Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp7g01340 Schrenkiella parvula HOM05D005844 ORTHO05D007203 6.3e-160 567.4 288 100.0
C04p47350 Brassica napus HOM05D005844 ORTHO05D007203 1.1e-140 503.4 289 90.0
A04p13570 Brassica napus HOM05D005844 ORTHO05D007203 4.3e-140 501.5 289 89.6
Thhalv10027875m.g Eutrema salsugineum HOM05D005844 ORTHO05D007203 5.6e-140 501.1 289 88.6
BcaB02g07945 Brassica carinata HOM05D005844 ORTHO05D007203 4.3e-132 474.9 290 86.9
BcaB06g27527 Brassica carinata HOM05D005844 ORTHO05D007203 2.4e-127 459.1 289 83.7
BraA04t17017Z Brassica rapa HOM05D005844 ORTHO05D007203 1.1e-124 450.3 269 86.6
Carub.0007s3499 Capsella rubella HOM05D005844 ORTHO05D007203 1.5e-124 449.9 291 83.2
BolC4t26336H Brassica oleracea HOM05D005844 ORTHO05D007203 6.2e-123 444.5 269 85.9
AT5G40530 Arabidopsis thaliana HOM05D005844 ORTHO05D007203 4.4e-121 438.3 289 81.3
THA.LOC104823955 Tarenaya hassleriana HOM05D005844 ORTHO05D007203 1.2e-118 430.3 289 77.9
AL7G49290 Arabidopsis lyrata HOM05D005844 ORTHO05D007203 5.1e-117 424.9 233 90.6
Aa31LG9G1090 Aethionema arabicum HOM05D005844 ORTHO05D007203 2.5e-116 422.5 291 77.3
THA.LOC104805364 Tarenaya hassleriana HOM05D005844 ORTHO05D007203 4.4e-113 411.8 290 74.8
Cpa.g.c26638.3 Carica papaya HOM05D005844 ORTHO05D007203 2.6e-105 386.0 291 68.7
Ciclev10016139m.g Citrus clementina HOM05D005844 ORTHO05D007203 1.9e-103 379.8 254 72.4
Gohir.A05G355200 Gossypium hirsutum HOM05D005844 ORTHO05D007203 1.2e-102 377.1 289 67.8
Gohir.D04G058000 Gossypium hirsutum HOM05D005844 ORTHO05D007203 2.1e-102 376.3 289 67.8
Potri.001G344000 Populus trichocarpa HOM05D005844 ORTHO05D007203 2.7e-102 375.9 251 72.9
Gorai.012G064700 Gossypium raimondii HOM05D005844 ORTHO05D007203 1.0e-101 374.0 289 67.1
Duzib187G1685 Durio zibethinus HOM05D005844 ORTHO05D007203 1.9e-100 369.8 293 66.9
Thecc.04G018700 Theobroma cacao HOM05D005844 ORTHO05D007203 1.9e-100 369.8 291 66.3
FAN05G4937 Fragaria x ananassa HOM05D005844 ORTHO05D007203 1.3e-99 367.1 282 67.0
COL.COLO4_29165 Corchorus olitorius HOM05D005844 ORTHO05D007203 3.1e-98 362.5 221 76.0
Actinidia36121 Actinidia chinensis HOM05D005844 ORTHO05D007203 4.0e-98 362.1 229 73.8
Cfa007347 Carpinus fangiana HOM05D005844 ORTHO05D007203 6.9e-98 361.3 229 74.7
Sabra16G0223300 Salix brachista HOM05D005844 ORTHO05D007203 1.2e-97 360.5 271 67.5
RcHm_v2.0_Chr2g0173161 Rosa chinensis HOM05D005844 ORTHO05D007203 2.0e-97 359.8 267 68.2
HanXRQChr02g0043121 Helianthus annuus HOM05D005844 ORTHO05D007203 5.8e-97 358.2 237 71.7
Rhsim10G0015300 Rhododendron simsii HOM05D005844 ORTHO05D007203 9.9e-97 357.5 238 72.7
Rhsim10G0016000 Rhododendron simsii HOM05D005844 ORTHO05D007203 9.9e-97 357.5 238 72.7
MD17G1023500 Malus domestica HOM05D005844 ORTHO05D007203 1.3e-96 357.1 295 63.4
FAN09G1449 Fragaria x ananassa HOM05D005844 ORTHO05D007203 2.2e-96 356.3 282 65.6
