Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp7g00380 Schrenkiella parvula HOM05D004803 ORTHO05D005653 2.2e-24 115.2 75 100.0
BcaC08g44541 Brassica carinata HOM05D004803 ORTHO05D005653 5.5e-23 110.5 75 72.0
BcaB02g07882 Brassica carinata HOM05D004803 ORTHO05D005653 6.1e-22 107.1 75 68.0
CARHR272970 Cardamine hirsuta HOM05D004803 ORTHO05D005653 6.1e-22 107.1 75 77.3
Thhalv10028124m.g Eutrema salsugineum HOM05D004803 ORTHO05D005653 1.8e-21 105.5 75 72.0
AL7G47670 Arabidopsis lyrata HOM05D004803 ORTHO05D005653 2.3e-21 105.1 75 74.7
Carub.0007s3380 Capsella rubella HOM05D004803 ORTHO05D005653 3.9e-21 104.4 75 66.7
BcaC02g08933 Brassica carinata HOM05D004803 ORTHO05D005653 2.6e-20 101.7 50 94.0
A04p14850 Brassica napus HOM05D004803 ORTHO05D005653 2.6e-20 101.7 50 94.0
C04p48720 Brassica napus HOM05D004803 ORTHO05D005653 2.6e-20 101.7 50 94.0
C04p48770 Brassica napus HOM05D004803 ORTHO05D005653 2.6e-20 101.7 50 94.0
C04p48830 Brassica napus HOM05D004803 ORTHO05D005653 2.6e-20 101.7 50 94.0
BolC4t26463H Brassica oleracea HOM05D004803 ORTHO05D005653 2.6e-20 101.7 50 94.0
BolC4t26468H Brassica oleracea HOM05D004803 ORTHO05D005653 2.6e-20 101.7 50 94.0
BraA04t17117Z Brassica rapa HOM05D004803 ORTHO05D005653 2.6e-20 101.7 50 94.0
BcaB06g27645 Brassica carinata HOM05D004803 ORTHO05D005653 4.4e-20 100.9 50 92.0
BcaB07g31446 Brassica carinata HOM05D004803 ORTHO05D005653 5.7e-20 100.5 50 92.0
A04p14790 Brassica napus HOM05D004803 ORTHO05D005653 7.4e-20 100.1 49 93.9
A04p18870 Brassica napus HOM05D004803 ORTHO05D005653 7.4e-20 100.1 49 93.9
Aa31LG9G390 Aethionema arabicum HOM05D004803 ORTHO05D005653 2.2e-19 98.6 50 88.0
BraA04t17123Z Brassica rapa HOM05D004803 ORTHO05D005653 2.8e-19 98.2 48 93.8
AT5G41685 Arabidopsis thaliana HOM05D004803 ORTHO05D005653 6.3e-19 97.1 76 64.5
THA.LOC104823604 Tarenaya hassleriana HOM05D004803 ORTHO05D005653 1.1e-18 96.3 50 86.0
BcaB07g31518 Brassica carinata HOM05D004803 ORTHO05D005653 1.4e-18 95.9 49 89.8
THA.LOC104817698 Tarenaya hassleriana HOM05D004803 ORTHO05D005653 1.8e-18 95.5 50 84.0
TWI14G1226 Tripterygium wilfordii HOM05D004803 ORTHO05D005653 3.1e-18 94.7 75 57.3
Thhalv10023788m.g Eutrema salsugineum HOM05D004803 ORTHO05D005653 5.3e-18 94.0 49 87.8
Aa31LG2G1260 Aethionema arabicum HOM05D004803 ORTHO05D005653 7.0e-18 93.6 50 80.0
TWI39G0014 Tripterygium wilfordii HOM05D004803 ORTHO05D005653 1.2e-17 92.8 50 78.0
PSO063G0965 Papaver somniferum HOM05D004803 ORTHO05D005653 2.0e-17 92.0 48 89.6
