Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp7g03260 Schrenkiella parvula HOM05D003749 ORTHO05D004421 3.0e-66 255.0 124 100.0
Thhalv10027984m.g Eutrema salsugineum HOM05D003749 ORTHO05D004421 5.7e-57 224.2 142 80.3
Carub.0007s3721 Capsella rubella HOM05D003749 ORTHO05D004421 1.8e-55 219.2 142 78.9
CARHR214090 Cardamine hirsuta HOM05D003749 ORTHO05D004421 3.4e-54 214.9 142 76.8
AT5G38650 Arabidopsis thaliana HOM05D003749 ORTHO05D004421 7.6e-54 213.8 142 77.5
AT5G38660 Arabidopsis thaliana HOM05D006042 ORTHO05D007658 7.6e-54 213.8 142 77.5
Aa31LG2G3620 Aethionema arabicum HOM05D003749 ORTHO05D004421 2.2e-53 212.2 142 75.4
CARHR059720 Cardamine hirsuta HOM05D003749 ORTHO05D004421 1.1e-52 209.9 142 73.9
THA.LOC104823870 Tarenaya hassleriana HOM05D003749 ORTHO05D004421 4.2e-52 208.0 142 74.6
Sp5g22180 Schrenkiella parvula HOM05D003749 ORTHO05D004421 5.5e-52 207.6 142 73.9
THA.LOC104805552 Tarenaya hassleriana HOM05D003749 ORTHO05D004421 1.2e-51 206.5 142 73.9
BcaB03g15341 Brassica carinata HOM05D003749 ORTHO05D004421 3.5e-51 204.9 142 71.8
Thhalv10019303m.g Eutrema salsugineum HOM05D003749 ORTHO05D004421 3.5e-51 204.9 142 74.6
BcaC03g14820 Brassica carinata HOM05D003749 ORTHO05D004421 1.0e-50 203.4 142 71.8
A02p14100 Brassica napus HOM05D003749 ORTHO05D004421 1.0e-50 203.4 142 71.8
BolC2t08424H Brassica oleracea HOM05D003749 ORTHO05D004421 1.0e-50 203.4 142 71.8
Carub.0002s1352 Capsella rubella HOM05D003749 ORTHO05D004421 1.8e-50 202.6 142 71.8
AT1G67250 Arabidopsis thaliana HOM05D003749 ORTHO05D004421 5.1e-50 201.1 142 71.8
C02p22710 Brassica napus HOM05D003749 ORTHO05D004421 5.1e-50 201.1 142 71.1
BraA02t06473Z Brassica rapa HOM05D003749 ORTHO05D004421 5.1e-50 201.1 142 71.1
BcaB05g24251 Brassica carinata HOM05D003749 ORTHO05D004421 6.7e-50 200.7 142 71.1
A07p32660 Brassica napus HOM05D003749 ORTHO05D004421 1.1e-49 199.9 142 71.1
C06p38830 Brassica napus HOM05D003749 ORTHO05D004421 1.1e-49 199.9 142 71.1
BolC6t38976H Brassica oleracea HOM05D003749 ORTHO05D004421 1.1e-49 199.9 142 71.1
BraA07t30890Z Brassica rapa HOM05D003749 ORTHO05D004421 1.1e-49 199.9 142 71.1
BcaB03g15214 Brassica carinata HOM05D003749 ORTHO05D004421 5.7e-49 197.6 142 70.4
A07p33850 Brassica napus HOM05D003749 ORTHO05D004421 9.7e-49 196.8 142 69.7
BolC6t39133H Brassica oleracea HOM05D003749 ORTHO05D004421 9.7e-49 196.8 142 69.7
BraA07t31011Z Brassica rapa HOM05D003749 ORTHO05D004421 9.7e-49 196.8 142 69.7
CiPaw.03G059000 Carya illinoinensis HOM05D003749 ORTHO05D004421 9.7e-49 196.8 142 66.2
CiPaw.04G040000 Carya illinoinensis HOM05D003749 ORTHO05D004421 2.8e-48 195.3 142 66.9
