Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp7g03160 Schrenkiella parvula HOM05D004888 ORTHO05D005792 1.3e-100 369.8 193 100.0
Sp2g13710 Schrenkiella parvula HOM05D001195 ORTHO05D001138 1.3e-23 114.0 165 50.3
AT3G20510 Arabidopsis thaliana HOM05D004888 ORTHO05D005792 9.8e-16 87.8 41 100.0
BcaNung06349 Brassica carinata HOM05D004888 ORTHO05D005792 9.8e-16 87.8 41 100.0
CARHR096270 Cardamine hirsuta HOM05D004888 ORTHO05D005792 9.8e-16 87.8 41 100.0
Thhalv10021782m.g Eutrema salsugineum HOM05D004888 ORTHO05D005792 9.8e-16 87.8 41 100.0
Sp3g18510 Schrenkiella parvula HOM05D004888 ORTHO05D005792 9.8e-16 87.8 41 100.0
C07p33260 Brassica napus HOM05D001195 ORTHO05D001138 2.2e-15 86.7 169 41.4
BolC7t43837H Brassica oleracea HOM05D001195 ORTHO05D001138 2.2e-15 86.7 169 41.4
AL3G34290 Arabidopsis lyrata HOM05D004888 ORTHO05D005792 2.9e-15 86.3 41 97.6
AL5G11750 Arabidopsis lyrata HOM05D001195 ORTHO05D001138 2.9e-15 86.3 184 39.7
BcaB04g19111 Brassica carinata HOM05D004888 ORTHO05D005792 2.9e-15 86.3 41 97.6
BcaC01g03552 Brassica carinata HOM05D001160 ORTHO05D001092 3.7e-15 85.9 41 97.6
BolC3t17405H Brassica oleracea HOM05D001160 ORTHO05D001092 3.7e-15 85.9 41 97.6
AT2G02480 Arabidopsis thaliana HOM05D001195 ORTHO05D001138 4.9e-15 85.5 180 40.0
Carub.0003s2047 Capsella rubella HOM05D004888 ORTHO05D005792 4.9e-15 85.5 41 95.1
BcaC06g34050 Brassica carinata HOM05D001195 ORTHO05D001138 1.1e-14 84.3 169 40.8
Carub.0005s0149 Capsella rubella HOM05D001195 ORTHO05D001138 1.4e-14 84.0 189 40.2
A03p41780 Brassica napus HOM05D001160 ORTHO05D005792 1.9e-14 83.6 41 92.7
Aa31LG8G7320 Aethionema arabicum HOM05D004888 ORTHO05D005792 2.4e-14 83.2 41 90.2
A05p28330 Brassica napus HOM05D001160 ORTHO05D001092 4.1e-14 82.4 41 95.1
C05p43820 Brassica napus HOM05D001160 ORTHO05D001092 4.1e-14 82.4 41 95.1
BraA05t21716Z Brassica rapa HOM05D001160 ORTHO05D001092 5.4e-14 82.0 41 92.7
BcaC06g31230 Brassica carinata HOM05D001195 ORTHO05D001138 9.2e-14 81.3 163 41.1
BolC5t33098H Brassica oleracea HOM05D004888 ORTHO05D005792 9.2e-14 81.3 41 92.7
CARHR040840 Cardamine hirsuta HOM05D004888 ORTHO05D005792 4.6e-13 79.0 41 90.2
AL1G58480 Arabidopsis lyrata HOM05D004888 ORTHO05D005792 1.0e-12 77.8 41 87.8
Thhalv10011871m.g Eutrema salsugineum HOM05D004888 ORTHO05D005792 2.3e-12 76.6 41 85.4
AT1G50740 Arabidopsis thaliana HOM05D004888 ORTHO05D005792 3.0e-12 76.3 41 85.4
BcaC08g43255 Brassica carinata HOM05D004888 ORTHO05D005792 6.6e-12 75.1 62 61.3
C06p06010 Brassica napus HOM05D004888 ORTHO05D005792 6.6e-12 75.1 62 61.3
BolC6t35714H Brassica oleracea HOM05D004888 ORTHO05D005792 6.6e-12 75.1 62 61.3
BcaB07g33513 Brassica carinata HOM05D004888 ORTHO05D005792 1.9e-11 73.6 62 59.7
