Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp7g00230 Schrenkiella parvula HOM05D004439 ORTHO05D005670 2.1e-288 995.0 484 100.0
Thhalv10027750m.g Eutrema salsugineum HOM05D004439 ORTHO05D005670 3.3e-254 881.3 461 92.4
BcaB02g07872 Brassica carinata HOM05D004439 ORTHO05D005670 2.6e-246 855.1 462 90.7
BcaC02g08908 Brassica carinata HOM05D004439 ORTHO05D005670 3.7e-245 851.3 460 89.6
A04p15000 Brassica napus HOM05D004439 ORTHO05D005670 6.9e-244 847.0 462 89.0
C04p49290 Brassica napus HOM05D004439 ORTHO05D005670 1.2e-243 846.3 462 89.2
BolC4t26514H Brassica oleracea HOM05D004439 ORTHO05D005670 1.2e-243 846.3 462 89.2
CARHR212680 Cardamine hirsuta HOM05D004439 ORTHO05D005670 1.2e-243 846.3 460 88.7
BraA04t17145Z Brassica rapa HOM05D004439 ORTHO05D005670 5.0e-242 840.9 462 88.3
C06p20300 Brassica napus HOM05D004439 ORTHO05D005670 1.9e-241 839.0 462 89.0
AL7G47340 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 4.2e-241 837.8 459 88.0
AT5G41880 Arabidopsis thaliana HOM05D004439 ORTHO05D005670 1.8e-239 832.4 459 87.6
Carub.0007s3348 Capsella rubella HOM05D004439 ORTHO05D005670 7.4e-238 827.0 459 87.6
BcaB06g27677 Brassica carinata HOM05D004439 ORTHO05D005670 1.7e-226 789.3 472 82.2
A07p20990 Brassica napus HOM05D004439 ORTHO05D005670 3.0e-223 778.5 490 80.2
THA.LOC104809335 Tarenaya hassleriana HOM05D004439 ORTHO05D005670 1.2e-222 776.5 473 79.5
BcaC08g44563 Brassica carinata HOM05D004439 ORTHO05D005670 1.1e-212 743.4 403 89.8
Aa31LG9G280 Aethionema arabicum HOM05D004439 ORTHO05D005670 4.3e-209 731.5 421 82.9
BcaNung06856 Brassica carinata HOM05D004439 ORTHO05D005670 7.3e-193 677.6 482 75.1
Thecc.03G296500 Theobroma cacao HOM05D004439 ORTHO05D005670 1.4e-191 673.3 459 68.6
Duzib205G1996 Durio zibethinus HOM05D004439 ORTHO05D005670 3.1e-191 672.2 459 68.4
Gohir.D12G237200 Gossypium hirsutum HOM05D004439 ORTHO05D005670 5.2e-191 671.4 459 67.8
EL10Ac5g12905 Beta vulgaris HOM05D004439 ORTHO05D005670 1.2e-190 670.2 459 67.5
Cfa023584 Carpinus fangiana HOM05D004439 ORTHO05D005670 1.2e-190 670.2 461 68.5
COL.COLO4_10686 Corchorus olitorius HOM05D004439 ORTHO05D005670 1.2e-190 670.2 472 67.4
Gorai.008G253800 Gossypium raimondii HOM05D004439 ORTHO05D005670 2.2e-189 666.0 459 67.3
Manes.11G128600 Manihot esculenta HOM05D004439 ORTHO05D005670 2.9e-189 665.6 455 68.4
QL02p030851 Quercus lobata HOM05D004439 ORTHO05D005670 4.9e-189 664.8 460 68.0
Prupe.5G117700 Prunus persica HOM05D004439 ORTHO05D005670 9.2e-188 660.6 461 67.7
CANSAT21G0267 Cannabis sativa HOM05D004439 ORTHO05D005670 1.6e-187 659.8 459 67.3
Potri.003G104700 Populus trichocarpa HOM05D004439 ORTHO05D005670 1.6e-187 659.8 459 68.4
TAR629G1063 Trochodendron aralioides HOM05D004439 ORTHO05D005670 1.6e-187 659.8 461 66.4
