Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp7g01150 Schrenkiella parvula HOM05D003681 ORTHO05D004703 0.0e+00 1421.4 742 100.0
Thhalv10027657m.g Eutrema salsugineum HOM05D003681 ORTHO05D004703 0.0e+00 1364.4 743 96.6
A04p13760 Brassica napus HOM05D003681 ORTHO05D004703 0.0e+00 1351.3 744 96.1
BraA04t17035Z Brassica rapa HOM05D003681 ORTHO05D004703 0.0e+00 1350.1 742 96.0
BraA07t29742Z Brassica rapa HOM05D003681 ORTHO05D004703 0.0e+00 1350.1 742 95.7
C04p47540 Brassica napus HOM05D003681 ORTHO05D004703 0.0e+00 1348.2 742 95.6
BolC6t37131H Brassica oleracea HOM05D003681 ORTHO05D004703 0.0e+00 1345.9 742 95.1
BolC4t26356H Brassica oleracea HOM05D003681 ORTHO05D004703 0.0e+00 1339.3 742 94.6
A07p20510 Brassica napus HOM05D003681 ORTHO05D004703 0.0e+00 1338.9 742 95.1
BcaB02g07929 Brassica carinata HOM05D003681 ORTHO05D004703 0.0e+00 1332.0 742 94.6
AT5G40740 Arabidopsis thaliana HOM05D003681 ORTHO05D004703 0.0e+00 1330.1 743 93.9
AL7G49000 Arabidopsis lyrata HOM05D003681 ORTHO05D004703 0.0e+00 1328.5 743 93.8
Carub.0007s3474 Capsella rubella HOM05D003681 ORTHO05D004703 0.0e+00 1328.2 743 93.7
C06p19360 Brassica napus HOM05D003681 ORTHO05D004703 0.0e+00 1326.6 742 94.1
BcaC08g44481 Brassica carinata HOM05D003681 ORTHO05D004703 0.0e+00 1326.2 742 94.1
CARHR213770 Cardamine hirsuta HOM05D003681 ORTHO05D004703 0.0e+00 1322.8 744 93.5
Aa31LG9G900 Aethionema arabicum HOM05D003681 ORTHO05D004703 0.0e+00 1291.9 748 91.4
BcaB06g27549 Brassica carinata HOM05D003681 ORTHO05D004703 0.0e+00 1285.8 743 92.3
THA.LOC104805345 Tarenaya hassleriana HOM05D003681 ORTHO05D004703 0.0e+00 1186.8 751 84.3
Cpa.g.sc130.41 Carica papaya HOM05D003681 ORTHO05D004703 0.0e+00 1082.4 747 76.7
QL02p072923 Quercus lobata HOM05D003681 ORTHO05D004703 5.4e-304 1047.3 749 74.5
Atru.chr6.2486 Acer truncatum HOM05D003681 ORTHO05D004703 1.1e-301 1039.6 748 74.6
Ciclev10014307m.g Citrus clementina HOM05D003681 ORTHO05D004703 1.8e-299 1032.3 734 75.2
Thecc.04G027500 Theobroma cacao HOM05D003681 ORTHO05D004703 2.0e-298 1028.9 747 73.8
TWI12G0555 Tripterygium wilfordii HOM05D003681 ORTHO05D004703 2.2e-297 1025.4 748 73.3
CiPaw.04G033000 Carya illinoinensis HOM05D003681 ORTHO05D004703 3.0e-294 1015.0 748 73.3
Manes.17G107300 Manihot esculenta HOM05D003681 ORTHO05D004703 1.6e-292 1009.2 749 72.4
Duzib187G0106 Durio zibethinus HOM05D003681 ORTHO05D004703 2.8e-292 1008.4 746 71.7
Gohir.D09G033600 Gossypium hirsutum HOM05D003681 ORTHO05D004703 2.8e-292 1008.4 764 71.5
CiPaw.03G050400 Carya illinoinensis HOM05D003681 ORTHO05D004703 3.6e-292 1008.1 748 72.3
Gorai.006G038600 Gossypium raimondii HOM05D003681 ORTHO05D004703 4.7e-292 1007.7 764 71.3
