00 1765.0 1052 89.6
BcaC02g09592 Brassica carinata HOM05D005365 ORTHO05D006910 0.0e+00 1764.2 1061 89.4
C04p44500 Brassica napus HOM05D005365 ORTHO05D006910 0.0e+00 1753.0 1086 87.5
CARHR215230 Cardamine hirsuta HOM05D005365 ORTHO05D006910 0.0e+00 1731.1 1060 87.6
AL7G46400 Arabidopsis lyrata HOM05D005365 ORTHO05D006910 0.0e+00 1724.5 1062 87.4
AT5G37630 Arabidopsis thaliana HOM05D005365 ORTHO05D006910 0.0e+00 1699.9 1062 86.6
Carub.0007s3279 Capsella rubella HOM05D005365 ORTHO05D006910 0.0e+00 1681.0 1070 85.0
Aa31LG9G17470 Aethionema arabicum HOM05D005365 ORTHO05D006910 0.0e+00 1611.7 1060 81.3
THA.LOC104805627 Tarenaya hassleriana HOM05D005365 ORTHO05D006910 0.0e+00 1441.8 1067 73.9
Cfa007794 Carpinus fangiana HOM05D005365 ORTHO05D006910 0.0e+00 1185.2 1025 62.6
Cpa.g.sc116.71 Carica papaya HOM05D005365 ORTHO05D006910 0.0e+00 1181.4 1052 62.1
Gorai.007G187500 Gossypium raimondii HOM05D005365 ORTHO05D006910 0.0e+00 1179.1 1055 61.1
Atru.chr1.1986 Acer truncatum HOM05D005365 ORTHO05D006910 0.0e+00 1174.5 1047 61.4
Ciclev10010965m.g Citrus clementina HOM05D005365 ORTHO05D006910 0.0e+00 1167.9 1052 61.3
Prupe.3G017700 Prunus persica HOM05D005365 ORTHO05D006910 0.0e+00 1161.4 1049 60.8
CiPaw.03G073200 Carya illinoinensis HOM05D005365 ORTHO05D006910 0.0e+00 1159.4 1053 61.9
Potri.004G085500 Populus trichocarpa HOM05D005365 ORTHO05D006910 0.0e+00 1159.4 1055 60.9
Duzib133G0311 Durio zibethinus HOM05D005365 ORTHO05D006910 0.0e+00 1159.1 1058 60.2
Haze_14277 Corylus avellana HOM05D005365 ORTHO05D006910 0.0e+00 1150.6 1023 61.9
Lj2C520T1 Lonicera japonica HOM05D005365 ORTHO05D006910 0.0e+00 1144.4 1052 59.9
TWI77G0914 Tripterygium wilfordii HOM05D005365 ORTHO05D006910 0.0e+00 1135.2 1000 61.1
Thecc.04G055200 Theobroma cacao HOM05D005365 ORTHO05D006910 0.0e+00 1134.4 978 62.2
MD09G1270700 Malus domestica HOM05D005365 ORTHO05D006910 0.0e+00 1132.5 1047 59.6
CSS0031268 Camellia sinensis var. sinensis HOM05D005365 ORTHO05D006910 0.0e+00 1131.3 1058 59.3
QL02p059099 Quercus lobata HOM05D005365 ORTHO05D006910 0.0e+00 1128.2 1157 55.8
Dinv19044 Davidia involucrata HOM05D005365 ORTHO05D006910 0.0e+00 1126.3 1054 59.3
MD17G1268900 Malus domestica HOM05D005365 ORTHO05D006910 0.0e+00 1125.9 1047 60.0
Manes.03G027200 Manihot esculenta HOM05D005365 ORTHO05D006910 0.0e+00 1123.2 1039 60.2
TAR374G0610 Trochodendron aralioides HOM05D005365 ORTHO05D006910 0.0e+00 1119.4 1058 58.7
CANSAT80G2352 Cannabis sativa HOM05D005365 ORTHO05D006910 0.0e+00 1118.2 1041 59.5
Actinidia06487 Actinidia chinensis HOM05D005365 ORTHO05D006910 0.0e+00 1105.5 1059 57.8
Gohir.D11G174900 Gossypium hirsutum HOM05D005365 ORTHO05D006910 0.0e+00 1104.4 941 62.6
GSVIVG01014028001 Vitis vinifera HOM05D005365 ORTHO05D006910 0.0e+00 1103.6 1054 58.2
FAN26G1336 Fragaria x ananassa HOM05D005365 ORTHO05D006910 0.0e+00 1097.0 1040 58.6
Glyma.11G215600 Glycine max HOM05D005365 ORTHO05D006910 0.0e+00 1095.9 1051 57.8