Sc16g0003190 Simmondsia chinensis HOM05D005844 ORTHO05D007203 2.2e-96 356.3 220 76.4
FAN02G1237 Fragaria x ananassa HOM05D005844 ORTHO05D007203 2.9e-96 355.9 282 65.6
QL02p074142 Quercus lobata HOM05D005844 ORTHO05D007203 2.9e-96 355.9 286 64.3
vmacro05871 Vaccinium macrocarpon HOM05D005844 ORTHO05D007203 2.9e-96 355.9 296 63.2
CiPaw.03G045000 Carya illinoinensis HOM05D005844 ORTHO05D007203 3.8e-96 355.5 285 64.2
Nn4g22606 Nelumbo nucifera HOM05D005844 ORTHO05D007203 4.9e-96 355.1 252 67.1
FvH4_6g51630 Fragaria vesca HOM05D005844 ORTHO05D007203 8.4e-96 354.4 286 65.7
PGR142G0612 Punica granatum HOM05D005844 ORTHO05D007203 8.4e-96 354.4 259 68.7
FAN14G2428 Fragaria x ananassa HOM05D005844 ORTHO05D007203 1.1e-95 354.0 286 65.7
Actinidia05987 Actinidia chinensis HOM05D005844 ORTHO05D007203 3.2e-95 352.4 289 64.7
Dinv33434 Davidia involucrata HOM05D005844 ORTHO05D007203 4.2e-95 352.1 251 68.1
Dinv09631 Davidia involucrata HOM05D005844 ORTHO05D007203 7.1e-95 351.3 251 67.7
Prupe.3G293000 Prunus persica HOM05D005844 ORTHO05D007203 7.1e-95 351.3 227 74.0
GSVIVG01032391001 Vitis vinifera HOM05D005844 ORTHO05D007203 1.2e-94 350.5 221 74.7
CSS0012729 Camellia sinensis var. sinensis HOM05D005844 ORTHO05D007203 4.6e-94 348.6 288 62.8
Solyc02g093390.4 Solanum lycopersicum HOM05D005844 ORTHO05D007203 6.0e-94 348.2 238 69.3
Eucgr.I01735 Eucalyptus grandis HOM05D005844 ORTHO05D007203 1.0e-93 347.4 258 64.7
TWI36G0829 Tripterygium wilfordii HOM05D005844 ORTHO05D007203 1.0e-93 347.4 259 66.4
ECA247G4055 Erigeron canadensis HOM05D005844 ORTHO05D007203 1.3e-93 347.1 287 62.0
Aqoxy5G03753 Aquilegia oxysepala HOM05D005844 ORTHO05D007203 1.8e-93 346.7 280 63.9
ClCG09G019300 Citrullus lanatus HOM05D005844 ORTHO05D007203 1.8e-93 346.7 293 62.1
CsaV3_5G027090 Cucumis sativus L. HOM05D005844 ORTHO05D007203 2.3e-93 346.3 293 62.1
Hma1.2p1_2550F.1_g324230 Hydrangea macrophylla HOM05D005844 ORTHO05D007203 3.0e-93 345.9 289 65.1
TWI56G0011 Tripterygium wilfordii HOM05D005844 ORTHO05D007203 3.9e-93 345.5 286 63.6
Lj1g0026070 Lotus japonicus HOM05D005844 ORTHO05D007203 1.5e-92 343.6 242 68.6
Medtr7g033530 Medicago truncatula HOM05D005844 ORTHO05D007203 4.3e-92 342.0 256 65.6
SalBow7G1242 Salvia bowleyana HOM05D005844 ORTHO05D007203 4.3e-92 342.0 237 70.0
Manes.15G150500 Manihot esculenta HOM05D005844 ORTHO05D007203 1.3e-91 340.5 288 63.9
Phvul.004G044500 Phaseolus vulgaris HOM05D005844 ORTHO05D007203 3.7e-91 339.0 260 64.6
PGSC0003DMG400012605 Solanum tuberosum HOM05D005844 ORTHO05D007203 4.8e-91 338.6 290 61.7
Cc07_g01570 Coffea canephora HOM05D005844 ORTHO05D007203 6.2e-91 338.2 256 65.2
VMungo0464G1123 Vigna mungo HOM05D005844 ORTHO05D007203 8.1e-91 337.8 244 68.4
DCAR_021727 Daucus carota HOM05D005844 ORTHO05D007203 1.4e-90 337.0 220 70.5
CARHR261450 Cardamine hirsuta HOM05D005844 ORTHO05D007203 1.8e-90 336.7 179 92.7