A06p02870 Brassica napus HOM05D004888 ORTHO05D005792 1.9e-11 73.6 62 59.7
BraA06t23494Z Brassica rapa HOM05D004888 ORTHO05D005792 1.9e-11 73.6 62 59.7
MD11G1221000 Malus domestica HOM05D004888 ORTHO05D005792 3.3e-11 72.8 61 60.7
MELO3C030728.2 Cucumis melo HOM05D004888 ORTHO05D005792 4.3e-11 72.4 41 73.2
Duzib170G0778 Durio zibethinus HOM05D004888 ORTHO05D005792 5.6e-11 72.0 41 75.6
Duzib170G1055 Durio zibethinus HOM05D004888 ORTHO05D005792 5.6e-11 72.0 41 75.6
TWI39G0566 Tripterygium wilfordii HOM05D004888 ORTHO05D005792 5.6e-11 72.0 41 78.0
Ciclev10009934m.g Citrus clementina HOM05D004888 ORTHO05D005792 7.3e-11 71.6 41 75.6
Ciclev10009938m.g Citrus clementina HOM05D004888 ORTHO05D005792 7.3e-11 71.6 41 75.6
CsaV3_3G023050 Cucumis sativus L. HOM05D004888 ORTHO05D005792 7.3e-11 71.6 41 73.2
Sed0022426 Sechium edule HOM05D004888 ORTHO05D005792 7.3e-11 71.6 41 73.2
SGA_v2.0_scaffold8G04307 Striga asiatica HOM05D004888 ORTHO05D005792 7.3e-11 71.6 41 78.0
Cpa.g.sc97.18 Carica papaya HOM05D004888 ORTHO05D005792 9.5e-11 71.2 41 75.6
Gohir.D01G066100 Gossypium hirsutum HOM05D004888 ORTHO05D005792 9.5e-11 71.2 41 73.2
Gorai.002G088000 Gossypium raimondii HOM05D004888 ORTHO05D005792 9.5e-11 71.2 41 73.2
Actinidia05101 Actinidia chinensis HOM05D004888 ORTHO05D005792 1.2e-10 70.9 41 75.6
TWI38G0633 Tripterygium wilfordii HOM05D004888 ORTHO05D005792 1.2e-10 70.9 41 75.6
Aa31LG10G3270 Aethionema arabicum HOM05D004888 ORTHO05D005792 1.6e-10 70.5 41 78.0
ClCG05G014360 Citrullus lanatus HOM05D004888 ORTHO05D005792 1.6e-10 70.5 41 70.7
FAN21G0776 Fragaria x ananassa HOM05D004888 ORTHO05D005792 1.6e-10 70.5 61 55.7
FAN25G0554 Fragaria x ananassa HOM05D000287 ORTHO05D002423 1.6e-10 70.5 61 55.7
HanXRQChr11g0336191 Helianthus annuus HOM05D004888 ORTHO05D005792 1.6e-10 70.5 59 57.6
MD03G1204200 Malus domestica HOM05D004888 ORTHO05D005792 1.6e-10 70.5 62 56.5
THA.LOC104817873 Tarenaya hassleriana HOM05D004888 ORTHO05D005792 1.6e-10 70.5 41 73.2
Glyma.14G024900 Glycine max HOM05D004888 ORTHO05D005792 2.1e-10 70.1 41 73.2
RcHm_v2.0_Chr5g0039111 Rosa chinensis HOM05D004888 ORTHO05D005792 2.1e-10 70.1 61 55.7
Sed0003457 Sechium edule HOM05D004888 ORTHO05D005792 2.1e-10 70.1 41 73.2
Thecc.07G042500 Theobroma cacao HOM05D004888 ORTHO05D005792 2.1e-10 70.1 41 70.7
Aa31LG2G7640 Aethionema arabicum HOM05D001195 ORTHO05D001138 2.8e-10 69.7 187 35.8
Prupe.4G211200 Prunus persica HOM05D004888 ORTHO05D005792 2.8e-10 69.7 41 75.6
Dinv40745 Davidia involucrata HOM05D004888 ORTHO05D005792 3.6e-10 69.3 41 73.2
PSO541G5647 Papaver somniferum HOM05D004888 ORTHO05D005792 3.6e-10 69.3 41 73.2