Dinv33384 Davidia involucrata HOM05D003681 ORTHO05D004703 5.2e-291 1004.2 748 72.1
TWI36G0744 Tripterygium wilfordii HOM05D003681 ORTHO05D004703 5.2e-291 1004.2 748 71.8
GSVIVG01001851001 Vitis vinifera HOM05D003681 ORTHO05D004703 5.2e-291 1004.2 748 70.7
MD09G1017400 Malus domestica HOM05D003681 ORTHO05D004703 1.3e-289 999.6 747 72.8
CSS0025950 Camellia sinensis var. sinensis HOM05D003681 ORTHO05D004703 2.2e-289 998.8 748 71.7
Manes.15G156300 Manihot esculenta HOM05D003681 ORTHO05D004703 2.9e-289 998.4 747 71.9
CANSAT64G2654 Cannabis sativa HOM05D003681 ORTHO05D004703 3.7e-289 998.0 753 71.4
Actinidia18423 Actinidia chinensis HOM05D003681 ORTHO05D004703 6.4e-289 997.3 747 71.4
MD17G1018200 Malus domestica HOM05D003681 ORTHO05D004703 8.3e-289 996.9 747 72.4
Potri.001G337700 Populus trichocarpa HOM05D003681 ORTHO05D004703 8.3e-289 996.9 747 73.4
Gohir.A09G033400 Gossypium hirsutum HOM05D003681 ORTHO05D004703 1.4e-288 996.1 764 70.5
Gohir.A11G065000 Gossypium hirsutum HOM05D003681 ORTHO05D004703 2.4e-288 995.3 747 71.8
Eucgr.I01693 Eucalyptus grandis HOM05D003681 ORTHO05D004703 5.4e-288 994.2 746 70.9
Prupe.3G299500 Prunus persica HOM05D003681 ORTHO05D004703 9.2e-288 993.4 747 71.8
Potri.001G337600 Populus trichocarpa HOM05D003681 ORTHO05D004703 1.5e-285 986.1 747 72.7
Haze_14813 Corylus avellana HOM05D003681 ORTHO05D004703 7.3e-285 983.8 758 70.7
Dinv25694 Davidia involucrata HOM05D003681 ORTHO05D004703 4.7e-284 981.1 748 70.2
PGR142G3554 Punica granatum HOM05D003681 ORTHO05D004703 4.7e-284 981.1 750 71.1
Cfa007279 Carpinus fangiana HOM05D003681 ORTHO05D004703 8.1e-284 980.3 717 73.1
CsaV3_3G027310 Cucumis sativus L. HOM05D003681 ORTHO05D004703 1.1e-283 979.9 747 71.1
Glyma.05G073400 Glycine max HOM05D003681 ORTHO05D004703 1.4e-283 979.5 749 71.2
Phvul.004G057300 Phaseolus vulgaris HOM05D003681 ORTHO05D004703 1.4e-283 979.5 752 70.7
Glyma.19G077600 Glycine max HOM05D003681 ORTHO05D004703 2.3e-283 978.8 749 71.3
COL.COLO4_29274 Corchorus olitorius HOM05D003681 ORTHO05D004703 4.0e-283 978.0 738 71.0
VMungo0464G1197 Vigna mungo HOM05D003681 ORTHO05D004703 1.2e-282 976.5 747 71.0
Sed0015235 Sechium edule HOM05D003681 ORTHO05D004703 2.0e-282 975.7 746 70.8
Gohir.D10G085200 Gossypium hirsutum HOM05D003681 ORTHO05D004703 7.5e-282 973.8 747 70.1
Gohir.D11G069300 Gossypium hirsutum HOM05D003681 ORTHO05D004703 9.9e-282 973.4 747 70.5
Actinidia16950 Actinidia chinensis HOM05D003681 ORTHO05D004703 2.2e-281 972.2 747 70.1
Gorai.007G074100 Gossypium raimondii HOM05D003681 ORTHO05D004703 2.2e-281 972.2 747 70.7
Gorai.011G093100 Gossypium raimondii HOM05D003681 ORTHO05D004703 6.4e-281 970.7 747 70.1
