Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp7g00270 Schrenkiella parvula HOM05D005006 ORTHO05D005903 8.3e-132 473.8 252 100.0
A07p20950 Brassica napus HOM05D005006 ORTHO05D005903 5.6e-96 354.8 289 72.3
C06p20240 Brassica napus HOM05D005006 ORTHO05D005903 5.6e-96 354.8 288 73.3
BolC6t37205H Brassica oleracea HOM05D005006 ORTHO05D005903 5.6e-96 354.8 288 73.3
BraA07t29781Z Brassica rapa HOM05D005006 ORTHO05D005903 2.1e-95 352.8 288 72.2
BcaC08g44558 Brassica carinata HOM05D005006 ORTHO05D005903 9.0e-94 347.4 288 71.9
BcaB02g07876 Brassica carinata HOM05D005006 ORTHO05D005903 2.1e-90 336.3 291 70.4
AL7G47430 Arabidopsis lyrata HOM05D005006 ORTHO05D005903 4.6e-82 308.5 296 62.8
CARHR212760 Cardamine hirsuta HOM05D005006 ORTHO05D005903 5.7e-80 301.6 293 63.1
AT5G41810 Arabidopsis thaliana HOM05D005006 ORTHO05D005903 1.8e-78 296.6 295 62.4
Carub.0007s3356 Capsella rubella HOM05D005006 ORTHO05D005903 1.3e-52 210.7 202 64.9
THA.LOC104809339 Tarenaya hassleriana HOM05D005006 ORTHO05D005903 3.2e-43 179.5 269 47.6
Aa31LG9G320 Aethionema arabicum HOM05D005006 ORTHO05D005903 6.8e-41 171.8 252 47.6
Thhalv10023644m.g Eutrema salsugineum HOM05D005006 ORTHO05D005903 4.5e-37 159.1 290 46.2
Sp2g00420 Schrenkiella parvula HOM05D005006 ORTHO05D005903 7.7e-37 158.3 283 44.5
BcaC04g22629 Brassica carinata HOM05D005006 ORTHO05D005903 1.3e-36 157.5 288 45.5
C09p17190 Brassica napus HOM05D005006 ORTHO05D005903 8.6e-36 154.8 287 45.3
BolC9t54617H Brassica oleracea HOM05D005006 ORTHO05D005903 2.5e-35 153.3 291 44.7
BraA09t37075Z Brassica rapa HOM05D005006 ORTHO05D005903 6.1e-34 148.7 205 52.2
BcaB07g31512 Brassica carinata HOM05D005006 ORTHO05D005903 1.0e-33 147.9 284 45.8
A09p14260 Brassica napus HOM05D005006 ORTHO05D005903 1.8e-33 147.1 272 45.6
Carub.0002s0046 Capsella rubella HOM05D005006 ORTHO05D005903 4.0e-33 146.0 197 51.3
FAN13G1208 Fragaria x ananassa HOM05D005006 ORTHO05D005903 1.5e-32 144.1 205 46.8
FAN18G0263 Fragaria x ananassa HOM05D005006 ORTHO05D005903 1.5e-32 144.1 205 46.8
FAN18G2980 Fragaria x ananassa HOM05D005006 ORTHO05D005903 7.5e-32 141.7 205 46.3
QL02p031286 Quercus lobata HOM05D005006 ORTHO05D005903 9.8e-32 141.4 178 48.9
Eucgr.D01714 Eucalyptus grandis HOM05D005006 ORTHO05D005903 1.7e-31 140.6 183 51.4
FvH4_5g04150 Fragaria vesca HOM05D005006 ORTHO05D005903 1.7e-31 140.6 210 45.7
AL2G10550 Arabidopsis lyrata HOM05D005006 ORTHO05D005903 3.7e-31 139.4 284 42.3
CANSAT21G0143 Cannabis sativa HOM05D005006 ORTHO05D005903 3.7e-31 139.4 189 50.8
