Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp7g03030 Schrenkiella parvula HOM05D003991 ORTHO05D004883 2.7e-141 505.4 265 100.0
AT5G38880 Arabidopsis thaliana HOM05D003991 ORTHO05D004883 1.2e-72 277.3 242 65.7
Carub.0007s3697 Capsella rubella HOM05D003991 ORTHO05D004883 1.2e-72 277.3 242 65.7
AL7G51550 Arabidopsis lyrata HOM05D003991 ORTHO05D004883 1.3e-71 273.9 242 65.7
Thhalv10027646m.g Eutrema salsugineum HOM05D003991 ORTHO05D004883 3.0e-71 272.7 242 64.9
C09p04400 Brassica napus HOM05D003991 ORTHO05D004883 8.6e-71 271.2 246 62.2
Sp2g18130 Schrenkiella parvula HOM05D003991 ORTHO05D004883 1.5e-70 270.4 243 63.4
BcaC04g23813 Brassica carinata HOM05D003991 ORTHO05D004883 4.3e-70 268.9 246 61.8
BolC9t53370H Brassica oleracea HOM05D003991 ORTHO05D004883 4.3e-70 268.9 246 61.8
A09p04180 Brassica napus HOM05D003991 ORTHO05D004883 1.2e-69 267.3 244 61.9
Aa31LG2G3750 Aethionema arabicum HOM05D003991 ORTHO05D004883 1.6e-69 266.9 237 63.3
BcaC06g30850 Brassica carinata HOM05D003991 ORTHO05D004883 2.1e-69 266.5 243 61.7
BcaC06g33715 Brassica carinata HOM05D003991 ORTHO05D004883 2.1e-69 266.5 243 62.1
C07p38530 Brassica napus HOM05D003991 ORTHO05D004883 2.1e-69 266.5 243 62.1
BolC7t44375H Brassica oleracea HOM05D003991 ORTHO05D004883 2.1e-69 266.5 243 62.1
BraA09t36055Z Brassica rapa HOM05D003991 ORTHO05D004883 2.1e-69 266.5 243 61.3
BcaC04g23825 Brassica carinata HOM05D003991 ORTHO05D004883 2.8e-69 266.2 237 62.9
A06p39740 Brassica napus HOM05D003991 ORTHO05D004883 1.8e-68 263.5 243 61.3
BraA06t26889Z Brassica rapa HOM05D003991 ORTHO05D004883 1.8e-68 263.5 243 61.3
THA.LOC104822745 Tarenaya hassleriana HOM05D003991 ORTHO05D004883 1.8e-68 263.5 236 62.3
ClCG07G016050 Citrullus lanatus HOM05D003991 ORTHO05D004883 3.1e-68 262.7 233 61.4
Thhalv10003675m.g Eutrema salsugineum HOM05D003991 ORTHO05D004883 4.0e-68 262.3 237 62.4
Cfa007697 Carpinus fangiana HOM05D003991 ORTHO05D004883 5.8e-67 258.5 236 60.2
FAN05G5440 Fragaria x ananassa HOM05D003991 ORTHO05D004883 5.8e-67 258.5 236 61.9
FvH4_6g46350 Fragaria vesca HOM05D003991 ORTHO05D004883 1.7e-66 256.9 236 61.4
FAN14G3680 Fragaria x ananassa HOM05D003991 ORTHO05D004883 1.7e-66 256.9 236 61.4
FAN02G3988 Fragaria x ananassa HOM05D003991 ORTHO05D004883 2.2e-66 256.5 236 61.4
Lalb_Chr10g0092711 Lupinus albus HOM05D003991 ORTHO05D004883 2.2e-66 256.5 236 60.2
FAN09G2010 Fragaria x ananassa HOM05D003991 ORTHO05D004883 2.9e-66 256.1 236 61.4
CANSAT64G1645 Cannabis sativa HOM05D003991 ORTHO05D004883 4.9e-66 255.4 236 59.7
Haze_14380 Corylus avellana HOM05D003991 ORTHO05D004883 4.9e-66 255.4 238 59.2
Cpa.g.sc541.1 Carica papaya HOM05D003991 ORTHO05D004883 6.4e-66 255.0 236 60.6
RcHm_v2.0_Chr2g0164851 Rosa chinensis HOM05D003991 ORTHO05D004883 1.1e-65 254.2 236 61.0
Sed0026923 Sechium edule HOM05D003991 ORTHO05D004883 1.9e-65 253.4 236 59.3
arahy.Tifrunner.gnm1.ann1.T6I3L8 Arachis hypogaea HOM05D003991 ORTHO05D004883 2.4e-65 253.1 236 60.2
arahy.Tifrunner.gnm1.ann1.YA99EJ Arachis hypogaea HOM05D003991 ORTHO05D004883 2.4e-65 253.1 236 60.2
