Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp7g00180 Schrenkiella parvula HOM05D004623 ORTHO05D005100 1.6e-260 902.5 542 100.0
BcaB06g27683 Brassica carinata HOM05D004623 ORTHO05D005100 3.1e-216 755.4 559 83.9
AT5G41950 Arabidopsis thaliana HOM05D004623 ORTHO05D005100 4.9e-214 748.0 589 79.8
BraA04t17152Z Brassica rapa HOM05D003273 ORTHO05D005100 3.2e-213 745.3 561 83.6
Thhalv10027708m.g Eutrema salsugineum HOM05D004623 ORTHO05D005100 5.4e-213 744.6 559 86.6
Carub.0007s3343 Capsella rubella HOM05D004623 ORTHO05D005100 4.8e-209 731.5 553 84.4
CARHR212610 Cardamine hirsuta HOM05D004623 ORTHO05D005100 6.2e-209 731.1 560 82.7
AL7G47270 Arabidopsis lyrata HOM05D004623 ORTHO05D005100 4.0e-208 728.4 552 85.1
BcaC02g08901 Brassica carinata HOM05D004623 ORTHO05D005100 9.0e-208 727.2 557 84.9
BolC4t26520H Brassica oleracea HOM05D004623 ORTHO05D005100 9.0e-208 727.2 557 84.9
C04p49340 Brassica napus HOM05D003273 ORTHO05D005100 8.4e-206 720.7 552 84.8
A04p15110 Brassica napus HOM05D003273 ORTHO05D005100 1.5e-202 709.9 557 83.1
Aa31LG9G240 Aethionema arabicum HOM05D004623 ORTHO05D005100 5.6e-202 708.0 565 77.7
THA.LOC104823625 Tarenaya hassleriana HOM05D004623 ORTHO05D005100 1.1e-186 657.1 538 78.4
Thecc.03G221500 Theobroma cacao HOM05D004623 ORTHO05D005100 9.4e-157 557.8 470 75.7
Cpa.g.sc175.24 Carica papaya HOM05D004623 ORTHO05D005100 9.8e-154 547.7 498 71.9
COL.COLO4_10792 Corchorus olitorius HOM05D004623 ORTHO05D005100 1.6e-151 540.4 456 75.2
Duzib205G1161 Durio zibethinus HOM05D004623 ORTHO05D005100 1.0e-150 537.7 493 66.7
Gohir.A08G110100 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.9e-149 533.5 470 73.8
Gohir.D08G123000 Gossypium hirsutum HOM05D004623 ORTHO05D005100 3.2e-149 532.7 470 73.6
TWI81G0490 Tripterygium wilfordii HOM05D004623 ORTHO05D005100 4.2e-149 532.3 481 71.7
Haze_09171 Corylus avellana HOM05D004623 ORTHO05D005100 2.7e-148 529.6 465 72.9
TWI15G0843 Tripterygium wilfordii HOM05D004623 ORTHO05D005100 1.0e-147 527.7 456 74.6
Cfa011928 Carpinus fangiana HOM05D004623 ORTHO05D005100 1.8e-147 526.9 460 73.5
CiPaw.12G077700 Carya illinoinensis HOM05D004623 ORTHO05D005100 5.2e-147 525.4 490 67.1
CiPaw.11G112800 Carya illinoinensis HOM05D004623 ORTHO05D005100 6.8e-147 525.0 534 65.4
Atru.chr9.1891 Acer truncatum HOM05D004623 ORTHO05D005100 1.7e-145 520.4 432 70.1
Psat6g053240 Pisum sativum HOM05D004623 ORTHO05D005100 1.7e-145 520.4 470 66.8
VMungo0720G2137 Vigna mungo HOM05D004623 ORTHO05D005100 8.3e-145 518.1 535 60.6