unitig_46.g18705 Utricularia gibba HOM05D005844 ORTHO05D007203 3.1e-90 335.9 282 61.3
Medtr2g062880 Medicago truncatula HOM05D005844 ORTHO05D007203 4.0e-90 335.5 255 65.1
Os02g0593900 Oryza sativa ssp. japonica HOM05D005844 ORTHO05D007203 5.3e-90 335.1 237 65.8
Nitab4.5_0003318g0030 Nicotiana tabacum HOM05D005844 ORTHO05D007203 6.9e-90 334.7 290 62.1
Sopen02g037980 Solanum pennellii HOM05D005844 ORTHO05D007203 9.0e-90 334.3 290 60.7
Migut.K01404 Erythranthe guttata HOM05D005844 ORTHO05D007203 4.5e-89 332.0 285 61.1
CANSAT64G0956 Cannabis sativa HOM05D005844 ORTHO05D007203 5.8e-89 331.6 296 59.8
Dinv07356 Davidia involucrata HOM05D005844 ORTHO05D007203 1.0e-88 330.9 249 65.1
SGA_v2.0_scaffold18G08274 Striga asiatica HOM05D005844 ORTHO05D007203 1.0e-88 330.9 228 68.9
Zm00001eb205620 Zea mays HOM05D005844 ORTHO05D007203 1.3e-88 330.5 236 64.8
arahy.Tifrunner.gnm1.ann1.RG8FT8 Arachis hypogaea HOM05D005844 ORTHO05D007203 3.8e-88 328.9 220 69.5
PSO407G0181 Papaver somniferum HOM05D005844 ORTHO05D007203 4.9e-88 328.6 255 64.7
MSTRG.3288 Avicennia marina HOM05D005844 ORTHO05D007203 6.5e-88 328.2 286 60.1
Haze_14753 Corylus avellana HOM05D005844 ORTHO05D007203 5.5e-87 325.1 259 62.5
Lalb_Chr08g0243241 Lupinus albus HOM05D005844 ORTHO05D007203 9.3e-87 324.3 290 59.3
PSO111G0092 Papaver somniferum HOM05D005844 ORTHO05D007203 1.6e-86 323.6 255 64.3
MELO3C021585.2 Cucumis melo HOM05D005844 ORTHO05D007203 1.0e-85 320.9 290 59.0
HPP92_020245 Vanilla planifolia HOM05D005844 ORTHO05D007203 8.7e-85 317.8 286 59.8
ATR0824G194 Amborella trichopoda HOM05D005844 ORTHO05D007203 1.5e-84 317.0 290 60.3
Nitab4.5_0001860g0130 Nicotiana tabacum HOM05D005844 ORTHO05D007203 1.1e-82 310.8 283 60.1
Glyma.19G056800 Glycine max HOM05D005844 ORTHO05D007203 2.4e-82 309.7 260 60.4
CSS0002651 Camellia sinensis var. sinensis HOM05D005844 ORTHO05D007203 9.0e-82 307.8 288 58.3
SMO169G0126 Selaginella moellendorffii HOM05D005844 ORTHO05D007203 9.0e-82 307.8 221 66.1
Cfa007344 Carpinus fangiana HOM05D005844 ORTHO05D007203 1.2e-81 307.4 295 57.6
Psat4g044480 Pisum sativum HOM05D005844 ORTHO05D007203 1.2e-81 307.4 310 54.8
CDE09G0856 Ceratophyllum demersum HOM05D005844 ORTHO05D007203 2.6e-81 306.2 201 71.6
Mapoly0055s0119 Marchantia polymorpha HOM05D005844 ORTHO05D007203 2.5e-79 299.7 238 59.7
Sed0014974 Sechium edule HOM05D005844 ORTHO05D007203 1.2e-78 297.4 248 63.7
Lj7A600G48 Lonicera japonica HOM05D005844 ORTHO05D007203 3.6e-78 295.8 182 76.9
PSO754G0028 Papaver somniferum HOM05D005844 ORTHO05D007203 4.6e-78 295.4 253 58.9
AagrBONN_evm.TU.Sc2ySwM_344.1282 Anthoceros agrestis HOM05D005844 ORTHO05D007203 1.5e-76 290.4 287 54.4
Glyma.16G069400 Glycine max HOM05D005844 ORTHO05D007203 1.9e-76 290.0 239 61.5
Pp3c18_8570 Physcomitrium patens HOM05D005844 ORTHO05D007203 5.7e-76 288.5 256 54.7
VMungo1215G2157 Vigna mungo HOM05D005844 ORTHO05D007203 5.7e-76 288.5 219 65.3