Solyc08g082090.1 Solanum lycopersicum HOM05D005006 ORTHO05D005903 4.1e-30 136.0 161 52.2
Sopen08g030380 Solanum pennellii HOM05D005006 ORTHO05D005903 4.1e-30 136.0 161 52.2
PGSC0003DMG400012296 Solanum tuberosum HOM05D005006 ORTHO05D005903 4.1e-30 136.0 161 51.6
Glyma.08G021800 Glycine max HOM05D005006 ORTHO05D005903 5.4e-30 135.6 170 51.8
MD14G1122100 Malus domestica HOM05D005006 ORTHO05D005903 5.4e-30 135.6 220 45.9
RcHm_v2.0_Chr7g0195351 Rosa chinensis HOM05D005006 ORTHO05D005903 9.2e-30 134.8 174 50.0
Phvul.002G296900 Phaseolus vulgaris HOM05D005006 ORTHO05D005903 1.2e-29 134.4 176 51.7
PGR031G0908 Punica granatum HOM05D005006 ORTHO05D005903 1.6e-29 134.0 168 48.8
Prupe.5G116000 Prunus persica HOM05D005006 ORTHO05D005903 2.7e-29 133.3 190 46.3
TWI15G0537 Tripterygium wilfordii HOM05D005006 ORTHO05D005903 3.5e-29 132.9 183 48.6
Gohir.D08G132000 Gossypium hirsutum HOM05D005006 ORTHO05D005903 7.8e-29 131.7 172 51.7
Gorai.004G134900 Gossypium raimondii HOM05D005006 ORTHO05D005903 7.8e-29 131.7 172 51.7
AT1G64340 Arabidopsis thaliana HOM05D005006 ORTHO05D005903 2.9e-28 129.8 165 53.9
Glyma.05G215700 Glycine max HOM05D005006 ORTHO05D005903 2.9e-28 129.8 167 49.1
Gohir.A08G085100 Gossypium hirsutum HOM05D005006 ORTHO05D005903 2.9e-28 129.8 171 52.0
VMungo0251G1458 Vigna mungo HOM05D005006 ORTHO05D005903 2.9e-28 129.8 193 47.7
Potri.001G093500 Populus trichocarpa HOM05D005006 ORTHO05D005903 3.9e-28 129.4 160 51.2
Psat0s4474g0040 Pisum sativum HOM05D005006 ORTHO05D005903 8.6e-28 128.3 166 48.2
Glyma.11G018400 Glycine max HOM05D005006 ORTHO05D005903 1.9e-27 127.1 168 50.6
FAN04G1712 Fragaria x ananassa HOM05D005006 ORTHO05D005903 3.3e-27 126.3 196 43.9
FAN04G3134 Fragaria x ananassa HOM05D005006 ORTHO05D005903 3.3e-27 126.3 196 43.9
Haze_08652 Corylus avellana HOM05D005006 ORTHO05D005903 4.3e-27 125.9 177 47.5
Thecc.03G294000 Theobroma cacao HOM05D005006 ORTHO05D005903 5.6e-27 125.6 164 53.0
Haze_08651 Corylus avellana HOM05D005006 ORTHO05D005903 9.5e-27 124.8 177 46.9
Ciclev10022492m.g Citrus clementina HOM05D005006 ORTHO05D005903 1.2e-26 124.4 172 52.3
MD06G1103200 Malus domestica HOM05D005006 ORTHO05D005903 1.2e-26 124.4 218 43.6
Duzib084G0720 Durio zibethinus HOM05D005006 ORTHO05D005903 1.6e-26 124.0 165 50.3
Glyma.01G224600 Glycine max HOM05D005006 ORTHO05D005903 2.1e-26 123.6 170 50.6
Medtr5g009490 Medicago truncatula HOM05D005006 ORTHO05D005903 2.1e-26 123.6 184 46.7