PSO675G7988 Papaver somniferum HOM05D004888 ORTHO05D005792 3.6e-10 69.3 41 73.2
Phvul.008G266100 Phaseolus vulgaris HOM05D004888 ORTHO05D005792 3.6e-10 69.3 41 70.7
Potri.001G424000 Populus trichocarpa HOM05D004888 ORTHO05D005792 3.6e-10 69.3 41 73.2
COL.COLO4_09650 Corchorus olitorius HOM05D004888 ORTHO05D005792 4.7e-10 68.9 41 70.7
Duzib213G0117 Durio zibethinus HOM05D004888 ORTHO05D005792 4.7e-10 68.9 41 70.7
FvH4_3g22450 Fragaria vesca HOM05D004888 ORTHO05D005792 4.7e-10 68.9 61 55.7
FAN11G0846 Fragaria x ananassa HOM05D000287 ORTHO05D002423 4.7e-10 68.9 61 55.7
vmacro11732 Vaccinium macrocarpon HOM05D004888 ORTHO05D005792 4.7e-10 68.9 41 75.6
GSVIVG01037626001 Vitis vinifera HOM05D004888 ORTHO05D005792 4.7e-10 68.9 41 68.3
Migut.M01776 Erythranthe guttata HOM05D004888 ORTHO05D005792 6.2e-10 68.6 41 75.6
Sabra16G0288800 Salix brachista HOM05D004888 ORTHO05D005792 6.2e-10 68.6 41 73.2
Sc03g0008650 Simmondsia chinensis HOM05D004888 ORTHO05D005792 6.2e-10 68.6 41 68.3
Solyc10g006310.3 Solanum lycopersicum HOM05D004888 ORTHO05D005792 6.2e-10 68.6 41 73.2
ATR0752G132 Amborella trichopoda HOM05D004888 ORTHO05D005792 8.1e-10 68.2 41 73.2
EL10Ac4g07839 Beta vulgaris HOM05D004888 ORTHO05D005792 8.1e-10 68.2 41 73.2
Cfa020361 Carpinus fangiana HOM05D004888 ORTHO05D005792 8.1e-10 68.2 41 70.7
Eucgr.F03460 Eucalyptus grandis HOM05D004888 ORTHO05D005792 8.1e-10 68.2 41 73.2
Gohir.A04G018500 Gossypium hirsutum HOM05D004888 ORTHO05D005792 8.1e-10 68.2 41 70.7
Medtr5g092160 Medicago truncatula HOM05D004888 ORTHO05D005792 8.1e-10 68.2 41 70.7
Nitab4.5_0001393g0120 Nicotiana tabacum HOM05D004888 ORTHO05D005792 8.1e-10 68.2 41 73.2
Nitab4.5_0005048g0090 Nicotiana tabacum HOM05D004888 ORTHO05D005792 8.1e-10 68.2 41 73.2
Psat2g013600 Pisum sativum HOM05D004888 ORTHO05D005792 8.1e-10 68.2 41 70.7
Rhsim06G0216300 Rhododendron simsii HOM05D004888 ORTHO05D005792 8.1e-10 68.2 41 73.2
Sopen10g002260 Solanum pennellii HOM05D004888 ORTHO05D005792 8.1e-10 68.2 41 73.2
CSS0004402 Camellia sinensis var. sinensis HOM05D004888 ORTHO05D005792 1.1e-09 67.8 41 73.2
Cfa020359 Carpinus fangiana HOM05D000232 ORTHO05D000145 1.1e-09 67.8 41 70.7
CiPaw.12G128800 Carya illinoinensis HOM05D004888 ORTHO05D005792 1.1e-09 67.8 41 70.7
Cc05_g13810 Coffea canephora HOM05D004888 ORTHO05D005792 1.1e-09 67.8 41 68.3
ECA236G1052 Erigeron canadensis HOM05D004888 ORTHO05D005792 1.1e-09 67.8 59 52.5
Lsat_1_v5_gn_7_108760 Lactuca sativa HOM05D004888 ORTHO05D005792 1.1e-09 67.8 59 54.2
Oeu007587.1 Olea europaea HOM05D004888 ORTHO05D005792 1.1e-09 67.8 41 73.2
Oeu020120.2 Olea europaea HOM05D004888 ORTHO05D005792 1.1e-09 67.8 41 73.2
Hund23258 Selenicereus undatus HOM05D004888 ORTHO05D005792 1.1e-09 67.8 41 73.2