AL2G10780 Arabidopsis lyrata HOM05D004803 ORTHO05D005653 1.0e-16 89.7 50 82.0
BcaC04g22640 Brassica carinata HOM05D004803 ORTHO05D005653 1.0e-16 89.7 50 82.0
AT1G64220 Arabidopsis thaliana HOM05D004803 ORTHO05D005653 1.3e-16 89.4 47 83.0
Carub.0002s0057 Capsella rubella HOM05D004803 ORTHO05D005653 1.3e-16 89.4 50 80.0
BcaC04g22540 Brassica carinata HOM05D004803 ORTHO05D005653 2.9e-16 88.2 49 81.6
BcaC04g22545 Brassica carinata HOM05D004803 ORTHO05D005653 2.9e-16 88.2 49 81.6
BcaC04g22642 Brassica carinata HOM05D004803 ORTHO05D005653 2.9e-16 88.2 49 81.6
BcaC04g22643 Brassica carinata HOM05D004803 ORTHO05D005653 2.9e-16 88.2 49 81.6
BolC9t54698H Brassica oleracea HOM05D004803 ORTHO05D005653 2.9e-16 88.2 49 81.6
CARHR046710 Cardamine hirsuta HOM05D004803 ORTHO05D005653 2.9e-16 88.2 49 79.6
C09p18010 Brassica napus HOM05D004803 ORTHO05D005653 3.8e-16 87.8 49 79.6
BolC9t54609H Brassica oleracea HOM05D004803 ORTHO05D005653 3.8e-16 87.8 50 78.0
Manes.13G122700 Manihot esculenta HOM05D004803 ORTHO05D005653 5.0e-16 87.4 75 54.7
Duzib128G1472 Durio zibethinus HOM05D004803 ORTHO05D005653 6.5e-16 87.0 50 74.0
FvH4_4g06260 Fragaria vesca HOM05D004803 ORTHO05D005653 6.5e-16 87.0 47 83.0
FAN12G1038 Fragaria x ananassa HOM05D004803 ORTHO05D005653 6.5e-16 87.0 47 83.0
FAN22G0315 Fragaria x ananassa HOM05D004803 ORTHO05D005653 6.5e-16 87.0 47 83.0
Manes.12G104200 Manihot esculenta HOM05D004803 ORTHO05D005653 6.5e-16 87.0 75 54.7
A09p14890 Brassica napus HOM05D004803 ORTHO05D005653 8.5e-16 86.7 49 77.6
BraA09t37134Z Brassica rapa HOM05D004803 ORTHO05D005653 8.5e-16 86.7 49 77.6
CARHR231140 Cardamine hirsuta HOM05D004803 ORTHO05D005653 8.5e-16 86.7 47 83.0
Cpa.g.sc116.72 Carica papaya HOM05D004803 ORTHO05D005653 8.5e-16 86.7 50 74.0
Sc12g0011260 Simmondsia chinensis HOM05D004803 ORTHO05D005653 8.5e-16 86.7 48 72.9
Aa31LG6G6980 Aethionema arabicum HOM05D004803 ORTHO05D005653 1.5e-15 85.9 47 78.7
MD13G1234800 Malus domestica HOM05D004803 ORTHO05D005653 1.5e-15 85.9 50 76.0
Atru.chr7.977 Acer truncatum HOM05D004803 ORTHO05D005653 1.9e-15 85.5 50 74.0
Ciclev10003057m.g Citrus clementina HOM05D004803 ORTHO05D005653 1.9e-15 85.5 50 72.0
COL.COLO4_24021 Corchorus olitorius HOM05D004803 ORTHO05D005653 1.9e-15 85.5 50 72.0
QL11p009265 Quercus lobata HOM05D004803 ORTHO05D005653 1.9e-15 85.5 74 55.4
RcHm_v2.0_Chr4g0397981 Rosa chinensis HOM05D004803 ORTHO05D005653 1.9e-15 85.5 47 83.0
Sp7g21690 Schrenkiella parvula HOM05D004803 ORTHO05D005653 1.9e-15 85.5 48 75.0