RcHm_v2.0_Chr7g0186861 Rosa chinensis HOM05D004623 ORTHO05D005100 2.4e-144 516.5 485 63.9
arahy.Tifrunner.gnm1.ann1.6R22RC Arachis hypogaea HOM05D004623 ORTHO05D005100 3.1e-144 516.2 468 66.2
arahy.Tifrunner.gnm1.ann1.CHU5UJ Arachis hypogaea HOM05D004623 ORTHO05D005100 3.1e-144 516.2 468 70.1
Medtr1g077850 Medicago truncatula HOM05D004623 ORTHO05D005100 4.1e-144 515.8 469 66.7
Gorai.004G129800 Gossypium raimondii HOM05D004623 ORTHO05D005100 9.2e-144 514.6 502 63.3
Lalb_Chr21g0311621 Lupinus albus HOM05D004623 ORTHO05D005100 2.7e-143 513.1 432 69.2
Ca_09948_v3 Cicer arietinum L. HOM05D004623 ORTHO05D005100 3.5e-143 512.7 457 67.2
Phvul.L005101 Phaseolus vulgaris HOM05D004623 ORTHO05D005100 3.5e-143 512.7 431 73.8
Gohir.A09G188600 Gossypium hirsutum HOM05D004623 ORTHO05D005100 4.5e-143 512.3 475 71.6
Dinv12926 Davidia involucrata HOM05D004623 ORTHO05D005100 1.7e-142 510.4 446 73.5
CSS0032200 Camellia sinensis var. sinensis HOM05D004623 ORTHO05D005100 3.8e-142 509.2 501 68.1
Glyma.20G217500 Glycine max HOM05D004623 ORTHO05D005100 3.8e-142 509.2 432 69.9
Aqoxy7G00024 Aquilegia oxysepala HOM05D004623 ORTHO05D005100 5.0e-142 508.8 486 68.1
MD14G1126200 Malus domestica HOM05D004623 ORTHO05D005100 6.6e-142 508.4 452 67.3
Gohir.D09G183500 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.9e-141 506.9 475 70.9
Nn1g00375 Nelumbo nucifera HOM05D004623 ORTHO05D005100 9.5e-141 504.6 489 67.5
Potri.003G146200 Populus trichocarpa HOM05D004623 ORTHO05D005100 1.2e-140 504.2 454 72.2
CANSAT21G1410 Cannabis sativa HOM05D004623 ORTHO05D005100 4.7e-140 502.3 456 70.6
FAN04G2529 Fragaria x ananassa HOM05D004623 ORTHO05D005100 6.1e-140 501.9 465 60.4
TPR.G34807 Trifolium pratense HOM05D004623 ORTHO05D005100 8.0e-140 501.5 451 67.2
PSO063G4918 Papaver somniferum HOM05D004623 ORTHO05D005100 1.0e-139 501.1 481 62.8
FAN08G2217 Fragaria x ananassa HOM05D004623 ORTHO05D005100 1.8e-139 500.4 461 70.1
Eucgr.D01683 Eucalyptus grandis HOM05D004623 ORTHO05D005100 4.0e-139 499.2 483 63.6
CAN.G567.85 Capsicum annuum HOM05D004623 ORTHO05D005100 5.2e-139 498.8 465 69.0
PGR031G2083 Punica granatum HOM05D004623 ORTHO05D005100 6.8e-139 498.4 465 65.8
FAN18G3535 Fragaria x ananassa HOM05D004623 ORTHO05D005100 1.5e-138 497.3 459 69.9
FvH4_5g10960 Fragaria vesca HOM05D004623 ORTHO05D005100 2.6e-138 496.5 459 70.2
FAN13G2046 Fragaria x ananassa HOM05D004623 ORTHO05D005100 4.4e-138 495.7 459 69.7
SGA_v2.0_scaffold127G33962 Striga asiatica HOM05D004623 ORTHO05D005100 4.4e-138 495.7 536 64.4
Cc08_g16710 Coffea canephora HOM05D004623 ORTHO05D005100 7.5e-138 495.0 425 68.0