Aqoxy5G04131 Aquilegia oxysepala HOM05D005006 ORTHO05D005903 3.6e-26 122.9 170 47.1
Manes.02G011900 Manihot esculenta HOM05D005006 ORTHO05D005903 3.6e-26 122.9 180 49.4
CiPaw.11G123200 Carya illinoinensis HOM05D005006 ORTHO05D005903 4.7e-26 122.5 180 47.2
COL.COLO4_21708 Corchorus olitorius HOM05D005006 ORTHO05D005903 4.7e-26 122.5 224 42.4
Dinv37546 Davidia involucrata HOM05D005006 ORTHO05D005903 8.0e-26 121.7 174 47.7
Duzib068G0822 Durio zibethinus HOM05D005006 ORTHO05D005903 1.0e-25 121.3 164 50.6
Nitab4.5_0007099g0020 Nicotiana tabacum HOM05D005006 ORTHO05D005903 1.4e-25 120.9 158 48.1
Cfa012825 Carpinus fangiana HOM05D005006 ORTHO05D005903 4.0e-25 119.4 171 48.0
MELO3C005742.2 Cucumis melo HOM05D005006 ORTHO05D005903 5.2e-25 119.0 171 50.3
LjContig00312_ERROPOS870357g0014674 Lotus japonicus HOM05D005006 ORTHO05D005903 1.5e-24 117.5 175 48.6
TWI81G0332 Tripterygium wilfordii HOM05D005006 ORTHO05D005903 1.5e-24 117.5 180 46.1
Atru.chr9.2028 Acer truncatum HOM05D005006 ORTHO05D005903 2.6e-24 116.7 173 48.0
Atru.chr9.2036 Acer truncatum HOM05D005006 ORTHO05D005903 2.6e-24 116.7 173 48.0
Sed0010968 Sechium edule HOM05D005006 ORTHO05D005903 4.4e-24 115.9 179 48.6
ClCG01G001990 Citrullus lanatus HOM05D005006 ORTHO05D005903 5.8e-24 115.5 166 48.8
Cc08_g15850 Coffea canephora HOM05D005006 ORTHO05D005903 5.8e-24 115.5 216 42.1
AUR62010816 Chenopodium quinoa HOM05D005006 ORTHO05D005903 7.5e-24 115.2 208 41.3
CsaV3_5G002120 Cucumis sativus L. HOM05D005006 ORTHO05D005903 7.5e-24 115.2 170 47.6
Lj4g0012980 Lotus japonicus HOM05D005006 ORTHO05D005903 3.7e-23 112.8 182 46.7
Ca_17490_v3 Cicer arietinum L. HOM05D005006 ORTHO05D005903 4.9e-23 112.5 176 45.5
Sc22g0005120 Simmondsia chinensis HOM05D005006 ORTHO05D005903 4.9e-23 112.5 163 47.2
TPR.G6668 Trifolium pratense HOM05D005006 ORTHO05D005903 4.9e-23 112.5 185 45.4
TAR629G3139 Trochodendron aralioides HOM05D005006 ORTHO05D005903 4.9e-23 112.5 181 43.1
Actinidia01391 Actinidia chinensis HOM05D005006 ORTHO05D005903 1.1e-22 111.3 178 42.7
Hma1.2p1_0359F.1_g135340 Hydrangea macrophylla HOM05D005006 ORTHO05D005903 1.9e-22 110.5 187 46.0
MSTRG.13880 Avicennia marina HOM05D005006 ORTHO05D005903 3.2e-22 109.8 156 46.2
Medtr8g099340 Medicago truncatula HOM05D005006 ORTHO05D005903 3.2e-22 109.8 177 43.5
ClCG07G014930 Citrullus lanatus HOM05D005006 ORTHO05D005903 4.1e-22 109.4 186 46.8
ClCG10G009270 Citrullus lanatus HOM05D005006 ORTHO05D005903 4.1e-22 109.4 186 46.8