MSTRG.2973 Avicennia marina HOM05D003991 ORTHO05D004883 2.4e-65 253.1 236 58.9
MELO3C026296.2 Cucumis melo HOM05D003991 ORTHO05D004883 2.4e-65 253.1 236 59.3
CsaV3_4G010070 Cucumis sativus L. HOM05D003991 ORTHO05D004883 2.4e-65 253.1 236 59.3
Duzib138G0045 Durio zibethinus HOM05D003991 ORTHO05D004883 4.1e-65 252.3 236 58.9
COL.COLO4_10252 Corchorus olitorius HOM05D003991 ORTHO05D004883 5.4e-65 251.9 236 58.5
DCAR_011017 Daucus carota HOM05D003991 ORTHO05D004883 5.4e-65 251.9 237 59.1
Lj4A124G55 Lonicera japonica HOM05D003991 ORTHO05D004883 5.4e-65 251.9 237 57.4
CiPaw.03G082800 Carya illinoinensis HOM05D003991 ORTHO05D004883 7.1e-65 251.5 236 58.5
Ciclev10011098m.g Citrus clementina HOM05D003991 ORTHO05D004883 7.1e-65 251.5 236 59.7
Lj1g0022443 Lotus japonicus HOM05D003991 ORTHO05D004883 7.1e-65 251.5 236 60.2
MD17G1065900 Malus domestica HOM05D003991 ORTHO05D004883 7.1e-65 251.5 236 60.2
Hma1.2p1_1837F.1_g304750 Hydrangea macrophylla HOM05D003991 ORTHO05D004883 1.2e-64 250.8 236 58.5
Manes.02G059600 Manihot esculenta HOM05D003991 ORTHO05D004883 1.2e-64 250.8 239 58.6
GSVIVG01036544001 Vitis vinifera HOM05D003991 ORTHO05D004883 1.2e-64 250.8 236 58.5
Glyma.08G251400 Glycine max HOM05D003991 ORTHO05D004883 1.6e-64 250.4 246 56.5
TWI32G1311 Tripterygium wilfordii HOM05D003991 ORTHO05D004883 1.6e-64 250.4 236 59.3
MD09G1074500 Malus domestica HOM05D003991 ORTHO05D004883 3.5e-64 249.2 236 59.7
Prupe.3G248800 Prunus persica HOM05D003991 ORTHO05D004883 6.0e-64 248.4 236 59.7
Thecc.04G106400 Theobroma cacao HOM05D003991 ORTHO05D004883 1.0e-63 247.7 236 57.6
Glyma.18G274100 Glycine max HOM05D003991 ORTHO05D004883 1.7e-63 246.9 246 55.7
VMungo1383G3466 Vigna mungo HOM05D003991 ORTHO05D004883 1.7e-63 246.9 236 58.9
Duzib133G0226 Durio zibethinus HOM05D003991 ORTHO05D004883 2.3e-63 246.5 237 58.6
Oeu007082.1 Olea europaea HOM05D003991 ORTHO05D004883 2.3e-63 246.5 236 57.2
Nitab4.5_0001434g0090 Nicotiana tabacum HOM05D003991 ORTHO05D004883 3.0e-63 246.1 234 59.0
Ca_06908_v3 Cicer arietinum L. HOM05D003991 ORTHO05D004883 3.9e-63 245.7 236 58.1
Gohir.D07G186400 Gossypium hirsutum HOM05D003991 ORTHO05D004883 3.9e-63 245.7 236 57.6
Gorai.001G207000 Gossypium raimondii HOM05D003991 ORTHO05D004883 3.9e-63 245.7 236 57.6
Phvul.008G026400 Phaseolus vulgaris HOM05D003991 ORTHO05D004883 6.6e-63 245.0 239 58.2
SalBow1G2342 Salvia bowleyana HOM05D003991 ORTHO05D004883 8.6e-63 244.6 239 56.5
Solyc03g046590.3 Solanum lycopersicum HOM05D003991 ORTHO05D004883 8.6e-63 244.6 244 57.0
Eucgr.I02064 Eucalyptus grandis HOM05D003991 ORTHO05D004883 1.1e-62 244.2 235 57.9
Gohir.A07G179600 Gossypium hirsutum HOM05D003991 ORTHO05D004883 1.1e-62 244.2 236 57.2
TPR.G23393 Trifolium pratense HOM05D003991 ORTHO05D004883 1.1e-62 244.2 236 57.2
TWI34G0665 Tripterygium wilfordii HOM05D003991 ORTHO05D004883 1.1e-62 244.2 236 57.6
Atru.chr8.642 Acer truncatum HOM05D003991 ORTHO05D004883 1.5e-62 243.8 236 58.9