Nitab4.5_0004251g0030 Nicotiana tabacum HOM05D004623 ORTHO05D005100 1.3e-137 494.2 445 71.0
MSTRG.13716 Avicennia marina HOM05D004623 ORTHO05D005100 2.2e-137 493.4 540 62.4
Gorai.006G205900 Gossypium raimondii HOM05D004623 ORTHO05D005100 2.2e-137 493.4 473 69.8
PSO782G3970 Papaver somniferum HOM05D004623 ORTHO05D005100 2.2e-137 493.4 481 62.4
Nitab4.5_0007063g0040 Nicotiana tabacum HOM05D004623 ORTHO05D005100 3.7e-137 492.7 483 67.1
CsaV3_3G000890 Cucumis sativus L. HOM05D004623 ORTHO05D005100 4.9e-137 492.3 543 63.4
Lj2A157G52 Lonicera japonica HOM05D004623 ORTHO05D005100 4.9e-137 492.3 442 72.2
Ciclev10019829m.g Citrus clementina HOM05D004623 ORTHO05D005100 6.4e-137 491.9 431 73.3
Solyc08g083070.3 Solanum lycopersicum HOM05D004623 ORTHO05D005100 6.4e-137 491.9 455 69.9
Lj5g0020025 Lotus japonicus HOM05D004623 ORTHO05D005100 8.3e-137 491.5 401 71.8
Prupe.5G129200 Prunus persica HOM05D004623 ORTHO05D005100 1.1e-136 491.1 460 65.0
Hund11352 Selenicereus undatus HOM05D004623 ORTHO05D005100 1.1e-136 491.1 472 65.5
Rhsim02G0251800 Rhododendron simsii HOM05D004623 ORTHO05D005100 1.8e-136 490.3 594 52.5
Sopen08g031290 Solanum pennellii HOM05D004623 ORTHO05D005100 1.8e-136 490.3 451 70.3
Gohir.D03G085500 Gossypium hirsutum HOM05D004623 ORTHO05D005100 3.2e-136 489.6 479 68.7
Gohir.A02G098100 Gossypium hirsutum HOM05D004623 ORTHO05D005100 4.1e-136 489.2 519 67.2
SalBow1G2042 Salvia bowleyana HOM05D004623 ORTHO05D005100 4.1e-136 489.2 466 69.5
TAR629G1871 Trochodendron aralioides HOM05D004623 ORTHO05D005100 1.6e-135 487.3 472 67.8
Migut.E00632 Erythranthe guttata HOM05D004623 ORTHO05D005100 2.7e-135 486.5 521 63.5
Sed0004618 Sechium edule HOM05D004623 ORTHO05D005100 4.6e-135 485.7 503 61.6
ClCG10G000820 Citrullus lanatus HOM05D004623 ORTHO05D005100 1.0e-134 484.6 553 57.3
Sabra03G0106400 Salix brachista HOM05D004623 ORTHO05D005100 1.0e-134 484.6 507 66.1
TAR375G0778 Trochodendron aralioides HOM05D004623 ORTHO05D005100 1.0e-134 484.6 497 66.4
QL02p028195 Quercus lobata HOM05D004623 ORTHO05D005100 1.3e-134 484.2 395 79.0
unitig_62.g23647 Utricularia gibba HOM05D004623 ORTHO05D005100 2.3e-134 483.4 429 73.4
Gorai.003G076800 Gossypium raimondii HOM05D004623 ORTHO05D005100 1.5e-133 480.7 496 66.3
AUR62007050 Chenopodium quinoa HOM05D004623 ORTHO05D005100 1.9e-133 480.3 475 63.2
GSVIVG01019647001 Vitis vinifera HOM05D004623 ORTHO05D005100 1.9e-133 480.3 428 68.0
Hma1.2p1_0456F.1_g156590 Hydrangea macrophylla HOM05D004623 ORTHO05D005100 2.0e-130 470.3 456 62.5