Atru.chr2.764 Acer truncatum HOM05D005006 ORTHO05D005903 9.2e-22 108.2 171 45.6
MELO3C016304.2 Cucumis melo HOM05D005006 ORTHO05D005903 9.2e-22 108.2 183 45.4
Sabra01G0069400 Salix brachista HOM05D000089 ORTHO05D003403 3.5e-21 106.3 165 46.1
Oeu061095.1 Olea europaea HOM05D005006 ORTHO05D005903 4.6e-21 105.9 163 44.8
Cpa.g.sc775.1 Carica papaya HOM05D005006 ORTHO05D005903 6.0e-21 105.5 204 40.7
Manes.01G045300 Manihot esculenta HOM05D005006 ORTHO05D005903 1.0e-20 104.8 193 41.5
Psat7g027080 Pisum sativum HOM05D005006 ORTHO05D005903 1.0e-20 104.8 170 44.7
VMungo1215G3249 Vigna mungo HOM05D005266 ORTHO05D006416 3.0e-20 103.2 161 44.7
Rhsim07G0083400 Rhododendron simsii HOM05D005006 ORTHO05D005903 3.9e-20 102.8 184 44.0
ECA233G6185 Erigeron canadensis HOM05D005006 ORTHO05D005903 6.6e-20 102.1 186 41.4
ECA240G3705 Erigeron canadensis HOM05D005006 ORTHO05D005903 6.6e-20 102.1 168 47.0
HanXRQChr03g0085171 Helianthus annuus HOM05D005006 ORTHO05D005903 1.1e-19 101.3 171 43.3
DCAR_027715 Daucus carota HOM05D005006 ORTHO05D005903 1.9e-19 100.5 174 46.6
Lsat_1_v5_gn_6_85661 Lactuca sativa HOM05D005006 ORTHO05D005903 3.3e-19 99.8 175 41.1
Nn1g01823 Nelumbo nucifera HOM05D005006 ORTHO05D005903 3.3e-19 99.8 164 43.9
Sed0013874 Sechium edule HOM05D005006 ORTHO05D005903 4.3e-19 99.4 210 39.5
CsaV3_4G006460 Cucumis sativus L. HOM05D005006 ORTHO05D005903 5.6e-19 99.0 178 42.1
Lalb_Chr05g0224201 Lupinus albus HOM05D005006 ORTHO05D005903 5.6e-19 99.0 180 45.0
SGA_v2.0_scaffold111G31421 Striga asiatica HOM05D005006 ORTHO05D005903 1.2e-18 97.8 176 37.5
CSS0014692 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 1.6e-18 97.4 184 41.8
HanXRQChr07g0191041 Helianthus annuus HOM05D005006 ORTHO05D005903 1.6e-18 97.4 174 41.4
Rhsim02G0241500 Rhododendron simsii HOM05D005006 ORTHO05D005903 1.6e-18 97.4 177 40.7
CSS0022093 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 2.1e-18 97.1 190 38.4
Peaxi162Scf00074g01119 Petunia axillaris HOM05D005006 ORTHO05D005903 2.8e-18 96.7 144 47.2
Lsat_1_v5_gn_6_11781 Lactuca sativa HOM05D005006 ORTHO05D005903 8.0e-18 95.1 187 39.0
MBI07_g24340_MAGBIO Magnolia biondii HOM05D005006 ORTHO05D005903 8.0e-18 95.1 174 40.2
Sed0017945 Sechium edule HOM05D005006 ORTHO05D005903 3.1e-17 93.2 174 40.8
Sc01g0010170 Simmondsia chinensis HOM05D005006 ORTHO05D005903 1.1e-14 84.7 181 35.9
Peaxi162Scf00117g00128 Petunia axillaris HOM05D005006 ORTHO05D005903 2.1e-13 80.5 153 39.9
Manes.02G012001 Manihot esculenta HOM05D005006 ORTHO05D005903 8.6e-12 75.1 177 36.7