Lsat_1_v5_gn_1_11001 Lactuca sativa HOM05D005844 ORTHO05D007203 1.5e-73 280.4 174 77.6
Hma1.2p1_1747F.1_g300470 Hydrangea macrophylla HOM05D005844 ORTHO05D007203 2.6e-73 279.6 183 73.8
arahy.Tifrunner.gnm1.ann1.V6CENM Arachis hypogaea HOM05D005844 ORTHO05D007203 7.7e-73 278.1 260 55.8
Ca_08532_v3 Cicer arietinum L. HOM05D005844 ORTHO05D007203 3.8e-72 275.8 281 55.2
Ca_25854_v3 Cicer arietinum L. HOM05D005844 ORTHO05D007203 3.8e-72 275.8 221 62.9
TAR629G2614 Trochodendron aralioides HOM05D005844 ORTHO05D007203 1.1e-71 274.2 231 63.2
CBR_g37477 Chara braunii HOM05D005844 ORTHO05D007203 7.2e-71 271.6 269 51.7
Peaxi162Scf00129g01647 Petunia axillaris HOM05D005844 ORTHO05D007203 1.2e-70 270.8 183 69.9
EL10Ac6g14092 Beta vulgaris HOM05D005844 ORTHO05D007203 2.7e-70 269.6 270 54.8
MBI06_g16054_MAGBIO Magnolia biondii HOM05D005844 ORTHO05D007203 1.2e-65 254.2 292 49.3
CAN.G473.16 Capsicum annuum HOM05D005844 ORTHO05D007203 2.7e-62 243.0 164 70.1
Ah.03g137020 Amaranthus hybridus HOM05D001812 ORTHO05D001874 5.9e-57 225.3 193 59.1
Cfa007349 Carpinus fangiana HOM05D005844 ORTHO05D007203 6.5e-56 221.9 292 48.6
MCO16G365 Micromonas commoda HOM05D005844 ORTHO05D007203 6.5e-56 221.9 232 51.3
Cre07.g323450 Chlamydomonas reinhardtii HOM05D005844 ORTHO05D007203 1.6e-49 200.7 265 41.5
SHI16461 Sapria himalayana HOM05D005844 ORTHO05D007203 6.5e-48 195.3 308 38.6
Atru.chr6.2417 Acer truncatum HOM05D005844 ORTHO05D007203 1.2e-44 184.5 126 71.4
PRCOL_00001214 Prasinoderma coloniale HOM05D005844 ORTHO05D007203 3.7e-43 179.5 283 38.5
TPR.G1078 Trifolium pratense HOM05D005844 ORTHO05D007203 2.7e-41 173.3 127 65.4
TPR.G11046 Trifolium pratense HOM05D005844 ORTHO05D007203 5.9e-41 172.2 144 61.1
vmacro09039 Vaccinium macrocarpon HOM05D005844 ORTHO05D007203 4.2e-39 166.0 311 40.8
BolC4t27198H Brassica oleracea HOM05D005844 ORTHO05D007203 1.2e-38 164.5 195 54.9
TPR.G35964 Trifolium pratense HOM05D005844 ORTHO05D007203 2.1e-38 163.7 113 69.9
TAR629G1250 Trochodendron aralioides HOM05D005844 ORTHO05D007203 8.8e-37 158.3 122 63.9
SMO202G0011 Selaginella moellendorffii HOM05D005844 ORTHO05D007203 1.2e-33 147.9 116 62.1
Cfa024741 Carpinus fangiana HOM05D005844 ORTHO05D007203 1.4e-26 124.4 285 32.3
Atru.chr2.3681 Acer truncatum HOM05D005844 ORTHO05D007203 4.1e-26 122.9 77 77.9
QL12p001810 Quercus lobata HOM05D005844 ORTHO05D007203 3.0e-24 116.7 72 73.6
Rhsim10G0015100 Rhododendron simsii HOM05D014363 ORTHO05D019497 1.1e-23 114.8 78 70.5
SEGI_32629 Sequoiadendron giganteum HOM05D005844 ORTHO05D007203 6.2e-22 109.0 81 66.7
CARHR261460 Cardamine hirsuta HOM05D005844 ORTHO05D007203 6.8e-21 105.5 56 89.3
AUR62043289 Chenopodium quinoa HOM05D005844 ORTHO05D007203 3.6e-14 83.2 76 53.9
SHI16462 Sapria himalayana HOM05D005844 ORTHO05D007203 7.1e-10 68.9 109 41.3


User provided reference genes

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