ClCG05G013220 Citrullus lanatus HOM05D003681 ORTHO05D004703 1.4e-280 969.5 747 70.7
RcHm_v2.0_Chr2g0174171 Rosa chinensis HOM05D003681 ORTHO05D004703 1.3e-278 963.0 748 71.0
TAR374G1530 Trochodendron aralioides HOM05D003681 ORTHO05D004703 8.6e-278 960.3 747 68.5
Sed0021158 Sechium edule HOM05D003681 ORTHO05D004703 7.3e-277 957.2 747 70.5
arahy.Tifrunner.gnm1.ann1.0QF2GW Arachis hypogaea HOM05D003681 ORTHO05D004703 1.6e-276 956.1 748 69.9
Lj2g0006828 Lotus japonicus HOM05D003681 ORTHO05D004703 2.1e-276 955.7 751 70.4
Sc03g0006880 Simmondsia chinensis HOM05D003681 ORTHO05D004703 6.8e-275 950.7 746 69.2
Sabra16G0218500 Salix brachista HOM05D003681 ORTHO05D004703 1.2e-274 949.9 749 70.0
CSS0035050 Camellia sinensis var. sinensis HOM05D003681 ORTHO05D004703 3.4e-274 948.3 747 68.8
Aqoxy3G01435 Aquilegia oxysepala HOM05D003681 ORTHO05D004703 4.4e-274 948.0 748 68.4
Lalb_Chr02g0157941 Lupinus albus HOM05D003681 ORTHO05D004703 2.7e-271 938.7 745 68.7
TAR622G1195 Trochodendron aralioides HOM05D003681 ORTHO05D004703 2.7e-271 938.7 752 67.0
Lj7A605G77 Lonicera japonica HOM05D003681 ORTHO05D004703 4.6e-271 937.9 740 70.0
PGSC0003DMG400006971 Solanum tuberosum HOM05D003681 ORTHO05D004703 3.9e-270 934.9 746 67.8
FAN14G5093 Fragaria x ananassa HOM05D003681 ORTHO05D004703 8.7e-270 933.7 767 68.4
FvH4_6g52640 Fragaria vesca HOM05D003681 ORTHO05D004703 2.5e-269 932.2 749 69.3
CAN.G473.58 Capsicum annuum HOM05D003681 ORTHO05D004703 5.6e-269 931.0 748 68.0
Psat1g082400 Pisum sativum HOM05D003681 ORTHO05D004703 5.6e-269 931.0 748 69.1
PGSC0003DMG400020227 Solanum tuberosum HOM05D003681 ORTHO05D004703 9.6e-269 930.2 745 68.5
Sopen02g038450 Solanum pennellii HOM05D003681 ORTHO05D004703 8.1e-268 927.2 747 68.5
Sopen02g017120 Solanum pennellii HOM05D003681 ORTHO05D004703 4.0e-267 924.9 748 67.1
Solyc02g093810.3 Solanum lycopersicum HOM05D003681 ORTHO05D004703 1.2e-266 923.3 747 68.0
Cc07_g00400 Coffea canephora HOM05D003681 ORTHO05D004703 2.6e-266 922.2 746 68.2
FAN09G4630 Fragaria x ananassa HOM05D003681 ORTHO05D004703 5.8e-266 921.0 767 67.5
Nn4g22444 Nelumbo nucifera HOM05D003681 ORTHO05D004703 9.9e-266 920.2 751 66.7
CAN.G1057.25 Capsicum annuum HOM05D003681 ORTHO05D004703 1.7e-265 919.5 750 67.5
vmacro05923 Vaccinium macrocarpon HOM05D003681 ORTHO05D004703 1.7e-265 919.5 738 68.4
PSO017G2495 Papaver somniferum HOM05D003681 ORTHO05D004703 2.9e-265 918.7 757 66.2
FAN02G4174 Fragaria x ananassa HOM05D003681 ORTHO05D004703 4.9e-265 917.9 749 68.6
FAN05G4404 Fragaria x ananassa HOM05D003681 ORTHO05D004703 4.6e-263 911.4 794 65.6
Medtr6g022730 Medicago truncatula HOM05D003681 ORTHO05D004703 6.0e-263 911.0 749 68.4
Lalb_Chr21g0317601 Lupinus albus HOM05D003681 ORTHO05D004703 7.8e-263 910.6 745 67.2