Manes.01G103600 Manihot esculenta HOM05D003991 ORTHO05D004883 1.5e-62 243.8 236 57.6
Potri.017G100300 Populus trichocarpa HOM05D003991 ORTHO05D004883 1.9e-62 243.4 237 59.1
Sabra17G0086400 Salix brachista HOM05D003991 ORTHO05D004883 1.9e-62 243.4 237 59.1
Sopen03g010790 Solanum pennellii HOM05D003991 ORTHO05D004883 3.3e-62 242.7 240 57.5
Medtr7g016900 Medicago truncatula HOM05D003991 ORTHO05D004883 4.3e-62 242.3 237 57.4
Cc07_g04500 Coffea canephora HOM05D003991 ORTHO05D004883 5.6e-62 241.9 236 57.6
Aqoxy3G03722 Aquilegia oxysepala HOM05D003991 ORTHO05D004883 7.3e-62 241.5 236 56.4
TAR374G0063 Trochodendron aralioides HOM05D003991 ORTHO05D004883 9.5e-62 241.1 236 56.4
CAN.G427.3 Capsicum annuum HOM05D003991 ORTHO05D004883 1.6e-61 240.4 240 56.7
vmacro18126 Vaccinium macrocarpon HOM05D003991 ORTHO05D004883 1.6e-61 240.4 239 56.5
SGA_v2.0_scaffold148G36448 Striga asiatica HOM05D003991 ORTHO05D004883 2.1e-61 240.0 239 55.2
CiPaw.04G052100 Carya illinoinensis HOM05D003991 ORTHO05D004883 2.8e-61 239.6 236 56.4
CSS0050035 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 3.6e-61 239.2 233 57.5
Peaxi162Scf01002g00121 Petunia axillaris HOM05D003991 ORTHO05D004883 3.6e-61 239.2 237 56.1
TAR622G0714 Trochodendron aralioides HOM05D003991 ORTHO05D004883 3.6e-61 239.2 236 56.8
Psat3g203280 Pisum sativum HOM05D003991 ORTHO05D004883 6.2e-61 238.4 236 55.5
ECA246G2054 Erigeron canadensis HOM05D003991 ORTHO05D004883 1.1e-60 237.7 236 55.5
CSS0001564 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 1.4e-60 237.3 238 55.9
Nitab4.5_0000154g0150 Nicotiana tabacum HOM05D003991 ORTHO05D004883 1.8e-60 236.9 236 56.4
Lsat_1_v5_gn_3_96860 Lactuca sativa HOM05D003991 ORTHO05D004883 4.0e-60 235.7 241 53.9
Potri.004G114600 Populus trichocarpa HOM05D003991 ORTHO05D004883 4.0e-60 235.7 237 57.8
HanXRQChr02g0043871 Helianthus annuus HOM05D003991 ORTHO05D004883 1.2e-59 234.2 236 54.2
MBI17_g07944_MAGBIO Magnolia biondii HOM05D003991 ORTHO05D004883 1.2e-59 234.2 236 56.4
PGR004G0075 Punica granatum HOM05D003991 ORTHO05D004883 1.2e-59 234.2 236 55.5
Rhsim08G0077400 Rhododendron simsii HOM05D003991 ORTHO05D004883 1.5e-59 233.8 256 53.5
Nn4g23516 Nelumbo nucifera HOM05D003991 ORTHO05D004883 1.7e-58 230.3 237 54.0
ATR0605G126 Amborella trichopoda HOM05D003991 ORTHO05D004883 2.9e-58 229.6 243 55.1
unitig_748.g8415 Utricularia gibba HOM05D003991 ORTHO05D004883 2.9e-58 229.6 236 53.4
PSO063G1675 Papaver somniferum HOM05D003991 ORTHO05D004883 3.8e-58 229.2 236 53.8
EL10Ac2g04440 Beta vulgaris HOM05D003991 ORTHO05D004883 6.4e-58 228.4 248 52.8
Ah.16g101030 Amaranthus hybridus HOM05D003991 ORTHO05D004883 8.4e-58 228.0 237 55.3
AUR62009479 Chenopodium quinoa HOM05D003991 ORTHO05D004883 1.9e-57 226.9 237 54.4
Hund13674 Selenicereus undatus HOM05D003991 ORTHO05D004883 2.4e-57 226.5 234 53.0
PSO782G2666 Papaver somniferum HOM05D003991 ORTHO05D004883 4.2e-57 225.7 236 53.0
AUR62023158 Chenopodium quinoa HOM05D003991 ORTHO05D004883 6.0e-56 221.9 237 54.0