Sabra04G0056600 Salix brachista HOM05D005365 ORTHO05D006910 0.0e+00 1095.1 1054 59.0
Glyma.18G041000 Glycine max HOM05D005365 ORTHO05D006910 0.0e+00 1094.3 1051 57.5
FAN19G1822 Fragaria x ananassa HOM05D005365 ORTHO05D006910 0.0e+00 1093.6 1014 60.5
Nn4g24353 Nelumbo nucifera HOM05D005365 ORTHO05D006910 0.0e+00 1093.2 1055 57.3
Lj6g0003323 Lotus japonicus HOM05D005365 ORTHO05D006910 0.0e+00 1092.0 972 59.6
RcHm_v2.0_Chr3g0491161 Rosa chinensis HOM05D005365 ORTHO05D006910 0.0e+00 1087.8 1052 58.3
VMungo1383G2900 Vigna mungo HOM05D005365 ORTHO05D006910 0.0e+00 1087.8 1050 57.4
Eucgr.F02871 Eucalyptus grandis HOM05D005365 ORTHO05D006910 0.0e+00 1086.6 1056 58.6
Phvul.001G229600 Phaseolus vulgaris HOM05D005365 ORTHO05D006910 0.0e+00 1086.6 1048 57.7
Lalb_Chr15g0084951 Lupinus albus HOM05D005365 ORTHO05D006910 0.0e+00 1084.7 1050 58.7
arahy.Tifrunner.gnm1.ann1.WJY350 Arachis hypogaea HOM05D005365 ORTHO05D006910 0.0e+00 1083.9 1057 56.6
CsaV3_5G023940 Cucumis sativus L. HOM05D005365 ORTHO05D006910 0.0e+00 1083.9 1038 56.8
ClCG03G008820 Citrullus lanatus HOM05D005365 ORTHO05D006910 0.0e+00 1080.9 1035 57.3
PSO478G2448 Papaver somniferum HOM05D005365 ORTHO05D006910 0.0e+00 1080.5 1045 57.9
vmacro07709 Vaccinium macrocarpon HOM05D005365 ORTHO05D006910 0.0e+00 1079.3 1031 59.2
PSO017G3744 Papaver somniferum HOM05D005365 ORTHO05D006910 0.0e+00 1076.2 1045 58.0
Hma1.2p1_1583F.1_g291990 Hydrangea macrophylla HOM05D005365 ORTHO05D006910 0.0e+00 1075.5 973 60.3
Cc07_g13300 Coffea canephora HOM05D005365 ORTHO05D006910 5.0e-311 1071.2 1048 57.4
MELO3C022831.2 Cucumis melo HOM05D005365 ORTHO05D006910 5.0e-311 1071.2 1049 56.1
Solyc11g011370.2 Solanum lycopersicum HOM05D005365 ORTHO05D006910 4.2e-310 1068.1 1013 57.3
arahy.Tifrunner.gnm1.ann1.MH7SY7 Arachis hypogaea HOM05D005365 ORTHO05D006910 9.3e-310 1067.0 1057 55.6
Sopen11g006160 Solanum pennellii HOM05D005365 ORTHO05D006910 1.2e-309 1066.6 1013 57.2
EL10Ac2g03189 Beta vulgaris HOM05D005365 ORTHO05D006910 2.1e-309 1065.8 1055 56.7
AUR62018225 Chenopodium quinoa HOM05D005365 ORTHO05D006910 1.0e-308 1063.5 1054 56.5
CSS0046739 Camellia sinensis var. sinensis HOM05D005365 ORTHO05D006910 1.1e-307 1060.1 1058 57.2
Nitab4.5_0012785g0010 Nicotiana tabacum HOM05D005365 ORTHO05D006910 3.3e-307 1058.5 1055 56.2
Ca_17092_v3 Cicer arietinum L. HOM05D005365 ORTHO05D006910 7.4e-307 1057.4 1061 55.5
Psat5g120520 Pisum sativum HOM05D005365 ORTHO05D006910 3.1e-305 1052.0 1025 57.1
CAN.G222.54 Capsicum annuum HOM05D005365 ORTHO05D006910 5.3e-305 1051.2 1014 57.2
MSTRG.15661 Avicennia marina HOM05D005365 ORTHO05D006910 7.6e-304 1047.3 1045 55.9
Aqoxy2G03929 Aquilegia oxysepala HOM05D005365 ORTHO05D006910 9.9e-304 1047.0 1056 54.9
Medtr3g065300 Medicago truncatula HOM05D005365 ORTHO05D006910 4.9e-303 1044.6 1054 56.0
PGR004G1341 Punica granatum HOM05D005365 ORTHO05D006910 7.1e-302 1040.8 1054 55.5
