Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp7g04020 Schrenkiella parvula HOM05D007646 ORTHO05D004022 6.5e-78 293.9 138 100.0
BcaB02g08021 Brassica carinata HOM05D007646 ORTHO05D004022 3.8e-62 241.5 140 82.1
Thhalv10027987m.g Eutrema salsugineum HOM05D007646 ORTHO05D004022 5.7e-58 227.6 138 79.7
BolC6t36994H Brassica oleracea HOM05D007646 ORTHO05D004022 7.0e-56 220.7 130 80.0
CARHR214680 Cardamine hirsuta HOM05D007646 ORTHO05D004022 7.0e-56 220.7 138 76.8
BcaC08g44354 Brassica carinata HOM05D007646 ORTHO05D004022 9.1e-56 220.3 130 80.0
Carub.0005s1235 Capsella rubella HOM05D007646 ORTHO05D004022 2.0e-55 219.2 139 79.1
BraA07t29660Z Brassica rapa HOM05D007646 ORTHO05D004022 2.6e-55 218.8 131 79.4
AL7G52880 Arabidopsis lyrata HOM05D007646 ORTHO05D004022 1.0e-54 216.9 139 77.0
AT5G38060 Arabidopsis thaliana HOM05D007646 ORTHO05D004022 9.4e-53 210.3 140 76.4
Aa31LG9G17280 Aethionema arabicum HOM05D004323 ORTHO05D004022 1.2e-52 209.9 137 74.5
A07p19560 Brassica napus HOM05D007646 ORTHO05D004022 4.7e-52 208.0 154 68.2
C06p17970 Brassica napus HOM05D007646 ORTHO05D004022 3.0e-51 205.3 158 65.8
THA.LOC104822453 Tarenaya hassleriana HOM05D007646 ORTHO05D004022 6.5e-46 187.6 139 70.5
Ciclev10013088m.g Citrus clementina HOM05D007646 ORTHO05D004022 1.5e-45 186.4 134 65.7
Haze_14207 Corylus avellana HOM05D007646 ORTHO05D004022 4.0e-43 178.3 97 82.5
CiPaw.03G067200 Carya illinoinensis HOM05D007646 ORTHO05D004022 6.8e-43 177.6 93 83.9
Cpa.g.sc116.10 Carica papaya HOM05D007646 ORTHO05D004022 1.5e-42 176.4 141 63.8
Eucgr.F02813 Eucalyptus grandis HOM05D007646 ORTHO05D004022 1.5e-42 176.4 94 83.0
Manes.02G073800 Manihot esculenta HOM05D007646 ORTHO05D004022 4.4e-42 174.9 94 83.0
Potri.017G122500 Populus trichocarpa HOM05D007646 ORTHO05D004022 4.4e-42 174.9 113 69.9
Manes.01G114800 Manihot esculenta HOM05D007646 ORTHO05D004022 9.8e-42 173.7 94 81.9
Psat3g096480 Pisum sativum HOM05D007646 ORTHO05D004022 9.8e-42 173.7 110 73.6
GSVIVG01030896001 Vitis vinifera HOM05D007646 ORTHO05D004022 1.7e-41 172.9 112 70.5
ClCG05G010760 Citrullus lanatus HOM05D007646 ORTHO05D004022 4.8e-41 171.4 120 69.2
HPP92_011530 Vanilla planifolia HOM05D007646 ORTHO05D004022 4.8e-41 171.4 117 68.4
Cc07_g08290 Coffea canephora HOM05D007646 ORTHO05D004022 6.3e-41 171.0 93 81.7
FvH4_4g24890 Fragaria vesca HOM05D007646 ORTHO05D004022 6.3e-41 171.0 108 73.1
FAN12G1679 Fragaria x ananassa HOM05D007646 ORTHO05D004022 6.3e-41 171.0 108 73.1
Atru.chr1.1768 Acer truncatum HOM05D007646 ORTHO05D004022 1.1e-40 170.2 136 65.4
FAN07G2610 Fragaria x ananassa HOM05D007646 ORTHO05D004022 1.8e-40 169.5 106 73.6
FAN17G0138 Fragaria x ananassa HOM05D007646 ORTHO05D004022 1.8e-40 169.5 106 73.6
Duzib133G1094 Durio zibethinus HOM05D007646 ORTHO05D004022 3.1e-40 168.7 128 63.3