C04p48860 Brassica napus HOM05D004803 ORTHO05D005653 2.5e-15 85.1 50 80.0
Cfa020735 Carpinus fangiana HOM05D004803 ORTHO05D005653 2.5e-15 85.1 75 54.7
FAN17G0329 Fragaria x ananassa HOM05D004803 ORTHO05D005653 2.5e-15 85.1 47 80.9
Gohir.A13G115000 Gossypium hirsutum HOM05D004803 ORTHO05D005653 2.5e-15 85.1 50 72.0
Gohir.D13G117900 Gossypium hirsutum HOM05D004803 ORTHO05D005653 2.5e-15 85.1 50 72.0
Gorai.013G132400 Gossypium raimondii HOM05D004803 ORTHO05D005653 2.5e-15 85.1 50 72.0
CiPaw.15G155100 Carya illinoinensis HOM05D004803 ORTHO05D005653 3.2e-15 84.7 75 56.0
Duzib106G0817 Durio zibethinus HOM05D004803 ORTHO05D005653 3.2e-15 84.7 50 72.0
Potri.018G146602 Populus trichocarpa HOM05D004803 ORTHO05D005653 4.2e-15 84.3 73 53.4
Prupe.1G065700 Prunus persica HOM05D004803 ORTHO05D005653 4.2e-15 84.3 50 78.0
vmacro20779 Vaccinium macrocarpon HOM05D004803 ORTHO05D005653 4.2e-15 84.3 45 82.2
FAN07G1450 Fragaria x ananassa HOM05D004803 ORTHO05D005653 5.5e-15 84.0 47 78.7
Solyc07g015970.3 Solanum lycopersicum HOM05D004803 ORTHO05D005653 5.5e-15 84.0 47 78.7
Ciclev10023194m.g Citrus clementina HOM05D004803 ORTHO05D005653 7.2e-15 83.6 50 72.0
Migut.B00847 Erythranthe guttata HOM05D004803 ORTHO05D005653 9.4e-15 83.2 47 76.6
Sopen07g005800 Solanum pennellii HOM05D004803 ORTHO05D005653 9.4e-15 83.2 47 76.6
Sopen07g005820 Solanum pennellii HOM05D004803 ORTHO05D005653 9.4e-15 83.2 47 76.6
CSS0040541 Camellia sinensis var. sinensis HOM05D004803 ORTHO05D005653 1.2e-14 82.8 50 74.0
CAN.G54.3 Capsicum annuum HOM05D004803 ORTHO05D005653 1.2e-14 82.8 47 76.6
Nitab4.5_0000413g0050 Nicotiana tabacum HOM05D004803 ORTHO05D005653 1.2e-14 82.8 47 76.6
Nitab4.5_0005014g0030 Nicotiana tabacum HOM05D004803 ORTHO05D005653 1.2e-14 82.8 47 76.6
Peaxi162Scf00320g00053 Petunia axillaris HOM05D004803 ORTHO05D005653 1.2e-14 82.8 47 76.6
Thecc.07G084900 Theobroma cacao HOM05D004803 ORTHO05D005653 1.2e-14 82.8 47 72.3
CANSAT80G0011 Cannabis sativa HOM05D004803 ORTHO05D005653 1.6e-14 82.4 50 70.0
MBI13_g31565_MAGBIO Magnolia biondii HOM05D004803 ORTHO05D005653 1.6e-14 82.4 50 74.0
MD16G1239600 Malus domestica HOM05D004803 ORTHO05D005653 1.6e-14 82.4 50 74.0
Zm00001eb358730 Zea mays HOM05D004803 ORTHO05D005653 1.6e-14 82.4 48 72.9
Lalb_Chr16g0390871 Lupinus albus HOM05D004803 ORTHO05D005653 2.1e-14 82.0 45 77.8
MBI11_g11974_MAGBIO Magnolia biondii HOM05D004803 ORTHO05D005653 2.1e-14 82.0 50 72.0