Duzib084G1213 Durio zibethinus HOM05D004439 ORTHO05D005670 2.1e-187 659.4 466 67.0
TWI81G0104 Tripterygium wilfordii HOM05D004439 ORTHO05D005670 2.1e-187 659.4 459 67.3
CSS0017274 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 2.3e-186 656.0 459 66.0
CSS0021285 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 2.3e-186 656.0 459 66.0
Ciclev10020115m.g Citrus clementina HOM05D004439 ORTHO05D005670 2.3e-186 656.0 459 67.1
Sopen08g030490 Solanum pennellii HOM05D004439 ORTHO05D005670 3.9e-186 655.2 459 66.2
Dinv38840 Davidia involucrata HOM05D004439 ORTHO05D005670 5.1e-186 654.8 459 66.7
CiPaw.11G122200 Carya illinoinensis HOM05D004439 ORTHO05D005670 6.6e-186 654.4 461 66.8
MBI07_g27257_MAGBIO Magnolia biondii HOM05D004439 ORTHO05D005670 1.1e-185 653.7 461 67.0
Solyc08g082200.3 Solanum lycopersicum HOM05D004439 ORTHO05D005670 9.5e-185 650.6 459 65.6
GSVIVG01019518001 Vitis vinifera HOM05D004439 ORTHO05D005670 2.1e-184 649.4 430 69.3
Peaxi162Scf00074g01028 Petunia axillaris HOM05D004439 ORTHO05D005670 8.1e-184 647.5 459 66.0
Nn2g14269 Nelumbo nucifera HOM05D004439 ORTHO05D005670 2.4e-183 646.0 446 67.3
vmacro13901 Vaccinium macrocarpon HOM05D004439 ORTHO05D005670 6.8e-183 644.4 459 65.1
Atru.chr9.2010 Acer truncatum HOM05D004439 ORTHO05D005670 3.4e-182 642.1 459 66.2
Sc01g0010250 Simmondsia chinensis HOM05D004439 ORTHO05D005670 5.8e-182 641.3 459 64.3
CAN.G532.113 Capsicum annuum HOM05D004439 ORTHO05D005670 7.6e-182 641.0 459 64.9
MSTRG.1809 Avicennia marina HOM05D004439 ORTHO05D005670 9.9e-182 640.6 459 66.0
MD06G1105400 Malus domestica HOM05D004439 ORTHO05D005670 3.8e-181 638.6 432 69.0
Eucgr.E00854 Eucalyptus grandis HOM05D004439 ORTHO05D005670 1.4e-180 636.7 462 63.9
Lj1g0018659 Lotus japonicus HOM05D004439 ORTHO05D005670 1.4e-180 636.7 437 67.5
Migut.A00663 Erythranthe guttata HOM05D004439 ORTHO05D005670 3.5e-179 632.1 459 66.0
Glyma.02G286600 Glycine max HOM05D004439 ORTHO05D005670 3.5e-179 632.1 433 67.9
Hund11394 Selenicereus undatus HOM05D004439 ORTHO05D005670 5.1e-178 628.2 459 65.1
Phvul.009G207100 Phaseolus vulgaris HOM05D004439 ORTHO05D005670 8.7e-178 627.5 432 66.7
VMungo0647G0731 Vigna mungo HOM05D004439 ORTHO05D005670 1.1e-177 627.1 432 67.1
Psat5g147560 Pisum sativum HOM05D004439 ORTHO05D005670 4.3e-177 625.2 432 67.8
Lalb_Chr16g0376971 Lupinus albus HOM05D004439 ORTHO05D005670 1.6e-176 623.2 449 65.5
arahy.Tifrunner.gnm1.ann1.X9M6Z3 Arachis hypogaea HOM05D004439 ORTHO05D005670 3.6e-176 622.1 462 63.0
arahy.Tifrunner.gnm1.ann1.URL0E3 Arachis hypogaea HOM05D004439 ORTHO05D005670 4.7e-176 621.7 462 62.8
Medtr3g062490 Medicago truncatula HOM05D004439 ORTHO05D005670 6.2e-176 621.3 432 67.6