BcaC08g46151 Brassica carinata HOM05D003749 ORTHO05D004421 4.8e-48 194.5 142 69.0
C06p43020 Brassica napus HOM05D003749 ORTHO05D004421 4.8e-48 194.5 142 69.0
Cpa.g.sc179.30 Carica papaya HOM05D003749 ORTHO05D004421 4.8e-48 194.5 142 66.9
Sed0006006 Sechium edule HOM05D003749 ORTHO05D004421 4.8e-48 194.5 142 66.2
PGR042G1179 Punica granatum HOM05D003749 ORTHO05D004421 1.4e-47 193.0 142 66.9
Manes.02G066100 Manihot esculenta HOM05D003749 ORTHO05D004421 2.4e-47 192.2 142 66.2
Sopen02g034510 Solanum pennellii HOM05D003749 ORTHO05D004421 2.4e-47 192.2 142 66.2
CsaV3_5G039100 Cucumis sativus L. HOM05D003749 ORTHO05D004421 5.3e-47 191.0 142 66.2
Peaxi162Scf00479g00114 Petunia axillaris HOM05D003749 ORTHO05D004421 5.3e-47 191.0 142 65.5
PGSC0003DMG400010046 Solanum tuberosum HOM05D003749 ORTHO05D004421 5.3e-47 191.0 142 65.5
Atru.chr2.1608 Acer truncatum HOM05D003749 ORTHO05D004421 6.9e-47 190.7 140 67.1
Gorai.004G054900 Gossypium raimondii HOM05D003749 ORTHO05D004421 6.9e-47 190.7 142 67.6
Manes.01G107800 Manihot esculenta HOM05D003749 ORTHO05D004421 6.9e-47 190.7 142 65.5
QL02p052938 Quercus lobata HOM05D003749 ORTHO05D004421 6.9e-47 190.7 141 66.0
Solyc02g089820.4 Solanum lycopersicum HOM05D003749 ORTHO05D004421 6.9e-47 190.7 142 66.2
ClCG11G005320 Citrullus lanatus HOM05D003749 ORTHO05D004421 1.5e-46 189.5 142 64.8
MELO3C022086.2 Cucumis melo HOM05D003749 ORTHO05D004421 1.5e-46 189.5 142 64.8
Gohir.D08G054500 Gossypium hirsutum HOM05D003749 ORTHO05D004421 2.0e-46 189.1 142 66.9
Peaxi162Scf01056g00243 Petunia axillaris HOM05D003749 ORTHO05D004421 2.0e-46 189.1 142 64.1
Nitab4.5_0009272g0030 Nicotiana tabacum HOM05D003749 ORTHO05D004421 2.6e-46 188.7 142 66.2
Atru.chr8.949 Acer truncatum HOM05D003749 ORTHO05D004421 3.4e-46 188.3 142 65.5
Cfa007953 Carpinus fangiana HOM05D003749 ORTHO05D004421 3.4e-46 188.3 142 64.8
Gohir.A08G044800 Gossypium hirsutum HOM05D003749 ORTHO05D004421 4.5e-46 188.0 142 66.9
CAN.G497.5 Capsicum annuum HOM05D003749 ORTHO05D004421 5.9e-46 187.6 142 63.4
CANSAT64G0170 Cannabis sativa HOM05D003749 ORTHO05D004421 7.7e-46 187.2 142 65.5
TAR629G3198 Trochodendron aralioides HOM05D003749 ORTHO05D004421 7.7e-46 187.2 142 65.5
Dinv33926 Davidia involucrata HOM05D003749 ORTHO05D004421 1.0e-45 186.8 142 63.4
Thecc.04G138900 Theobroma cacao HOM05D003749 ORTHO05D004421 1.0e-45 186.8 142 66.2
AL2G25760 Arabidopsis lyrata HOM05D003749 ORTHO05D004421 1.3e-45 186.4 191 54.5
Prupe.3G240300 Prunus persica HOM05D003749 ORTHO05D004421 1.7e-45 186.0 142 66.2
GSVIVG01036450001 Vitis vinifera HOM05D003749 ORTHO05D004421 2.9e-45 185.3 142 65.5