unitig_62.g23280 Utricularia gibba HOM05D004888 ORTHO05D005792 1.1e-09 67.8 41 75.6
AUR62015745 Chenopodium quinoa HOM05D004888 ORTHO05D005792 1.4e-09 67.4 41 73.2
Duzib268G1286 Durio zibethinus HOM05D004888 ORTHO05D005792 1.4e-09 67.4 41 65.9
PGSC0003DMG400014390 Solanum tuberosum HOM05D004888 ORTHO05D005792 1.4e-09 67.4 41 70.7
TPR.G1165 Trifolium pratense HOM05D004888 ORTHO05D005792 1.4e-09 67.4 41 68.3
Actinidia36945 Actinidia chinensis HOM05D004888 ORTHO05D005792 1.8e-09 67.0 41 73.2
Hma1.2p1_1222F.1_g268220 Hydrangea macrophylla HOM05D004888 ORTHO05D005792 1.8e-09 67.0 41 68.3
Manes.03G124500 Manihot esculenta HOM05D004888 ORTHO05D005792 1.8e-09 67.0 41 70.7
Sabra11G0123700 Salix brachista HOM05D004888 ORTHO05D005792 1.8e-09 67.0 41 68.3
Atru.chr2.3374 Acer truncatum HOM05D004888 ORTHO05D005792 2.3e-09 66.6 41 73.2
Ah.04g165810 Amaranthus hybridus HOM05D004888 ORTHO05D005792 2.3e-09 66.6 41 70.7
Aqoxy1G03261 Aquilegia oxysepala HOM05D004888 ORTHO05D005792 2.3e-09 66.6 41 68.3
CAN.G1781.4 Capsicum annuum HOM05D004888 ORTHO05D005792 2.3e-09 66.6 41 68.3
Haze_09660 Corylus avellana HOM05D004888 ORTHO05D005792 2.3e-09 66.6 41 70.7
Gohir.D05G367500 Gossypium hirsutum HOM05D004888 ORTHO05D005792 2.3e-09 66.6 41 68.3
Gorai.009G435100 Gossypium raimondii HOM05D004888 ORTHO05D005792 2.3e-09 66.6 41 68.3
PGR031G1607 Punica granatum HOM05D004888 ORTHO05D005792 2.3e-09 66.6 41 70.7
Manes.15G072900 Manihot esculenta HOM05D004888 ORTHO05D005792 3.1e-09 66.2 41 68.3
Peaxi162Scf00387g00025 Petunia axillaris HOM05D004888 ORTHO05D005792 3.1e-09 66.2 41 70.7
QL08p010712 Quercus lobata HOM05D004888 ORTHO05D005792 3.1e-09 66.2 41 70.7
QL08p011155 Quercus lobata HOM05D004888 ORTHO05D005792 3.1e-09 66.2 41 70.7
CAN.G337.120 Capsicum annuum HOM05D004888 ORTHO05D005792 4.0e-09 65.9 41 70.7
CDE05G3279 Ceratophyllum demersum HOM05D004888 ORTHO05D005792 4.0e-09 65.9 62 51.6
AUR62020467 Chenopodium quinoa HOM05D004888 ORTHO05D005792 4.0e-09 65.9 41 70.7
THA.LOC104798774 Tarenaya hassleriana HOM05D004888 ORTHO05D005792 4.0e-09 65.9 41 68.3
VMungo0647G2125 Vigna mungo HOM05D004888 ORTHO05D005792 4.0e-09 65.9 41 70.7
BolC2t11147H Brassica oleracea HOM05D001195 ORTHO05D001138 5.2e-09 65.5 110 40.9
Nitab4.5_0001913g0080 Nicotiana tabacum HOM05D004888 ORTHO05D005792 5.2e-09 65.5 41 70.7
Nitab4.5_0003812g0040 Nicotiana tabacum HOM05D004888 ORTHO05D005792 5.2e-09 65.5 41 70.7
CANSAT10G0001 Cannabis sativa HOM05D004888 ORTHO05D005792 6.8e-09 65.1 41 65.9
CANSAT21G1950 Cannabis sativa HOM05D004888 ORTHO05D005792 6.8e-09 65.1 41 65.9
TAR627G0539 Trochodendron aralioides HOM05D004888 ORTHO05D005792 6.8e-09 65.1 41 68.3