CsaV3_5G039570 Cucumis sativus L. HOM05D004439 ORTHO05D005670 8.1e-176 620.9 455 65.5
arahy.Tifrunner.gnm1.ann1.FA9VAL Arachis hypogaea HOM05D004439 ORTHO05D005670 1.1e-175 620.5 462 62.8
Ca_15083_v3 Cicer arietinum L. HOM05D004439 ORTHO05D005670 1.4e-175 620.2 432 66.9
Nitab4.5_0001231g0030 Nicotiana tabacum HOM05D004439 ORTHO05D005670 1.8e-175 619.8 465 64.3
SalBow1G1193 Salvia bowleyana HOM05D004439 ORTHO05D005670 1.8e-175 619.8 457 64.1
Cc08_g15970 Coffea canephora HOM05D004439 ORTHO05D005670 4.0e-175 618.6 459 63.4
Sed0005226 Sechium edule HOM05D004439 ORTHO05D005670 5.2e-175 618.2 459 64.7
RcHm_v2.0_Chr7g0195041 Rosa chinensis HOM05D004439 ORTHO05D005670 9.0e-175 617.5 444 66.4
FvH4_5g04460 Fragaria vesca HOM05D004439 ORTHO05D005670 1.5e-174 616.7 424 68.2
Aqoxy5G04196 Aquilegia oxysepala HOM05D004439 ORTHO05D005670 2.9e-173 612.5 459 63.0
ATR0320G020 Amborella trichopoda HOM05D004439 ORTHO05D005670 6.4e-173 611.3 450 64.2
AUR62019828 Chenopodium quinoa HOM05D004439 ORTHO05D005670 8.4e-173 610.9 482 61.2
HanXRQChr06g0184201 Helianthus annuus HOM05D004439 ORTHO05D005670 1.1e-172 610.5 459 63.6
FAN13G1146 Fragaria x ananassa HOM05D004439 ORTHO05D005670 1.9e-172 609.8 426 68.1
DCAR_006321 Daucus carota HOM05D004439 ORTHO05D005670 5.4e-172 608.2 455 64.8
FAN18G4375 Fragaria x ananassa HOM05D004439 ORTHO05D005670 9.3e-172 607.4 468 63.2
vmacro05785 Vaccinium macrocarpon HOM05D004439 ORTHO05D005670 9.3e-172 607.4 446 63.7
Lsat_1_v5_gn_6_12240 Lactuca sativa HOM05D004439 ORTHO05D005670 2.7e-171 605.9 439 65.8
Cpa.g.sc79.44 Carica papaya HOM05D004439 ORTHO05D005670 3.5e-171 605.5 440 67.3
FAN18G2355 Fragaria x ananassa HOM05D004439 ORTHO05D005670 6.0e-171 604.7 469 63.1
HanXRQChr05g0138501 Helianthus annuus HOM05D004439 ORTHO05D005670 6.0e-171 604.7 459 63.2
Rhsim07G0082800 Rhododendron simsii HOM05D004439 ORTHO05D005670 6.0e-171 604.7 442 63.6
AUR62010830 Chenopodium quinoa HOM05D004439 ORTHO05D005670 1.3e-170 603.6 459 62.5
Ca_15072_v3 Cicer arietinum L. HOM05D004439 ORTHO05D005670 2.3e-170 602.8 458 62.7
arahy.Tifrunner.gnm1.ann1.B833UN Arachis hypogaea HOM05D004439 ORTHO05D005670 3.9e-170 602.1 474 60.5
FAN04G2433 Fragaria x ananassa HOM05D004439 ORTHO05D005670 6.6e-170 601.3 446 64.6
FAN08G0613 Fragaria x ananassa HOM05D004439 ORTHO05D005670 1.9e-169 599.7 447 64.9
ECA233G4302 Erigeron canadensis HOM05D004439 ORTHO05D005670 7.3e-169 597.8 452 64.4
unitig_92.g28124 Utricularia gibba HOM05D004439 ORTHO05D005670 1.1e-167 594.0 430 64.7
Aqoxy1G01152 Aquilegia oxysepala HOM05D004439 ORTHO05D005670 2.1e-163 579.7 407 67.1
Lj8C209T4 Lonicera japonica HOM05D004439 ORTHO05D005670 3.5e-163 578.9 395 67.6
SGA_v2.0_scaffold305G47954 Striga asiatica HOM05D004439 ORTHO05D005670 8.7e-162 574.3 497 58.4