Solyc02g067990.3 Solanum lycopersicum HOM05D003681 ORTHO05D004703 4.3e-261 904.8 731 66.9
MSTRG.3111 Avicennia marina HOM05D003681 ORTHO05D004703 1.4e-259 899.8 748 67.4
EL10Ac4g08610 Beta vulgaris HOM05D003681 ORTHO05D004703 1.8e-259 899.4 732 67.1
CSS0007013 Camellia sinensis var. sinensis HOM05D003681 ORTHO05D004703 1.8e-259 899.4 701 68.5
Migut.H00059 Erythranthe guttata HOM05D003681 ORTHO05D004703 1.8e-259 899.4 751 66.3
Nitab4.5_0000040g0490 Nicotiana tabacum HOM05D003681 ORTHO05D004703 1.8e-259 899.4 751 66.0
TAR371G0788 Trochodendron aralioides HOM05D003681 ORTHO05D004703 5.3e-259 897.9 747 65.3
Peaxi162Scf00420g00351 Petunia axillaris HOM05D003681 ORTHO05D004703 9.0e-259 897.1 731 66.5
Sabra16G0218400 Salix brachista HOM05D003681 ORTHO05D004703 9.0e-259 897.1 732 68.4
vmacro18313 Vaccinium macrocarpon HOM05D003681 ORTHO05D004703 4.5e-258 894.8 747 65.5
Hma1.2p1_0279F.1_g112260 Hydrangea macrophylla HOM05D003681 ORTHO05D004703 7.6e-258 894.0 791 63.2
AUR62036017 Chenopodium quinoa HOM05D003681 ORTHO05D004703 2.9e-257 892.1 730 67.7
Hund06716 Selenicereus undatus HOM05D003681 ORTHO05D004703 3.8e-257 891.7 734 66.5
PSO478G5006 Papaver somniferum HOM05D003681 ORTHO05D004703 1.6e-255 886.3 752 65.3
Actinidia36165 Actinidia chinensis HOM05D003681 ORTHO05D004703 2.1e-255 885.9 730 66.3
MBI11_g11079_MAGBIO Magnolia biondii HOM05D003681 ORTHO05D004703 4.6e-255 884.8 753 62.8
Ca_04403_v3 Cicer arietinum L. HOM05D003681 ORTHO05D004703 1.3e-254 883.2 732 67.9
Oeu050433.3 Olea europaea HOM05D003681 ORTHO05D004703 1.3e-254 883.2 756 64.9
SGA_v2.0_scaffold18G08242 Striga asiatica HOM05D003681 ORTHO05D004703 3.9e-254 881.7 764 66.1
SalBow1G2960 Salvia bowleyana HOM05D003681 ORTHO05D004703 6.7e-254 880.9 731 67.2
SalBow1G7977 Salvia bowleyana HOM05D003681 ORTHO05D004703 6.7e-254 880.9 731 67.2
HanXRQChr07g0199161 Helianthus annuus HOM05D003681 ORTHO05D004703 2.5e-253 879.0 747 65.6
Rhsim10G0011100 Rhododendron simsii HOM05D003681 ORTHO05D004703 3.3e-253 878.6 740 65.8
Nitab4.5_0008718g0020 Nicotiana tabacum HOM05D003681 ORTHO05D004703 9.6e-253 877.1 737 65.5
ECA238G4183 Erigeron canadensis HOM05D003681 ORTHO05D004703 9.9e-250 867.1 724 65.5
Oeu058755.3 Olea europaea HOM05D003681 ORTHO05D004703 1.9e-248 862.8 788 61.9
Rhsim08G0046300 Rhododendron simsii HOM05D003681 ORTHO05D004703 4.2e-248 861.7 752 63.3
Peaxi162Scf00080g01724 Petunia axillaris HOM05D003681 ORTHO05D004703 7.4e-245 850.9 732 64.5
Sc03g0007020 Simmondsia chinensis HOM05D003681 ORTHO05D004703 2.8e-244 849.0 744 63.8
Nitab4.5_0001863g0130 Nicotiana tabacum HOM05D003681 ORTHO05D004703 4.8e-244 848.2 732 63.5