Hund15121 Selenicereus undatus HOM05D003749 ORTHO05D004421 3.8e-45 184.9 141 63.1
Duzib138G1497 Durio zibethinus HOM05D003749 ORTHO05D004421 1.4e-44 183.0 142 64.8
Duzib268G0352 Durio zibethinus HOM05D003749 ORTHO05D004421 1.9e-44 182.6 142 65.5
arahy.Tifrunner.gnm1.ann1.G4J1DJ Arachis hypogaea HOM05D003749 ORTHO05D004421 2.5e-44 182.2 141 66.0
LjContig00222g0005460 Lotus japonicus HOM05D003749 ORTHO05D004421 2.5e-44 182.2 141 66.0
CSS0022784 Camellia sinensis var. sinensis HOM05D003749 ORTHO05D004421 3.2e-44 181.8 138 65.2
Lalb_Chr16g0376641 Lupinus albus HOM05D003749 ORTHO05D004421 5.5e-44 181.0 141 63.8
Nn3g17694 Nelumbo nucifera HOM05D003749 ORTHO05D004421 5.5e-44 181.0 142 63.4
CSS0014522 Camellia sinensis var. sinensis HOM05D003749 ORTHO05D004421 7.2e-44 180.6 138 64.5
MD17G1073500 Malus domestica HOM05D003749 ORTHO05D004421 7.2e-44 180.6 142 62.7
TWI38G0650 Tripterygium wilfordii HOM05D003749 ORTHO05D004421 7.2e-44 180.6 142 63.4
arahy.Tifrunner.gnm1.ann1.M5A7E6 Arachis hypogaea HOM05D003749 ORTHO05D004421 1.2e-43 179.9 139 65.5
CDE01G0232 Ceratophyllum demersum HOM05D003749 ORTHO05D004421 1.2e-43 179.9 142 61.3
Lalb_Chr09g0320331 Lupinus albus HOM05D003749 ORTHO05D004421 1.6e-43 179.5 141 63.8
TWI39G0894 Tripterygium wilfordii HOM05D003749 ORTHO05D004421 2.7e-43 178.7 142 62.7
MD09G1083200 Malus domestica HOM05D003749 ORTHO05D004421 3.6e-43 178.3 142 62.0
CDE02G3838 Ceratophyllum demersum HOM05D003749 ORTHO05D004421 7.9e-43 177.2 142 61.3
Nitab4.5_0003461g0020 Nicotiana tabacum HOM05D003749 ORTHO05D004421 7.9e-43 177.2 142 59.9
TAR374G0647 Trochodendron aralioides HOM05D003749 ORTHO05D004421 7.9e-43 177.2 142 62.0
Nitab4.5_0002108g0070 Nicotiana tabacum HOM05D003749 ORTHO05D004421 1.0e-42 176.8 170 55.3
Hma1.2p1_0550F.1_g177200 Hydrangea macrophylla HOM05D003749 ORTHO05D004421 1.4e-42 176.4 142 60.6
Hma1.2p1_0550F.1_g177205 Hydrangea macrophylla HOM05D003749 ORTHO05D004421 1.4e-42 176.4 142 60.6
Actinidia18121 Actinidia chinensis HOM05D003749 ORTHO05D004421 2.3e-42 175.6 141 61.0
Ca_24455_v3 Cicer arietinum L. HOM05D003749 ORTHO05D004421 2.3e-42 175.6 141 64.5
Nn4g23700 Nelumbo nucifera HOM05D003749 ORTHO05D004421 3.9e-42 174.9 136 62.5
MBI16_g33829_MAGBIO Magnolia biondii HOM05D003749 ORTHO05D004421 1.1e-41 173.3 138 61.6
Sc10g0001340 Simmondsia chinensis HOM05D003749 ORTHO05D004421 2.0e-41 172.6 142 59.2
Ah.02g115680 Amaranthus hybridus HOM05D003749 ORTHO05D004421 3.3e-41 171.8 139 61.9
EL10Ac5g11727 Beta vulgaris HOM05D003749 ORTHO05D004421 4.3e-41 171.4 141 58.9