ClCG11G005390 Citrullus lanatus HOM05D000189 ORTHO05D006628 3.3e-11 73.2 146 45.2
PGR042G1559 Punica granatum HOM05D005006 ORTHO05D005903 5.6e-11 72.4 181 34.3
Dinv38852 Davidia involucrata HOM05D005006 ORTHO05D005903 1.2e-10 71.2 105 49.5
Phvul.002G163200 Phaseolus vulgaris HOM05D005006 ORTHO05D005903 1.2e-10 71.2 120 41.7
MBI06_g32753_MAGBIO Magnolia biondii HOM05D005006 ORTHO05D005903 1.6e-10 70.9 178 36.5
PSO724G0798 Papaver somniferum HOM05D005006 ORTHO05D005903 4.7e-10 69.3 183 36.1
PSO724G1125 Papaver somniferum HOM05D005006 ORTHO05D005903 1.4e-09 67.8 183 35.5
ClCG01G011510 Citrullus lanatus HOM05D005006 ORTHO05D005903 1.8e-09 67.4 102 47.1
ClCG05G010200 Citrullus lanatus HOM05D005006 ORTHO05D005903 1.8e-09 67.4 102 47.1
ClCG07G009600 Citrullus lanatus HOM05D005006 ORTHO05D005903 1.8e-09 67.4 102 47.1
TPR.G3451 Trifolium pratense HOM05D006501 ORTHO05D008241 5.2e-09 65.9 81 50.6
PSO729G0067 Papaver somniferum HOM05D005006 ORTHO05D005903 1.5e-08 64.3 179 31.8
Gohir.D12G236200 Gossypium hirsutum HOM05D005006 ORTHO05D005903 2.6e-08 63.5 106 46.2
Gorai.008G253000 Gossypium raimondii HOM05D005006 ORTHO05D005903 2.6e-08 63.5 106 46.2
Gohir.A11G024100 Gossypium hirsutum HOM05D005006 ORTHO05D005903 4.4e-08 62.8 111 38.7
Gohir.A12G235100 Gossypium hirsutum HOM05D005006 ORTHO05D005903 5.8e-08 62.4 121 43.0
ATR0589G111 Amborella trichopoda HOM05D005006 ORTHO05D005903 1.7e-07 60.8 102 41.2
CSS0044305 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 2.2e-07 60.5 56 62.5
PSO724G0350 Papaver somniferum HOM05D005006 ORTHO05D005903 2.2e-07 60.5 121 42.1
Nn3g19068 Nelumbo nucifera HOM05D005006 ORTHO05D005903 4.9e-07 59.3 87 49.4
EL10Ac5g12894 Beta vulgaris HOM05D005006 ORTHO05D005903 6.4e-07 58.9 113 38.1
Gohir.D03G082400 Gossypium hirsutum HOM05D005006 ORTHO05D005903 6.4e-07 58.9 142 40.1
Gorai.003G081300 Gossypium raimondii HOM05D005006 ORTHO05D005903 6.4e-07 58.9 142 40.1
Gohir.A02G102000 Gossypium hirsutum HOM05D005006 ORTHO05D005903 1.1e-06 58.2 108 45.4
Zm00001eb382950 Zea mays HOM05D005006 ORTHO05D005903 1.1e-06 58.2 160 32.5
SGA_v2.0_scaffold173G39083 Striga asiatica HOM05D005006 ORTHO05D005903 1.4e-06 57.8 48 60.4
TAR636G0983 Trochodendron aralioides HOM05D000337 ORTHO05D000297 1.4e-06 57.8 58 55.2
Os06g0525200 Oryza sativa ssp. japonica HOM05D005006 ORTHO05D005903 9.2e-06 55.1 166 31.9


User provided reference genes

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