Nitab4.5_0004188g0060 Nicotiana tabacum HOM05D004803 ORTHO05D005653 2.1e-14 82.0 47 74.5
Nitab4.5_0005411g0060 Nicotiana tabacum HOM05D004803 ORTHO05D005653 2.1e-14 82.0 47 74.5
Potri.006G077500 Populus trichocarpa HOM05D004803 ORTHO05D005653 2.1e-14 82.0 73 53.4
PGR083G2338 Punica granatum HOM05D004803 ORTHO05D005653 2.1e-14 82.0 50 68.0
SalBow5G1850 Salvia bowleyana HOM05D004803 ORTHO05D005653 2.1e-14 82.0 47 74.5
PGSC0003DMG400021021 Solanum tuberosum HOM05D004803 ORTHO05D005653 2.1e-14 82.0 47 74.5
Lsat_1_v5_gn_7_59621 Lactuca sativa HOM05D004803 ORTHO05D005653 2.7e-14 81.6 50 70.0
Lsat_1_v5_gn_7_59641 Lactuca sativa HOM05D004803 ORTHO05D005653 2.7e-14 81.6 50 70.0
Sed0007901 Sechium edule HOM05D004803 ORTHO05D005653 3.6e-14 81.3 50 72.0
Aqoxy7G02691 Aquilegia oxysepala HOM05D004803 ORTHO05D005653 4.7e-14 80.9 47 70.2
ClCG06G014040 Citrullus lanatus HOM05D004803 ORTHO05D005653 4.7e-14 80.9 50 72.0
MELO3C019213.2 Cucumis melo HOM05D004803 ORTHO05D005653 4.7e-14 80.9 50 72.0
CsaV3_2G035410 Cucumis sativus L. HOM05D004803 ORTHO05D005653 4.7e-14 80.9 49 71.4
Potri.018G145502 Populus trichocarpa HOM05D004803 ORTHO05D005653 4.7e-14 80.9 73 50.7
TAR636G2654 Trochodendron aralioides HOM05D004803 ORTHO05D005653 4.7e-14 80.9 50 70.0
ECA240G2554 Erigeron canadensis HOM05D004803 ORTHO05D005653 6.1e-14 80.5 45 75.6
Glyma.08G027900 Glycine max HOM05D004803 ORTHO05D005653 6.1e-14 80.5 50 72.0
Medtr3g462060 Medicago truncatula HOM05D004803 ORTHO05D005653 6.1e-14 80.5 75 57.3
Nitab4.5_0010123g0030 Nicotiana tabacum HOM05D004803 ORTHO05D005653 6.1e-14 80.5 47 74.5
Ca_17414_v3 Cicer arietinum L. HOM05D004803 ORTHO05D005653 8.0e-14 80.1 50 72.0
Glyma.05G221400 Glycine max HOM05D004803 ORTHO05D005653 8.0e-14 80.1 50 70.0
Hma1.2p1_0284F.1_g113820 Hydrangea macrophylla HOM05D004803 ORTHO05D005653 8.0e-14 80.1 47 72.3
Pp3c17_18760 Physcomitrium patens HOM05D004803 ORTHO05D005653 8.0e-14 80.1 47 76.6
HPP92_006365 Vanilla planifolia HOM05D004803 ORTHO05D005653 1.0e-13 79.7 45 75.6
unitig_899.g15187 Utricularia gibba HOM05D004803 ORTHO05D005653 1.4e-13 79.3 45 80.0
Medtr2g067370 Medicago truncatula HOM05D004803 ORTHO05D005653 1.8e-13 79.0 50 70.0
HanXRQChr14g0437441 Helianthus annuus HOM05D004803 ORTHO05D005653 2.3e-13 78.6 50 70.0
Pp3c14_20040 Physcomitrium patens HOM05D004803 ORTHO05D005653 2.3e-13 78.6 47 74.5
Medtr3g055500 Medicago truncatula HOM05D004803 ORTHO05D005653 3.0e-13 78.2 73 54.8
PGSC0003DMG402013687 Solanum tuberosum HOM05D004803 ORTHO05D005653 3.0e-13 78.2 45 73.3