AUR62035509 Chenopodium quinoa HOM05D003681 ORTHO05D004703 3.4e-242 842.0 716 65.8
Lj1g0019639 Lotus japonicus HOM05D003681 ORTHO05D004703 5.7e-237 824.7 754 62.1
SGA_v2.0_scaffold135G34941 Striga asiatica HOM05D003681 ORTHO05D004703 5.3e-235 818.1 783 60.5
TPR.G36528 Trifolium pratense HOM05D003681 ORTHO05D004703 4.5e-234 815.1 804 60.9
Gohir.A10G160600 Gossypium hirsutum HOM05D003681 ORTHO05D004703 1.7e-228 796.6 554 75.6
Lsat_1_v5_gn_2_93641 Lactuca sativa HOM05D003681 ORTHO05D004703 1.5e-226 790.0 757 60.9
Os02g0329300 Oryza sativa ssp. japonica HOM05D003681 ORTHO05D004703 1.2e-223 780.4 756 59.8
CDE07G0234 Ceratophyllum demersum HOM05D003681 ORTHO05D004703 1.3e-212 743.8 758 56.5
ATR0824G011 Amborella trichopoda HOM05D003681 ORTHO05D004703 3.7e-212 742.3 723 58.8
Zm00001eb235200 Zea mays HOM05D003681 ORTHO05D004703 1.0e-209 734.2 735 58.4
HPP92_006269 Vanilla planifolia HOM05D003681 ORTHO05D004703 1.3e-209 733.8 747 57.7
TAR374G1355 Trochodendron aralioides HOM05D003681 ORTHO05D004703 5.4e-195 685.3 440 79.3
unitig_21.g20482 Utricularia gibba HOM05D003681 ORTHO05D004703 8.0e-191 671.4 769 53.2
CDE04G2610 Ceratophyllum demersum HOM05D003681 ORTHO05D004703 5.9e-186 655.2 728 52.5
unitig_744.g24365 Utricularia gibba HOM05D003681 ORTHO05D004703 9.8e-173 611.3 690 53.0
DCAR_011289 Daucus carota HOM05D003681 ORTHO05D004703 1.9e-163 580.5 573 58.8
QL07p006188 Quercus lobata HOM05D003681 ORTHO05D004703 5.4e-163 578.9 372 79.8
Mapoly0032s0042 Marchantia polymorpha HOM05D003681 ORTHO05D004703 3.2e-139 500.0 733 44.2
SHI03860 Sapria himalayana HOM05D003681 ORTHO05D004703 4.8e-135 486.1 440 62.3
SMO367G0854 Selaginella moellendorffii HOM05D003681 ORTHO05D004703 1.1e-131 474.9 623 47.4
QL09p045970 Quercus lobata HOM05D003681 ORTHO05D004703 1.5e-128 464.5 303 78.5
Pp3c13_14720 Physcomitrium patens HOM05D003681 ORTHO05D004703 4.2e-123 446.4 757 42.0
Pp3c13_14730 Physcomitrium patens HOM05D003681 ORTHO05D004703 4.2e-123 446.4 757 42.0
Pp3c4_18170 Physcomitrium patens HOM05D003681 ORTHO05D004703 7.4e-120 435.6 612 46.2
MELO3C014854.2 Cucumis melo HOM05D003681 ORTHO05D004703 8.2e-119 432.2 448 56.5
Pp3c3_25790 Physcomitrium patens HOM05D003681 ORTHO05D004703 1.2e-114 418.3 513 47.2
SEGI_13919 Sequoiadendron giganteum HOM05D003681 ORTHO05D004703 5.9e-101 372.9 350 58.3
Actinidia35791 Actinidia chinensis HOM05D003681 ORTHO05D004703 3.6e-90 337.0 287 65.9
CBR_g66670 Chara braunii HOM05D003681 ORTHO05D004703 1.0e-89 335.5 482 42.9
SGA_v2.0_scaffold135G34947 Striga asiatica HOM05D003681 ORTHO05D004703 3.0e-89 334.0 258 69.4
RcHm_v2.0_Chr2g0109021 Rosa chinensis HOM05D002608 ORTHO05D004703 1.8e-86 324.7 282 62.8