MBI16_g46925_MAGBIO Magnolia biondii HOM05D003749 ORTHO05D004421 5.7e-41 171.0 135 62.2
FAN14G1502 Fragaria x ananassa HOM05D003749 ORTHO05D004421 7.4e-41 170.6 140 57.9
FAN05G0572 Fragaria x ananassa HOM05D003749 ORTHO05D004421 1.3e-40 169.9 140 57.9
FAN02G1560 Fragaria x ananassa HOM05D003749 ORTHO05D004421 1.7e-40 169.5 140 57.9
HanXRQChr14g0448851 Helianthus annuus HOM05D003749 ORTHO05D004421 1.7e-40 169.5 142 59.2
Medtr5g008020 Medicago truncatula HOM05D003749 ORTHO05D004421 1.7e-40 169.5 123 65.9
RcHm_v2.0_Chr2g0163251 Rosa chinensis HOM05D003749 ORTHO05D004421 1.7e-40 169.5 140 57.1
MSTRG.3390 Avicennia marina HOM05D003749 ORTHO05D004421 2.2e-40 169.1 142 61.3
Ca_04934_v3 Cicer arietinum L. HOM05D003749 ORTHO05D004421 2.2e-40 169.1 141 61.7
COL.COLO4_16198 Corchorus olitorius HOM05D003749 ORTHO05D004421 8.2e-40 167.2 142 61.3
AUR62042069 Chenopodium quinoa HOM05D003749 ORTHO05D004421 5.3e-39 164.5 141 58.9
AUR62044332 Chenopodium quinoa HOM05D003749 ORTHO05D004421 5.3e-39 164.5 141 58.9
AUR62040335 Chenopodium quinoa HOM05D003749 ORTHO05D004421 6.9e-39 164.1 141 58.9
MBI10_g08551_MAGBIO Magnolia biondii HOM05D003749 ORTHO05D004421 6.9e-39 164.1 138 57.2
Ciclev10013059m.g Citrus clementina HOM05D003749 ORTHO05D004421 1.2e-38 163.3 142 55.6
Haze_14116 Corylus avellana HOM05D003749 ORTHO05D004421 1.2e-38 163.3 193 48.2
Haze_14122 Corylus avellana HOM05D003749 ORTHO05D004421 1.2e-38 163.3 193 48.2
ECA238G2303 Erigeron canadensis HOM05D003749 ORTHO05D004421 2.0e-38 162.5 138 58.7
Glyma.11G093000 Glycine max HOM05D003749 ORTHO05D004421 2.0e-38 162.5 138 60.1
Rhsim10G0064100 Rhododendron simsii HOM05D003749 ORTHO05D004421 2.6e-38 162.2 154 53.2
unitig_32.g10762 Utricularia gibba HOM05D003749 ORTHO05D004421 2.6e-38 162.2 142 60.6
FvH4_6g45420 Fragaria vesca HOM05D003749 ORTHO05D004421 3.4e-38 161.8 135 57.0
Glyma.12G019300 Glycine max HOM05D003749 ORTHO05D004421 3.4e-38 161.8 138 60.1
Lj3g0004703 Lotus japonicus HOM05D003749 ORTHO05D004421 3.4e-38 161.8 141 60.3
PSO063G3423 Papaver somniferum HOM05D003749 ORTHO05D004421 3.4e-38 161.8 142 58.5
SalBow1G5732 Salvia bowleyana HOM05D003749 ORTHO05D004421 3.4e-38 161.8 142 57.7
Migut.K00859 Erythranthe guttata HOM05D003749 ORTHO05D004421 4.5e-38 161.4 142 57.7
PSO782G4209 Papaver somniferum HOM05D003749 ORTHO05D004421 5.9e-38 161.0 142 58.5
unitig_748.g8406 Utricularia gibba HOM05D003749 ORTHO05D004421 7.7e-38 160.6 142 59.2
HanXRQChr12g0385611 Helianthus annuus HOM05D003749 ORTHO05D004421 1.3e-37 159.8 143 56.6
Lsat_1_v5_gn_2_90800 Lactuca sativa HOM05D003749 ORTHO05D004421 8.5e-37 157.1 138 56.5