Gohir.D07G080400 Gossypium hirsutum HOM05D007646 ORTHO05D004022 3.1e-40 168.7 135 62.2
Gorai.001G085500 Gossypium raimondii HOM05D007646 ORTHO05D004022 3.1e-40 168.7 135 62.2
HanXRQChr12g0375971 Helianthus annuus HOM05D007646 ORTHO05D004022 5.4e-40 167.9 121 66.1
Lsat_1_v5_gn_3_83021 Lactuca sativa HOM05D007646 ORTHO05D004022 7.0e-40 167.5 110 70.0
Lj1g0016280 Lotus japonicus HOM05D007646 ORTHO05D004022 7.0e-40 167.5 117 68.4
Prupe.3G151500 Prunus persica HOM05D007646 ORTHO05D004022 9.1e-40 167.2 123 64.2
TAR629G1988 Trochodendron aralioides HOM05D007646 ORTHO05D004022 1.2e-39 166.8 122 65.6
Glyma.02G091100 Glycine max HOM05D007646 ORTHO05D004022 1.6e-39 166.4 95 77.9
Sopen02g014370 Solanum pennellii HOM05D007646 ORTHO05D004022 1.6e-39 166.4 127 62.2
TPR.G28547 Trifolium pratense HOM05D007646 ORTHO05D004022 1.6e-39 166.4 97 78.4
Gohir.A07G075950 Gossypium hirsutum HOM05D007646 ORTHO05D004022 2.0e-39 166.0 135 60.7
vmacro05494 Vaccinium macrocarpon HOM05D007646 ORTHO05D004022 2.7e-39 165.6 97 75.3
Hma1.2p1_0283F.1_g113630 Hydrangea macrophylla HOM05D007646 ORTHO05D004022 3.5e-39 165.2 92 79.3
RcHm_v2.0_Chr3g0493581 Rosa chinensis HOM05D007646 ORTHO05D004022 3.5e-39 165.2 107 72.9
Solyc02g063300.3 Solanum lycopersicum HOM05D007646 ORTHO05D004022 3.5e-39 165.2 101 72.3
EL10Ac2g04503 Beta vulgaris HOM05D007646 ORTHO05D004022 4.5e-39 164.9 134 60.4
PGSC0003DMG400010412 Solanum tuberosum HOM05D007646 ORTHO05D004022 5.9e-39 164.5 137 60.6
TWI77G0633 Tripterygium wilfordii HOM05D007646 ORTHO05D004022 5.9e-39 164.5 121 66.1
arahy.Tifrunner.gnm1.ann1.27TPXA Arachis hypogaea HOM05D007646 ORTHO05D004022 1.0e-38 163.7 91 78.0
arahy.Tifrunner.gnm1.ann1.FGX6FG Arachis hypogaea HOM05D007646 ORTHO05D004022 1.0e-38 163.7 91 78.0
Rhsim10G0078400 Rhododendron simsii HOM05D007646 ORTHO05D004022 1.0e-38 163.7 145 59.3
Thecc.04G124000 Theobroma cacao HOM05D007646 ORTHO05D004022 1.0e-38 163.7 135 60.0
VMungo1383G0770 Vigna mungo HOM05D007646 ORTHO05D004022 1.0e-38 163.7 114 66.7
Sc11g0008560 Simmondsia chinensis HOM05D007646 ORTHO05D004022 1.3e-38 163.3 101 73.3
Cfa007863 Carpinus fangiana HOM05D007646 ORTHO05D004022 1.7e-38 162.9 159 55.3
Os08g0364500 Oryza sativa ssp. japonica HOM05D007646 ORTHO05D004022 1.7e-38 162.9 106 70.8
Phvul.008G009900 Phaseolus vulgaris HOM05D007646 ORTHO05D004022 1.7e-38 162.9 95 75.8
QL07p035402 Quercus lobata HOM05D007646 ORTHO05D004022 1.7e-38 162.9 102 69.6
Hund13692 Selenicereus undatus HOM05D007646 ORTHO05D004022 3.8e-38 161.8 123 63.4
MSTRG.3534 Avicennia marina HOM05D007646 ORTHO05D004022 5.0e-38 161.4 103 68.9
Zm00001eb042800 Zea mays HOM05D007646 ORTHO05D004022 6.5e-38 161.0 113 68.1
Sed0004781 Sechium edule HOM05D007646 ORTHO05D004022 8.5e-38 160.6 131 60.3