Peaxi162Scf00562g00038 Petunia axillaris HOM05D005365 ORTHO05D006910 1.2e-301 1040.0 1047 55.9
ECA238G2923 Erigeron canadensis HOM05D005365 ORTHO05D006910 1.8e-300 1036.2 1042 56.6
AUR62037789 Chenopodium quinoa HOM05D005365 ORTHO05D006910 5.1e-300 1034.6 1051 55.3
Lsat_1_v5_gn_2_68700 Lactuca sativa HOM05D005365 ORTHO05D006910 1.2e-296 1023.5 1041 55.5
Migut.K00918 Erythranthe guttata HOM05D005365 ORTHO05D006910 2.5e-294 1015.8 1035 54.8
SGA_v2.0_scaffold45G17160 Striga asiatica HOM05D005365 ORTHO05D006910 1.0e-287 993.8 1084 52.9
DCAR_028454 Daucus carota HOM05D005365 ORTHO05D006910 1.1e-283 980.3 1061 53.4
Hund13093 Selenicereus undatus HOM05D005365 ORTHO05D006910 1.1e-283 980.3 1035 53.8
Ca_17099_v3 Cicer arietinum L. HOM05D005365 ORTHO05D006910 4.3e-283 978.4 1061 53.0
Zm00001eb379890 Zea mays HOM05D005365 ORTHO05D006910 6.3e-282 974.5 1061 51.5
ATR0753G168 Amborella trichopoda HOM05D005365 ORTHO05D006910 1.8e-273 946.4 1041 51.0
FvH4_1g30230 Fragaria vesca HOM05D005365 ORTHO05D006910 2.1e-261 906.4 755 63.8
Thhalv10027679m.g Eutrema salsugineum HOM05D005365 ORTHO05D006910 3.0e-260 902.5 666 78.5
MBI19_g22067_MAGBIO Magnolia biondii HOM05D005365 ORTHO05D006910 4.4e-259 898.7 1196 47.0
Gohir.A11G168700 Gossypium hirsutum HOM05D005365 ORTHO05D006910 1.3e-258 897.1 748 63.2
FAN23G0266 Fragaria x ananassa HOM05D005365 ORTHO05D006910 1.7e-258 896.7 755 63.2
Sed0006074 Sechium edule HOM05D005365 ORTHO05D006910 1.4e-257 893.6 752 63.2
Ah.10g032430 Amaranthus hybridus HOM05D005365 ORTHO05D006910 1.2e-256 890.6 788 59.3
CDE05G1264 Ceratophyllum demersum HOM05D005365 ORTHO05D006910 7.7e-256 887.9 856 56.5
Nitab4.5_0000201g0010 Nicotiana tabacum HOM05D005365 ORTHO05D006910 6.1e-253 878.2 933 52.7
Sc11g0004580 Simmondsia chinensis HOM05D005365 ORTHO05D006910 4.5e-248 862.1 763 60.3
Rhsim10G0178300 Rhododendron simsii HOM05D005365 ORTHO05D006910 9.5e-238 827.8 1054 49.8
COL.COLO4_13431 Corchorus olitorius HOM05D005365 ORTHO05D006910 7.0e-233 811.6 1051 48.2
Actinidia17204 Actinidia chinensis HOM05D005365 ORTHO05D006910 5.8e-203 712.2 636 58.5
unitig_0.g2645 Utricularia gibba HOM05D005365 ORTHO05D006910 3.0e-199 699.9 985 43.6
Dinv28185 Davidia involucrata HOM05D005365 ORTHO05D006910 9.0e-196 688.3 563 66.3
TPR.G24911 Trifolium pratense HOM05D005365 ORTHO05D006910 1.1e-193 681.4 559 62.1
PGSC0003DMG400013306 Solanum tuberosum HOM05D005365 ORTHO05D006910 3.2e-185 653.3 671 53.4
Pp3c22_14670 Physcomitrium patens HOM05D005365 ORTHO05D006910 3.8e-178 629.8 1056 38.5
HPP92_006138 Vanilla planifolia HOM05D005365 ORTHO05D006910 4.9e-178 629.4 620 55.6
SEGI_16018 Sequoiadendron giganteum HOM05D005365 ORTHO05D006910 1.2e-168 598.2 717 49.0
Mapoly0032s0119 Marchantia polymorpha HOM05D005365 ORTHO05D006910 6.9e-164 582.4 906 39.7
SMO367G0263 Selaginella moellendorffii HOM05D005365 ORTHO05D006910 2.7e-160 570.5 920 38.5