Lsat_1_v5_gn_2_90201 Lactuca sativa HOM05D003991 ORTHO05D004883 3.3e-54 216.1 236 51.7
CDE06G2000 Ceratophyllum demersum HOM05D003991 ORTHO05D004883 7.3e-54 214.9 237 50.6
Os09g0386600 Oryza sativa ssp. japonica HOM05D003991 ORTHO05D004883 2.4e-52 209.9 244 51.6
HPP92_025879 Vanilla planifolia HOM05D003991 ORTHO05D004883 4.0e-52 209.1 237 48.5
Zm00001eb311840 Zea mays HOM05D003991 ORTHO05D004883 3.4e-51 206.1 241 51.0
SEGI_18103 Sequoiadendron giganteum HOM05D003991 ORTHO05D004883 3.0e-47 193.0 237 46.8
Actinidia26270 Actinidia chinensis HOM05D003991 ORTHO05D004883 4.3e-46 189.1 144 64.6
ECA238G0416 Erigeron canadensis HOM05D003991 ORTHO05D004883 4.3e-46 189.1 236 47.0
BcaB04g19523 Brassica carinata HOM05D003991 ORTHO05D004883 3.6e-45 186.0 150 64.0
HanXRQChr07g0200011 Helianthus annuus HOM05D003991 ORTHO05D004883 5.3e-44 182.2 240 46.2
Sc11g0008820 Simmondsia chinensis HOM05D003991 ORTHO05D004883 2.9e-42 176.4 140 62.1
Migut.O00382 Erythranthe guttata HOM05D003991 ORTHO05D004883 5.4e-41 172.2 236 44.1
Pp3c9_9760 Physcomitrium patens HOM05D003991 ORTHO05D004883 1.3e-39 167.5 242 40.5
Pp3c9_9870 Physcomitrium patens HOM05D003991 ORTHO05D004883 1.3e-39 167.5 242 40.5
Zm00001eb099080 Zea mays HOM05D003991 ORTHO05D004883 6.7e-39 165.2 133 62.4
MBI17_g36999_MAGBIO Magnolia biondii HOM05D003991 ORTHO05D004883 1.5e-38 164.1 165 53.9
SMO147G0301 Selaginella moellendorffii HOM05D003991 ORTHO05D004883 3.7e-37 159.5 254 36.2
ECA285G0010 Erigeron canadensis HOM05D003991 ORTHO05D004883 6.2e-37 158.7 145 56.6
Dinv33866 Davidia involucrata HOM05D003991 ORTHO05D004883 8.1e-37 158.3 104 76.0
Pp3c10_8720 Physcomitrium patens HOM05D003991 ORTHO05D004883 1.8e-36 157.1 261 37.5
Pp3c15_7610 Physcomitrium patens HOM05D003991 ORTHO05D004883 2.6e-35 153.3 248 38.3
Mapoly0016s0130 Marchantia polymorpha HOM05D003991 ORTHO05D004883 4.9e-34 149.1 256 36.7
BcaC04g23815 Brassica carinata HOM05D003991 ORTHO05D004883 4.5e-27 125.9 237 41.4
SMO147G0173 Selaginella moellendorffii HOM05D003991 ORTHO05D004883 1.3e-26 124.4 214 35.0
Aa31LG1G6630 Aethionema arabicum HOM05D003991 ORTHO05D004883 2.2e-26 123.6 153 49.0
AagrBONN_evm.TU.Sc2ySwM_344.1887 Anthoceros agrestis HOM05D003991 ORTHO05D004883 7.1e-25 118.6 240 34.6
CBR_g36314 Chara braunii HOM05D003991 ORTHO05D004883 3.2e-17 93.2 163 35.0
arahy.Tifrunner.gnm1.ann1.52AFQE Arachis hypogaea HOM05D003991 ORTHO05D004883 4.3e-14 82.8 52 75.0
arahy.Tifrunner.gnm1.ann1.994D9I Arachis hypogaea HOM05D003991 ORTHO05D004883 4.3e-14 82.8 52 75.0
arahy.Tifrunner.gnm1.ann1.VU455X Arachis hypogaea HOM05D003991 ORTHO05D004883 4.3e-14 82.8 52 75.0
arahy.Tifrunner.gnm1.ann1.YE0A4T Arachis hypogaea HOM05D003991 ORTHO05D004883 4.3e-14 82.8 52 75.0
HPP92_006579 Vanilla planifolia HOM05D003991 ORTHO05D004883 1.7e-13 80.9 67 61.2
Cfa002005 Carpinus fangiana HOM05D003991 ORTHO05D009743 1.2e-11 74.7 49 75.5
BcaC04g23819 Brassica carinata HOM05D003991 ORTHO05D004883 1.0e-10 71.6 53 71.7


User provided reference genes

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