Migut.L00480 Erythranthe guttata HOM05D007646 ORTHO05D004022 1.1e-37 160.2 123 62.6
Lalb_Chr10g0091581 Lupinus albus HOM05D007646 ORTHO05D004022 1.5e-37 159.8 130 62.3
Aqoxy3G00145 Aquilegia oxysepala HOM05D007646 ORTHO05D004022 2.5e-37 159.1 134 57.5
PSO017G6311 Papaver somniferum HOM05D007646 ORTHO05D004022 7.2e-37 157.5 94 75.5
SGA_v2.0_scaffold329G48872 Striga asiatica HOM05D007646 ORTHO05D004022 7.2e-37 157.5 109 67.9
ATR0326G025 Amborella trichopoda HOM05D007646 ORTHO05D004022 9.4e-37 157.1 129 59.7
PSO478G0345 Papaver somniferum HOM05D007646 ORTHO05D004022 9.4e-37 157.1 79 84.8
CDE06G1656 Ceratophyllum demersum HOM05D007646 ORTHO05D004022 1.6e-36 156.4 107 68.2
CANSAT54G0187 Cannabis sativa HOM05D007646 ORTHO05D004022 2.1e-36 156.0 82 82.9
SEGI_34374 Sequoiadendron giganteum HOM05D007646 ORTHO05D004022 6.1e-36 154.5 91 70.3
Pp3c20_8520 Physcomitrium patens HOM05D007646 ORTHO05D004022 3.0e-35 152.1 81 77.8
COL.COLO4_27123 Corchorus olitorius HOM05D003498 ORTHO05D004191 5.7e-34 147.9 72 86.1
DCAR_010731 Daucus carota HOM05D007646 ORTHO05D004022 2.8e-33 145.6 146 54.8
Mapoly0026s0130 Marchantia polymorpha HOM05D007646 ORTHO05D004022 1.1e-32 143.7 90 66.7
Nitab4.5_0000036g0620 Nicotiana tabacum HOM05D007646 ORTHO05D004022 3.1e-32 142.1 111 61.3
SMO270G0036 Selaginella moellendorffii HOM05D007646 ORTHO05D004022 5.4e-32 141.4 81 72.8
AagrBONN_evm.TU.Sc2ySwM_117.3189 Anthoceros agrestis HOM05D007646 ORTHO05D004022 1.2e-31 140.2 110 57.3
Sabra17G0101300 Salix brachista HOM05D007646 ORTHO05D004022 2.9e-30 135.6 200 39.5
Sabra17G0103900 Salix brachista HOM05D007646 ORTHO05D004022 3.8e-30 135.2 201 39.3
Medtr7g082970 Medicago truncatula HOM05D007646 ORTHO05D004022 1.5e-29 133.3 210 39.5
CBR_g4014 Chara braunii HOM05D007646 ORTHO05D004022 2.8e-28 129.0 90 61.1
Ah.16g101400 Amaranthus hybridus HOM05D007646 ORTHO05D004022 2.3e-22 109.4 55 80.0
CsaV3_3G017630 Cucumis sativus L. HOM05D007646 ORTHO05D004022 8.6e-22 107.5 51 88.2
MBI10_g07293_MAGBIO Magnolia biondii HOM05D007646 ORTHO05D004022 5.6e-21 104.8 52 84.6
CSS0015077 Camellia sinensis var. sinensis HOM05D007646 ORTHO05D004022 9.5e-21 104.0 51 86.3
Peaxi162Scf00343g00059 Petunia axillaris HOM05D007646 ORTHO05D004022 4.7e-20 101.7 51 82.4
Nn4g24089 Nelumbo nucifera HOM05D007646 ORTHO05D004022 2.0e-18 96.3 93 55.9
MELO3C020311.2 Cucumis melo HOM05D007646 ORTHO05D004022 6.6e-14 81.3 88 53.4
Nn3g18065 Nelumbo nucifera HOM05D007646 ORTHO05D004022 1.4e-11 73.6 75 50.7
Eucgr.A02986 Eucalyptus grandis HOM05D007710 ORTHO05D004022 6.8e-11 71.2 79 41.8
unitig_748.g8495 Utricularia gibba HOM05D007646 ORTHO05D004022 6.8e-11 71.2 49 71.4
Pp3c5_4790 Physcomitrium patens HOM05D007710 ORTHO05D004022 2.6e-10 69.3 86 37.2