HanXRQChr03g0086131 Helianthus annuus HOM05D004623 ORTHO05D005100 7.5e-130 468.4 437 69.6
DCAR_006543 Daucus carota HOM05D004623 ORTHO05D005100 9.8e-130 468.0 450 64.0
CDE09G0653 Ceratophyllum demersum HOM05D004623 ORTHO05D005100 1.9e-128 463.8 474 61.6
SEGI_26605 Sequoiadendron giganteum HOM05D004623 ORTHO05D005100 2.4e-128 463.4 423 72.3
MELO3C013775.2 Cucumis melo HOM05D004623 ORTHO05D005100 3.2e-128 463.0 600 49.2
vmacro11504 Vaccinium macrocarpon HOM05D004623 ORTHO05D005100 3.2e-128 463.0 529 53.3
ATR0620G132 Amborella trichopoda HOM05D004623 ORTHO05D005100 2.7e-127 459.9 382 69.1
Duzib068G0531 Durio zibethinus HOM05D004623 ORTHO05D005100 1.0e-126 458.0 469 67.6
Lalb_Chr02g0149581 Lupinus albus HOM05D004623 ORTHO05D005100 3.0e-126 456.4 480 66.0
Glyma.10G172800 Glycine max HOM05D004623 ORTHO05D005100 8.6e-126 454.9 481 60.9
Os03g0113800 Oryza sativa ssp. japonica HOM05D004623 ORTHO05D005100 3.3e-125 453.0 453 61.6
MD06G1118100 Malus domestica HOM05D004623 ORTHO05D005100 1.4e-123 447.6 357 68.9
Lj8A201G75 Lonicera japonica HOM05D004623 ORTHO05D005100 1.8e-123 447.2 403 65.5
AUR62019914 Chenopodium quinoa HOM05D004623 ORTHO05D005100 5.2e-123 445.7 469 66.7
Dinv16877 Davidia involucrata HOM05D004623 ORTHO05D005100 3.4e-122 443.0 432 62.5
Manes.01G051700 Manihot esculenta HOM05D004623 ORTHO05D005100 3.4e-122 443.0 468 66.9
Sc22g0004710 Simmondsia chinensis HOM05D004623 ORTHO05D005100 1.1e-120 438.0 469 64.6
Zm00001eb220090 Zea mays HOM05D004623 ORTHO05D005100 2.4e-120 436.8 453 60.5
Lsat_1_v5_gn_3_14141 Lactuca sativa HOM05D004623 ORTHO05D005100 1.7e-118 430.6 423 68.6
ECA246G3914 Erigeron canadensis HOM05D004623 ORTHO05D005100 2.8e-116 423.3 434 66.4
EL10Ac5g12433 Beta vulgaris HOM05D004623 ORTHO05D005100 1.1e-112 411.4 481 55.9
ECA240G2146 Erigeron canadensis HOM05D004623 ORTHO05D005100 3.3e-109 399.8 422 65.4
Oeu041377.1 Olea europaea HOM05D004623 ORTHO05D005100 5.6e-109 399.1 466 60.9
Mapoly0068s0096 Marchantia polymorpha HOM05D004623 ORTHO05D005100 2.8e-108 396.7 435 61.1
Lsat_1_v5_gn_6_82240 Lactuca sativa HOM05D004623 ORTHO05D005100 2.4e-107 393.7 512 58.2
Manes.02G003100 Manihot esculenta HOM05D004623 ORTHO05D005100 2.6e-106 390.2 383 71.8
Os10g0518300 Oryza sativa ssp. japonica HOM05D004623 ORTHO05D005100 9.9e-106 388.3 467 55.2
Peaxi162Scf00074g00026 Petunia axillaris HOM05D004623 ORTHO05D005100 1.2e-103 381.3 477 49.5
Zm00001eb043430 Zea mays HOM05D004623 ORTHO05D005100 8.7e-102 375.2 420 59.0
HanXRQChr06g0166801 Helianthus annuus HOM05D004623 ORTHO05D005100 2.8e-100 370.2 395 65.8