CDE11G1067 Ceratophyllum demersum HOM05D004888 ORTHO05D005792 8.9e-09 64.7 62 51.6
Thhalv10003531m.g Eutrema salsugineum HOM05D001195 ORTHO05D001138 8.9e-09 64.7 186 34.9
LjContig00272g0005832 Lotus japonicus HOM05D004888 ORTHO05D005792 8.9e-09 64.7 41 70.7
Peaxi162Scf00964g00141 Petunia axillaris HOM05D004888 ORTHO05D005792 8.9e-09 64.7 41 70.7
Hund02067 Selenicereus undatus HOM05D004888 ORTHO05D005792 8.9e-09 64.7 41 68.3
Ca_06312_v3 Cicer arietinum L. HOM05D004888 ORTHO05D005792 1.5e-08 63.9 41 65.9
Potri.011G138100 Populus trichocarpa HOM05D004888 ORTHO05D005792 1.5e-08 63.9 41 65.9
SHI31853 Sapria himalayana HOM05D004888 ORTHO05D005792 1.5e-08 63.9 41 68.3
PGSC0003DMG400022222 Solanum tuberosum HOM05D004888 ORTHO05D005792 1.5e-08 63.9 90 41.1
arahy.Tifrunner.gnm1.ann1.7UQ7HQ Arachis hypogaea HOM05D004888 ORTHO05D005792 2.6e-08 63.2 41 58.5
arahy.Tifrunner.gnm1.ann1.UMZK2D Arachis hypogaea HOM05D004888 ORTHO05D005792 2.6e-08 63.2 41 58.5
Mapoly0043s0001 Marchantia polymorpha HOM05D004888 ORTHO05D005792 2.6e-08 63.2 59 49.2
Solyc07g064470.4 Solanum lycopersicum HOM05D004888 ORTHO05D005792 2.6e-08 63.2 41 65.9
Sopen07g032670 Solanum pennellii HOM05D004888 ORTHO05D005792 2.6e-08 63.2 41 65.9
Zm00001eb048800 Zea mays HOM05D004888 ORTHO05D005792 3.4e-08 62.8 41 63.4
Zm00001eb219860 Zea mays HOM05D004888 ORTHO05D005792 3.4e-08 62.8 41 63.4
MBI18_g28089_MAGBIO Magnolia biondii HOM05D004888 ORTHO05D005792 4.4e-08 62.4 41 63.4
MBI18_g42744_MAGBIO Magnolia biondii HOM05D004888 ORTHO05D005792 4.4e-08 62.4 41 63.4
MBI18_g45255_MAGBIO Magnolia biondii HOM05D004888 ORTHO05D005792 4.4e-08 62.4 41 63.4
Nn1g07117 Nelumbo nucifera HOM05D004888 ORTHO05D005792 4.4e-08 62.4 41 61.0
Lalb_Chr04g0248511 Lupinus albus HOM05D004888 ORTHO05D005792 7.6e-08 61.6 41 63.4
Os03g0568500 Oryza sativa ssp. japonica HOM05D004888 ORTHO05D005792 7.6e-08 61.6 41 63.4
BcaC03g17144 Brassica carinata HOM05D001195 ORTHO05D001138 9.9e-08 61.2 122 36.9
C02p50640 Brassica napus HOM05D001195 ORTHO05D001138 9.9e-08 61.2 122 36.9
BraA02t08311Z Brassica rapa HOM05D001195 ORTHO05D001138 1.3e-07 60.8 115 38.3
DCAR_010046 Daucus carota HOM05D004888 ORTHO05D005792 1.3e-07 60.8 41 65.9
HanXRQChr09g0242141 Helianthus annuus HOM05D004888 ORTHO05D005792 1.7e-07 60.5 59 50.8
Pp3c25_1060 Physcomitrium patens HOM05D004888 ORTHO05D005792 2.9e-07 59.7 41 61.0
SMO270G0016 Selaginella moellendorffii HOM05D004888 ORTHO05D005792 2.9e-07 59.7 41 56.1
A06p43600 Brassica napus HOM05D001195 ORTHO05D001138 3.7e-07 59.3 165 38.2
THA.LOC104805130 Tarenaya hassleriana HOM05D001195 ORTHO05D001138 4.9e-07 58.9 187 31.0


User provided reference genes

Program Settings