AagrBONN_evm.TU.Sc2ySwM_228.4009 Anthoceros agrestis HOM05D005365 ORTHO05D006910 8.0e-144 515.8 1020 35.0
GSVIVG01038363001 Vitis vinifera HOM05D005365 ORTHO05D006910 1.2e-139 501.9 429 60.4
SEGI_18021 Sequoiadendron giganteum HOM05D005365 ORTHO05D006910 1.2e-86 325.9 328 52.7
GSVIVG01038362001 Vitis vinifera HOM05D005365 ORTHO05D006910 1.3e-82 312.4 248 65.3
MCO13G329 Micromonas commoda HOM05D005365 ORTHO05D006910 1.3e-77 295.8 950 28.0
arahy.Tifrunner.gnm1.ann1.MFZI3Y Arachis hypogaea HOM05D005365 ORTHO05D006910 1.2e-75 289.3 303 52.1
Os06g0256000 Oryza sativa ssp. japonica HOM05D005365 ORTHO05D006910 3.7e-72 277.7 395 42.5
CBR_g39392 Chara braunii HOM05D000019 ORTHO05D000048 6.2e-72 276.9 431 40.4
SGA_v2.0_scaffold45G17195 Striga asiatica HOM05D005365 ORTHO05D006910 5.3e-71 273.9 365 41.9
Oeu012492.1 Olea europaea HOM05D005365 ORTHO05D006910 4.6e-67 260.8 797 31.7
CDE05G3412 Ceratophyllum demersum HOM05D005365 ORTHO05D006910 1.9e-65 255.4 197 64.0
Oeu012494.1 Olea europaea HOM05D005365 ORTHO05D006910 2.8e-64 251.5 245 57.6
PRCOL_00005851 Prasinoderma coloniale HOM05D005365 ORTHO05D006910 1.0e-61 243.0 809 27.7
arahy.Tifrunner.gnm1.ann1.4TMU9W Arachis hypogaea HOM05D005365 ORTHO05D006910 5.0e-61 240.7 195 60.5
MBI19_g43231_MAGBIO Magnolia biondii HOM05D005365 ORTHO05D006910 6.7e-58 230.3 239 56.5
CAN.G691.4 Capsicum annuum HOM05D005365 ORTHO05D006910 1.8e-55 222.2 294 46.3
TPR.G674 Trifolium pratense HOM05D005365 ORTHO05D006910 6.7e-42 177.2 264 49.2
GSVIVG01030692001 Vitis vinifera HOM05D005365 ORTHO05D006910 1.0e-37 163.3 140 62.9
SGA_v2.0_scaffold45G17196 Striga asiatica HOM05D005365 ORTHO05D006910 3.0e-34 151.8 104 74.0
HPP92_006139 Vanilla planifolia HOM05D005365 ORTHO05D006910 2.9e-29 135.2 282 40.8
Nn1g00453 Nelumbo nucifera HOM05D005365 ORTHO05D006910 8.0e-19 100.5 64 70.3
Gorai.005G096400 Gossypium raimondii HOM05D005365 ORTHO05D015145 3.0e-18 98.6 68 73.5
Psat1g154520 Pisum sativum HOM05D005365 ORTHO05D006910 6.8e-18 97.4 84 61.9
Gohir.D04G112220 Gossypium hirsutum HOM05D005365 ORTHO05D006910 2.0e-17 95.9 67 73.1
Thhalv10028211m.g Eutrema salsugineum HOM05D005365 ORTHO05D006910 6.3e-16 90.9 60 78.3
GSVIVG01030691001 Vitis vinifera HOM05D005365 ORTHO05D006910 7.7e-14 84.0 70 58.6
Cfa023924 Carpinus fangiana HOM05D005365 ORTHO05D006910 1.3e-13 83.2 241 29.0
TPR.G7041 Trifolium pratense HOM05D005365 ORTHO05D006910 1.9e-12 79.3 51 74.5
Psat7g195800 Pisum sativum HOM05D005365 ORTHO05D006910 2.5e-12 79.0 77 58.4
SEGI_04861 Sequoiadendron giganteum HOM05D005365 ORTHO05D006910 1.0e-10 73.6 61 60.7
Gohir.D09G013833 Gossypium hirsutum HOM05D005365 ORTHO05D015145 6.8e-10 70.9 45 80.0
SEGI_36380 Sequoiadendron giganteum HOM05D005365 ORTHO05D006910 3.5e-06 58.5 50 54.0
SEGI_22187 Sequoiadendron giganteum HOM05D005365 ORTHO05D000227 5.9e-06 57.8 44 59.1


User provided reference genes

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