PSO384G1647 Papaver somniferum HOM05D004439 ORTHO05D005670 1.1e-161 573.9 466 61.8
CDE02G4298 Ceratophyllum demersum HOM05D004439 ORTHO05D005670 1.9e-161 573.2 451 61.6
Ah.12g052480 Amaranthus hybridus HOM05D004439 ORTHO05D005670 2.5e-161 572.8 469 59.5
Sabra03G0071700 Salix brachista HOM05D004439 ORTHO05D005670 9.6e-161 570.9 490 58.8
PSO339G0633 Papaver somniferum HOM05D004439 ORTHO05D005670 1.3e-160 570.5 467 62.1
Mapoly0061s0010 Marchantia polymorpha HOM05D004439 ORTHO05D005670 1.4e-159 567.0 441 59.4
Actinidia27332 Actinidia chinensis HOM05D004439 ORTHO05D005670 3.1e-159 565.8 459 61.2
HPP92_001766 Vanilla planifolia HOM05D004439 ORTHO05D005670 4.9e-157 558.5 454 59.5
Gohir.A12G236000 Gossypium hirsutum HOM05D004439 ORTHO05D005670 2.1e-155 553.1 369 68.8
HPP92_001588 Vanilla planifolia HOM05D004439 ORTHO05D005670 2.3e-154 549.7 402 63.7
Pp3c9_1070 Physcomitrium patens HOM05D004439 ORTHO05D005670 3.4e-150 535.8 431 57.1
Oeu063530.1 Olea europaea HOM05D004439 ORTHO05D005670 8.4e-149 531.2 396 63.4
Lj8A194T41 Lonicera japonica HOM05D004439 ORTHO05D005670 1.6e-147 526.9 385 64.4
CBR_g51004 Chara braunii HOM05D004439 ORTHO05D005670 4.6e-147 525.4 425 56.0
DCAR_029884 Daucus carota HOM05D004439 ORTHO05D005670 1.1e-145 520.8 381 66.7
CBR_g30932 Chara braunii HOM05D004439 ORTHO05D005670 9.7e-145 517.7 428 55.6
Nitab4.5_0008661g0010 Nicotiana tabacum HOM05D004439 ORTHO05D005670 1.1e-143 514.2 444 58.6
AagrBONN_evm.TU.Sc2ySwM_117.2781 Anthoceros agrestis HOM05D004439 ORTHO05D005670 1.5e-142 510.4 441 56.2
Rhsim09G0008900 Rhododendron simsii HOM05D004439 ORTHO05D005670 1.5e-142 510.4 475 55.6
ClCG08G001530 Citrullus lanatus HOM05D004439 ORTHO05D005670 1.6e-139 500.4 538 50.6
Haze_08623 Corylus avellana HOM05D004439 ORTHO05D005670 2.2e-136 490.0 345 66.7
arahy.Tifrunner.gnm1.ann1.4X43I0 Arachis hypogaea HOM05D004439 ORTHO05D005670 8.8e-130 468.0 354 62.1
TPR.G13893 Trifolium pratense HOM05D004439 ORTHO05D005670 1.8e-122 443.7 432 52.3
SMO361G0316 Selaginella moellendorffii HOM05D004439 ORTHO05D005670 1.3e-117 427.6 361 57.9
SMO361G0219 Selaginella moellendorffii HOM05D004439 ORTHO05D005670 3.8e-117 426.0 361 57.6
SHI03128 Sapria himalayana HOM05D004439 ORTHO05D005670 2.0e-113 413.7 486 46.1
Glyma.14G028200 Glycine max HOM05D004439 ORTHO05D005670 2.8e-112 409.8 291 67.4
Zm00001eb346380 Zea mays HOM05D004439 ORTHO05D005670 1.9e-108 397.1 291 63.6
Cre07.g312350 Chlamydomonas reinhardtii HOM05D004439 ORTHO05D005670 1.2e-102 377.9 373 47.5
arahy.Tifrunner.gnm1.ann1.JNH9P6 Arachis hypogaea HOM05D004439 ORTHO05D005670 1.9e-100 370.5 413 49.6
CSS0041217 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 3.3e-100 369.8 465 46.5
Lj2A169G40 Lonicera japonica HOM05D004439 ORTHO05D005670 5.5e-100 369.0 331 56.2