Nn3g16565 Nelumbo nucifera HOM05D003681 ORTHO05D004703 6.8e-81 306.2 184 84.8
MBI06_g35146_MAGBIO Magnolia biondii HOM05D003681 ORTHO05D004703 5.0e-76 290.0 355 49.9
AagrBONN_evm.TU.Sc2ySwM_228.437 Anthoceros agrestis HOM05D003681 ORTHO05D004703 2.6e-64 251.1 413 39.7
SMO367G0212 Selaginella moellendorffii HOM05D003681 ORTHO05D004703 2.2e-63 248.1 589 37.9
RcHm_v2.0_Chr5g0047251 Rosa chinensis HOM05D002608 ORTHO05D021346 9.8e-56 222.6 461 36.4
TAR629G3339 Trochodendron aralioides HOM05D003681 ORTHO05D030546 1.4e-49 202.2 639 28.8
SMO367G0417 Selaginella moellendorffii HOM05D003681 ORTHO05D004703 1.2e-48 199.1 613 35.2
Lsat_1_v5_gn_3_79520 Lactuca sativa HOM05D003681 ORTHO05D004703 8.1e-42 176.4 192 54.2
RcHm_v2.0_Chr6g0248701 Rosa chinensis HOM05D002608 ORTHO05D013040 3.4e-40 171.0 110 76.4
SMO275G0043 Selaginella moellendorffii HOM05D003681 ORTHO05D030546 1.0e-36 159.5 131 65.6
DCAR_011288 Daucus carota HOM05D003681 ORTHO05D004703 4.0e-33 147.5 167 52.7
BcaC05g26953 Brassica carinata HOM05D003681 ORTHO05D024003 4.4e-32 144.1 72 95.8
C05p28020 Brassica napus HOM05D003681 ORTHO05D024003 4.4e-32 144.1 72 95.8
BolC5t31529H Brassica oleracea HOM05D003681 ORTHO05D024003 7.1e-30 136.7 72 94.4
RcHm_v2.0_Chr2g0096321 Rosa chinensis HOM05D003681 ORTHO05D004703 1.2e-29 136.0 90 72.2
RcHm_v2.0_Chr5g0045391 Rosa chinensis HOM05D003681 ORTHO05D004703 1.2e-29 136.0 90 72.2
RcHm_v2.0_Chr2g0166591 Rosa chinensis HOM05D003681 ORTHO05D004703 4.6e-29 134.0 76 89.5
SHI03859 Sapria himalayana HOM05D000105 ORTHO05D000023 8.1e-26 123.2 299 35.1
Hma1.2p1_0026F.1_g016370 Hydrangea macrophylla HOM05D003681 ORTHO05D004703 1.3e-20 105.9 226 35.0
RcHm_v2.0_Chr6g0248711 Rosa chinensis HOM05D003681 ORTHO05D030546 1.5e-19 102.4 51 94.1
MBI02_g11376_MAGBIO Magnolia biondii HOM05D003681 ORTHO05D024003 2.1e-18 98.6 60 73.3
SEGI_23209 Sequoiadendron giganteum HOM05D003681 ORTHO05D004703 1.4e-17 95.9 296 33.1
Lsat_1_v5_gn_2_93681 Lactuca sativa HOM05D006130 ORTHO05D007491 4.0e-17 94.4 50 90.0
vmacro18312 Vaccinium macrocarpon HOM05D004367 ORTHO05D004937 2.0e-16 92.0 158 38.0
SEGI_03694 Sequoiadendron giganteum HOM05D003681 ORTHO05D024003 6.5e-15 87.0 60 65.0
SMO275G0001 Selaginella moellendorffii HOM05D003681 ORTHO05D004703 1.9e-14 85.5 84 58.3
ECA247G3396 Erigeron canadensis HOM05D003681 ORTHO05D004703 2.5e-14 85.1 69 65.2
SMO367G0834 Selaginella moellendorffii HOM05D003681 ORTHO05D030546 1.6e-13 82.4 85 54.1
VMungo1127G0394 Vigna mungo HOM05D003681 ORTHO05D004703 6.3e-10 70.5 88 48.9
Hma1.2p1_0006F.1_g004670 Hydrangea macrophylla HOM05D003681 ORTHO05D004703 5.5e-06 57.4 236 28.4


User provided reference genes

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