Migut.H00529 Erythranthe guttata HOM05D003749 ORTHO05D004421 1.1e-36 156.8 142 55.6
SalBow6G0369 Salvia bowleyana HOM05D003749 ORTHO05D004421 1.1e-36 156.8 142 56.3
Lalb_Chr19g0139861 Lupinus albus HOM05D003749 ORTHO05D004421 1.4e-36 156.4 141 58.2
TPR.G29477 Trifolium pratense HOM05D003749 ORTHO05D004421 1.4e-36 156.4 141 57.4
SEGI_14095 Sequoiadendron giganteum HOM05D003749 ORTHO05D004421 2.5e-36 155.6 138 55.8
Medtr4g077240 Medicago truncatula HOM05D003749 ORTHO05D004421 5.5e-36 154.5 141 58.2
Aqoxy3G03894 Aquilegia oxysepala HOM05D003749 ORTHO05D004421 1.2e-35 153.3 140 57.1
Phvul.011G021700 Phaseolus vulgaris HOM05D003749 ORTHO05D004421 1.6e-35 152.9 138 57.2
VMungo1127G1849 Vigna mungo HOM05D003749 ORTHO05D004421 2.7e-35 152.1 135 56.3
SEGI_36613 Sequoiadendron giganteum HOM05D003749 ORTHO05D004421 3.6e-35 151.8 135 55.6
Potri.017G111900 Populus trichocarpa HOM05D003749 ORTHO05D004421 4.7e-35 151.4 142 56.3
SGA_v2.0_scaffold62G21545 Striga asiatica HOM05D003749 ORTHO05D004421 4.7e-35 151.4 157 53.5
TWI38G0800 Tripterygium wilfordii HOM05D003749 ORTHO05D004421 1.0e-34 150.2 142 56.3
ATR0053G008 Amborella trichopoda HOM05D003749 ORTHO05D004421 1.4e-34 149.8 137 57.7
Potri.006G249600 Populus trichocarpa HOM05D003749 ORTHO05D004421 3.0e-34 148.7 142 55.6
Atru.chr2.1922 Acer truncatum HOM05D003749 ORTHO05D004421 9.7e-33 143.7 117 62.4
Cc07_g05070 Coffea canephora HOM05D003749 ORTHO05D004421 9.7e-33 143.7 140 54.3
Dinv34854 Davidia involucrata HOM05D003749 ORTHO05D004421 6.3e-32 141.0 88 73.9
HPP92_000270 Vanilla planifolia HOM05D003749 ORTHO05D004421 4.1e-31 138.3 138 52.2
Psat7g171120 Pisum sativum HOM05D003749 ORTHO05D004421 5.9e-30 134.4 143 53.8
Nitab4.5_0004487g0040 Nicotiana tabacum HOM05D003749 ORTHO05D004421 1.3e-29 133.3 175 42.9
Oeu027946.1 Olea europaea HOM05D003749 ORTHO05D004421 5.2e-26 121.3 80 70.0
Oeu049326.1 Olea europaea HOM05D003749 ORTHO05D004421 2.0e-25 119.4 80 70.0
Mapoly0073s0035 Marchantia polymorpha HOM05D003749 ORTHO05D004421 1.3e-24 116.7 142 45.8
AagrBONN_evm.TU.Sc2ySwM_344.3948 Anthoceros agrestis HOM05D003749 ORTHO05D004421 4.8e-24 114.8 140 42.9
CSS0049372 Camellia sinensis var. sinensis HOM05D003749 ORTHO05D004421 3.1e-23 112.1 138 46.4
Zm00001eb258090 Zea mays HOM05D003749 ORTHO05D004421 5.3e-23 111.3 126 48.4
vmacro05576 Vaccinium macrocarpon HOM05D003749 ORTHO05D004421 7.0e-23 110.9 285 29.1
Os02g0800100 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 2.7e-22 109.0 141 44.0
Pp3c23_15440 Physcomitrium patens HOM05D003749 ORTHO05D004421 5.9e-22 107.8 137 42.3
Pp3c20_8310 Physcomitrium patens HOM05D003749 ORTHO05D004421 1.3e-21 106.7 137 41.6