MD14G1127500 Malus domestica HOM05D004439 ORTHO05D005670 6.1e-99 365.5 265 65.3
PRCOL_00003494 Prasinoderma coloniale HOM05D004439 ORTHO05D005670 3.5e-94 349.7 441 42.9
Cfa025390 Carpinus fangiana HOM05D004439 ORTHO05D005670 2.0e-86 323.9 433 40.6
RcHm_v2.0_Chr6g0245381 Rosa chinensis HOM05D004439 ORTHO05D005670 2.6e-81 307.0 207 68.6
RcHm_v2.0_Chr5g0068871 Rosa chinensis HOM05D004439 ORTHO05D005670 2.2e-72 277.3 281 50.9
RcHm_v2.0_Chr6g0245391 Rosa chinensis HOM05D004439 ORTHO05D005670 1.3e-69 268.1 215 61.9
AL3G52130 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 7.8e-62 242.3 257 57.2
AL1G55640 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 2.3e-61 240.7 255 56.9
TPR.G191 Trifolium pratense HOM05D004439 ORTHO05D005670 5.1e-61 239.6 175 65.1
PSO063G0793 Papaver somniferum HOM05D004439 ORTHO05D005670 4.0e-50 203.4 181 58.0
MELO3C027184.2 Cucumis melo HOM05D004439 ORTHO05D005670 1.2e-49 201.8 118 73.7
SEGI_14966 Sequoiadendron giganteum HOM05D004439 ORTHO05D005670 3.4e-49 200.3 216 46.8
AL2G23180 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 1.7e-48 198.0 255 51.0
TPR.G9934 Trifolium pratense HOM05D004439 ORTHO05D005670 9.3e-47 192.2 214 52.8
MELO3C031246.2 Cucumis melo HOM05D004439 ORTHO05D005670 4.8e-35 153.3 157 51.0
PGSC0003DMG400012290 Solanum tuberosum HOM05D004439 ORTHO05D005670 1.4e-34 151.8 234 39.3
MD14G1127600 Malus domestica HOM05D004439 ORTHO05D005670 1.5e-33 148.3 110 65.5
AL1G44430 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 8.4e-32 142.5 85 81.2
Os05g0358200 Oryza sativa ssp. japonica HOM05D004439 ORTHO05D005670 8.4e-32 142.5 107 61.7
TPR.G3794 Trifolium pratense HOM05D004439 ORTHO05D005670 2.5e-31 141.0 99 64.6
TPR.G9939 Trifolium pratense HOM05D004439 ORTHO05D005670 2.5e-31 141.0 201 40.3
SEGI_35904 Sequoiadendron giganteum HOM05D004439 ORTHO05D000007 1.8e-18 98.2 131 41.2
MD06G1072700 Malus domestica HOM05D004439 ORTHO05D005670 6.9e-18 96.3 59 72.9
Lj2A169G39 Lonicera japonica HOM05D004439 ORTHO05D005670 3.4e-17 94.0 91 50.5
TPR.G22107 Trifolium pratense HOM05D004439 ORTHO05D005670 3.8e-16 90.5 70 57.1
Actinidia27324 Actinidia chinensis HOM05D004439 ORTHO05D005670 8.5e-08 62.8 33 78.8
BraA07t29785Z Brassica rapa HOM05D004439 ORTHO05D043038 1.9e-07 61.6 43 72.1
Actinidia22721 Actinidia chinensis HOM05D004439 ORTHO05D057326 3.2e-07 60.8 79 45.6
Actinidia27321 Actinidia chinensis HOM05D004439 ORTHO05D005670 5.5e-07 60.1 42 57.1
BolC6t37210H Brassica oleracea HOM05D004439 ORTHO05D043038 9.4e-07 59.3 43 69.8
Actinidia27323 Actinidia chinensis HOM05D004439 ORTHO05D005670 2.7e-06 57.8 79 43.0


User provided reference genes

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