ECA246G1632 Erigeron canadensis HOM05D007646 ORTHO05D004022 4.4e-10 68.6 34 76.5
Actinidia08760 Actinidia chinensis HOM05D007710 ORTHO05D004022 9.8e-10 67.4 80 40.0
Lsat_1_v5_gn_2_60801 Lactuca sativa HOM05D007710 ORTHO05D004022 1.3e-09 67.0 77 41.6
ECA233G0318 Erigeron canadensis HOM05D007710 ORTHO05D004022 3.7e-09 65.5 85 37.6
Prupe.2G328300 Prunus persica HOM05D007710 ORTHO05D004022 3.7e-09 65.5 79 39.2
Nitab4.5_0000021g0800 Nicotiana tabacum HOM05D007710 ORTHO05D004022 4.9e-09 65.1 79 39.2
Cc02_g00160 Coffea canephora HOM05D007710 ORTHO05D004022 1.1e-08 63.9 79 36.7
Nitab4.5_0004530g0090 Nicotiana tabacum HOM05D007710 ORTHO05D004022 1.1e-08 63.9 79 38.0
DCAR_009023 Daucus carota HOM05D007710 ORTHO05D004022 1.4e-08 63.5 79 39.2
Glyma.12G016700 Glycine max HOM05D007710 ORTHO05D004022 1.4e-08 63.5 79 38.0
TAR375G0377 Trochodendron aralioides HOM05D007710 ORTHO05D004022 1.4e-08 63.5 80 38.8
CSS0005120 Camellia sinensis var. sinensis HOM05D007710 ORTHO05D004022 1.9e-08 63.2 79 38.0
CSS0038916 Camellia sinensis var. sinensis HOM05D007710 ORTHO05D004022 1.9e-08 63.2 79 38.0
CiPaw.06G035400 Carya illinoinensis HOM05D007710 ORTHO05D004022 1.9e-08 63.2 79 38.0
Haze_00383 Corylus avellana HOM05D007710 ORTHO05D004022 2.4e-08 62.8 86 36.0
arahy.Tifrunner.gnm1.ann1.GY8AT6 Arachis hypogaea HOM05D007710 ORTHO05D004022 3.2e-08 62.4 79 38.0
arahy.Tifrunner.gnm1.ann1.U0IDC3 Arachis hypogaea HOM05D007710 ORTHO05D004022 3.2e-08 62.4 79 38.0
Cfa016067 Carpinus fangiana HOM05D003442 ORTHO05D004005 3.2e-08 62.4 118 31.4
Phvul.011G019000 Phaseolus vulgaris HOM05D007710 ORTHO05D004022 4.1e-08 62.0 79 38.0
PGR042G1372 Punica granatum HOM05D007710 ORTHO05D004022 4.1e-08 62.0 79 36.7
GSVIVG01024345001 Vitis vinifera HOM05D007710 ORTHO05D004022 4.1e-08 62.0 91 34.1
Aqoxy3G02299 Aquilegia oxysepala HOM05D007710 ORTHO05D004022 5.4e-08 61.6 80 36.2
Hma1.2p1_0649F.1_g195220 Hydrangea macrophylla HOM05D007710 ORTHO05D004022 5.4e-08 61.6 77 39.0
Lj3g0011322 Lotus japonicus HOM05D007710 ORTHO05D004022 5.4e-08 61.6 79 38.0
SMO347G0449 Selaginella moellendorffii HOM05D007710 ORTHO05D004022 5.4e-08 61.6 85 38.8
CAN.G1131.30 Capsicum annuum HOM05D007710 ORTHO05D004022 7.1e-08 61.2 89 36.0
AUR62028202 Chenopodium quinoa HOM05D007710 ORTHO05D004022 7.1e-08 61.2 79 36.7
RcHm_v2.0_Chr1g0384511 Rosa chinensis HOM05D007710 ORTHO05D004022 1.2e-07 60.5 79 36.7
PGSC0003DMG400003164 Solanum tuberosum HOM05D007710 ORTHO05D004022 1.2e-07 60.5 79 36.7
PGSC0003DMG402026486 Solanum tuberosum HOM05D007710 ORTHO05D004022 1.2e-07 60.5 79 36.7
ATR0057G097 Amborella trichopoda HOM05D007710 ORTHO05D004022 1.6e-07 60.1 83 37.3
FvH4_7g34150 Fragaria vesca HOM05D007710 ORTHO05D004022 1.6e-07 60.1 89 32.6
Potri.013G078866 Populus trichocarpa HOM05D007710 ORTHO05D004022 1.6e-07 60.1 80 40.0