Os03g0583700 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 2.7e-19 99.0 129 41.9
Os09g0314900 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 3.6e-19 98.6 129 41.9
CBR_g34012 Chara braunii HOM05D003749 ORTHO05D004421 3.0e-18 95.5 125 42.4
SalBow1G0221 Salvia bowleyana HOM05D003749 ORTHO05D004421 1.5e-17 93.2 77 58.4
MSTRG.15417 Avicennia marina HOM05D003749 ORTHO05D004421 7.5e-17 90.9 77 54.5
MD05G1212600 Malus domestica HOM05D003749 ORTHO05D004421 4.8e-16 88.2 68 58.8
SMO119G0338 Selaginella moellendorffii HOM05D003749 ORTHO05D004421 1.2e-14 83.6 127 37.8
MD01G1088800 Malus domestica HOM05D003749 ORTHO05D004421 3.5e-14 82.0 68 55.9
C04p08860 Brassica napus HOM05D003749 ORTHO05D004421 2.1e-11 72.8 88 50.0
Gorai.009G403900 Gossypium raimondii HOM05D003749 ORTHO05D004421 4.7e-11 71.6 42 76.2
Gorai.001G209900 Gossypium raimondii HOM05D003749 ORTHO05D004408 6.1e-11 71.2 43 74.4
Os02g0800500 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 1.4e-10 70.1 89 43.8
Os02g0801200 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 1.4e-10 70.1 89 43.8
Os02g0801300 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 1.4e-10 70.1 89 43.8
BcaC02g12028 Brassica carinata HOM05D003749 ORTHO05D004421 1.8e-10 69.7 88 47.7
Gohir.D08G115050 Gossypium hirsutum HOM05D003749 ORTHO05D004421 1.8e-10 69.7 40 80.0
ATR0693G122 Amborella trichopoda HOM05D003749 ORTHO05D004421 3.0e-10 68.9 73 47.9
CAN.G512.5 Capsicum annuum HOM05D003749 ORTHO05D004421 9.8e-09 63.9 67 49.3
unitig_748.g8606 Utricularia gibba HOM05D000345 ORTHO05D000215 1.3e-08 63.5 87 43.7
BolC1t05893H Brassica oleracea HOM05D003749 ORTHO05D016434 1.7e-08 63.2 91 46.2
Cre16.g665000 Chlamydomonas reinhardtii HOM05D003749 ORTHO05D004421 1.7e-08 63.2 116 32.8
MCO04G514 Micromonas commoda HOM05D003749 ORTHO05D004421 6.3e-08 61.2 121 34.7
Gorai.003G095200 Gossypium raimondii HOM05D003749 ORTHO05D004421 1.1e-07 60.5 34 76.5
DCAR_007518 Daucus carota HOM05D003749 ORTHO05D004421 1.4e-07 60.1 67 49.3
Gohir.D08G113616 Gossypium hirsutum HOM05D003749 ORTHO05D004421 3.1e-07 58.9 36 72.2
Gohir.D12G069201 Gossypium hirsutum HOM05D000140 ORTHO05D008077 7.0e-07 57.8 34 70.6
Gorai.008G075700 Gossypium raimondii HOM05D000140 ORTHO05D008077 1.6e-06 56.6 34 67.6
Sabra11G0068300 Salix brachista HOM05D000487 ORTHO05D004421 1.6e-06 56.6 39 64.1
Sabra16G0120200 Salix brachista HOM05D000487 ORTHO05D004421 1.6e-06 56.6 39 64.1
CARHR257530 Cardamine hirsuta HOM05D000389 ORTHO05D012814 2.7e-06 55.8 39 66.7


User provided reference genes

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