DCAR_019792 Daucus carota HOM05D004803 ORTHO05D005653 4.0e-13 77.8 45 77.8
Phvul.002G303100 Phaseolus vulgaris HOM05D004803 ORTHO05D005653 4.0e-13 77.8 45 73.3
AUR62001322 Chenopodium quinoa HOM05D004803 ORTHO05D005653 5.2e-13 77.4 46 76.1
AUR62025705 Chenopodium quinoa HOM05D004803 ORTHO05D005653 5.2e-13 77.4 46 73.9
Solyc05g047390.1 Solanum lycopersicum HOM05D004803 ORTHO05D005653 5.2e-13 77.4 45 73.3
Sopen05g027700 Solanum pennellii HOM05D004803 ORTHO05D005653 5.2e-13 77.4 45 73.3
TPR.G25472 Trifolium pratense HOM05D004803 ORTHO05D005653 5.2e-13 77.4 50 70.0
Os01g0626300 Oryza sativa ssp. japonica HOM05D004803 ORTHO05D005653 8.8e-13 76.6 48 68.8
MD15G1094200 Malus domestica HOM05D004803 ORTHO05D005653 1.2e-12 76.3 50 68.0
Cc00_g00470 Coffea canephora HOM05D004803 ORTHO05D005653 1.5e-12 75.9 50 68.0
Hma1.2p1_0418F.1_g149310 Hydrangea macrophylla HOM05D004803 ORTHO05D005653 1.5e-12 75.9 45 71.1
Psat7g021680 Pisum sativum HOM05D004803 ORTHO05D005653 1.5e-12 75.9 50 66.0
Eucgr.H00014 Eucalyptus grandis HOM05D004803 ORTHO05D005653 2.6e-12 75.1 45 64.4
Ah.08g217890 Amaranthus hybridus HOM05D004803 ORTHO05D005653 3.4e-12 74.7 43 76.7
Os01g0732000 Oryza sativa ssp. japonica HOM05D004803 ORTHO05D005653 4.4e-12 74.3 47 66.0
SMO167G0035 Selaginella moellendorffii HOM05D004803 ORTHO05D005653 4.4e-12 74.3 46 67.4
Lsat_1_v5_gn_7_59661 Lactuca sativa HOM05D004803 ORTHO05D005653 5.7e-12 73.9 50 64.0
Medtr3g061970 Medicago truncatula HOM05D004803 ORTHO05D005653 7.5e-12 73.6 49 67.3
Os05g0583400 Oryza sativa ssp. japonica HOM05D004803 ORTHO05D005653 7.5e-12 73.6 45 68.9
Mapoly0024s0138 Marchantia polymorpha HOM05D004803 ORTHO05D005653 8.3e-11 70.1 45 68.9
CBR_g29720 Chara braunii HOM05D004803 ORTHO05D005653 1.4e-10 69.3 44 65.9
Nn8g40644 Nelumbo nucifera HOM05D004803 ORTHO05D005653 1.8e-10 68.9 48 60.4
CBR_g29719 Chara braunii HOM05D004803 ORTHO05D005653 1.6e-09 65.9 42 61.9
Nn8g41089 Nelumbo nucifera HOM05D004803 ORTHO05D005653 2.7e-09 65.1 38 65.8
MD06G1130200 Malus domestica HOM05D004803 ORTHO05D005653 1.7e-08 62.4 40 67.5
MD12G1085900 Malus domestica HOM05D004803 ORTHO05D005653 5.0e-08 60.8 40 65.0
Nn8g40643 Nelumbo nucifera HOM05D004803 ORTHO05D005653 2.5e-07 58.5 35 71.4
MBI16_g37211_MAGBIO Magnolia biondii HOM05D004803 ORTHO05D005653 2.7e-06 55.1 43 60.5
Sed0005262 Sechium edule HOM05D004803 ORTHO05D005653 4.7e-06 54.3 33 69.7


User provided reference genes

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