TPR.G19627 Trifolium pratense HOM05D007710 ORTHO05D004022 1.6e-07 60.1 87 34.5
EL10Ac3g05053 Beta vulgaris HOM05D007710 ORTHO05D004022 2.1e-07 59.7 82 35.4
TWI32G0404 Tripterygium wilfordii HOM05D007710 ORTHO05D004022 2.1e-07 59.7 79 36.7
HanXRQChr04g0105361 Helianthus annuus HOM05D007710 ORTHO05D004022 2.7e-07 59.3 77 39.0
BcaB03g15335 Brassica carinata HOM05D007710 ORTHO05D004022 3.5e-07 58.9 80 35.0
FAN03G2015 Fragaria x ananassa HOM05D007710 ORTHO05D004022 3.5e-07 58.9 89 32.6
PSO063G4155 Papaver somniferum HOM05D007710 ORTHO05D004022 3.5e-07 58.9 80 37.5
Hund09805 Selenicereus undatus HOM05D007710 ORTHO05D004022 3.5e-07 58.9 79 36.7
Solyc03g097200.3 Solanum lycopersicum HOM05D007710 ORTHO05D004022 3.5e-07 58.9 79 35.4
Sopen03g027960 Solanum pennellii HOM05D007710 ORTHO05D004022 3.5e-07 58.9 79 35.4
Medtr4g478210 Medicago truncatula HOM05D007710 ORTHO05D004022 4.6e-07 58.5 96 34.4
PSO782G0287 Papaver somniferum HOM05D007710 ORTHO05D004022 4.6e-07 58.5 80 36.2
unitig_747.g21335 Utricularia gibba HOM05D007710 ORTHO05D004022 4.6e-07 58.5 79 36.7
BraA07t30900Z Brassica rapa HOM05D007710 ORTHO05D004022 6.0e-07 58.2 80 35.0
Nn6g33555 Nelumbo nucifera HOM05D007710 ORTHO05D004022 6.0e-07 58.2 80 35.0
A07p32740 Brassica napus HOM05D007710 ORTHO05D004022 7.8e-07 57.8 80 35.0
Peaxi162Scf00516g00641 Petunia axillaris HOM05D007710 ORTHO05D004022 7.8e-07 57.8 79 35.4
Sp5g19360 Schrenkiella parvula HOM05D007710 ORTHO05D004022 7.8e-07 57.8 80 35.0
Duzib128G0150 Durio zibethinus HOM05D007710 ORTHO05D004022 1.7e-06 56.6 81 35.8
MD01G1238400 Malus domestica HOM05D007710 ORTHO05D004022 1.7e-06 56.6 79 36.7
Mapoly0120s0048 Marchantia polymorpha HOM05D007710 ORTHO05D004022 1.7e-06 56.6 79 35.4
BolC6t38987H Brassica oleracea HOM05D007710 ORTHO05D004022 2.3e-06 56.2 86 36.0
Cre13.g605700 Chlamydomonas reinhardtii HOM05D007646 ORTHO05D004022 2.3e-06 56.2 87 34.5
MD01G1238100 Malus domestica HOM05D007710 ORTHO05D004022 2.3e-06 56.2 79 35.4
Manes.08G064400 Manihot esculenta HOM05D007710 ORTHO05D004022 2.3e-06 56.2 80 37.5
AT1G65000 Arabidopsis thaliana HOM05D007710 ORTHO05D004022 3.0e-06 55.8 80 33.8
Aa31LG2G2200 Aethionema arabicum HOM05D007710 ORTHO05D004022 5.1e-06 55.1 97 27.8
Psat7g170120 Pisum sativum HOM05D007710 ORTHO05D004022 5.1e-06 55.1 82 32.9
THA.LOC104805715 Tarenaya hassleriana HOM05D007710 ORTHO05D004022 6.6e-06 54.7 79 32.9
CARHR057330 Cardamine hirsuta HOM05D007710 ORTHO05D004022 8.6e-06 54.3 79 32.9
FAN10G2135 Fragaria x ananassa HOM05D003442 ORTHO05D004005 8.6e-06 54.3 89 31.5
Gohir.A13G101700 Gossypium hirsutum HOM05D007710 ORTHO05D004022 8.6e-06 54.3 81 34.6


User provided reference genes

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