BolC6t37215H Brassica oleracea HOM05D004623 ORTHO05D005100 7.6e-98 362.1 241 80.1
AagrBONN_evm.TU.Sc2ySwM_344.2453 Anthoceros agrestis HOM05D004623 ORTHO05D005100 2.2e-97 360.5 421 60.8
HPP92_007396 Vanilla planifolia HOM05D004623 ORTHO05D005100 7.1e-96 355.5 330 65.5
Actinidia22205 Actinidia chinensis HOM05D004623 ORTHO05D005100 1.2e-90 338.2 331 65.3
TWI15G1120 Tripterygium wilfordii HOM05D004623 ORTHO05D005100 9.3e-88 328.6 337 58.5
Pp3c1_15130 Physcomitrium patens HOM05D004623 ORTHO05D005100 4.8e-84 316.2 437 53.8
HanXRQChr17g0534721 Helianthus annuus HOM05D004623 ORTHO05D005100 6.9e-83 312.4 345 66.7
Migut.E00624 Erythranthe guttata HOM05D004623 ORTHO05D005100 1.5e-82 311.2 356 66.9
MBI12_g13717_MAGBIO Magnolia biondii HOM05D004623 ORTHO05D005100 5.7e-77 292.7 600 42.2
SMO134G0154 Selaginella moellendorffii HOM05D004623 ORTHO05D005100 5.7e-77 292.7 280 55.4
CBR_g24226 Chara braunii HOM05D004623 ORTHO05D005100 5.9e-74 282.7 482 47.3
Oeu013386.1 Olea europaea HOM05D004623 ORTHO05D005100 4.6e-71 273.1 288 72.9
Pp3c2_21950 Physcomitrium patens HOM05D004623 ORTHO05D005100 2.3e-62 244.2 380 38.4
C06p20370 Brassica napus HOM05D004623 ORTHO05D005100 4.4e-61 240.0 182 72.5
Gorai.001G213600 Gossypium raimondii HOM05D004623 ORTHO05D005100 2.2e-52 211.1 153 68.0
Gohir.A06G102600 Gossypium hirsutum HOM05D004623 ORTHO05D005100 5.5e-48 196.4 142 67.6
Gorai.003G053400 Gossypium raimondii HOM05D004623 ORTHO05D005100 9.4e-48 195.7 142 67.6
Gohir.D05G097100 Gossypium hirsutum HOM05D004623 ORTHO05D005100 3.6e-47 193.7 142 66.9
HanXRQChr05g0133491 Helianthus annuus HOM05D004623 ORTHO05D005100 4.0e-46 190.3 135 71.9
Gohir.D08G109908 Gossypium hirsutum HOM05D004623 ORTHO05D005100 2.4e-43 181.0 169 56.8
Gorai.002G111300 Gossypium raimondii HOM05D004623 ORTHO05D005100 3.8e-41 173.7 135 63.7
Gohir.D01G085875 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.1e-40 172.2 135 62.2
BcaC08g44571 Brassica carinata HOM05D004623 ORTHO05D005100 1.8e-35 154.8 93 83.9
Gohir.D03G136750 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.6e-34 151.8 172 50.0
Gohir.D07G097001 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.7e-33 148.3 129 59.7
SEGI_12617 Sequoiadendron giganteum HOM05D004623 ORTHO05D005100 4.2e-32 143.7 95 76.8
SEGI_10381 Sequoiadendron giganteum HOM05D004623 ORTHO05D005100 3.4e-29 134.0 114 58.8
Gohir.D04G089675 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.9e-24 118.2 73 74.0
MCO14G177 Micromonas commoda HOM05D004623 ORTHO05D005100 4.7e-23 113.6 460 24.8
Glyma.02G157002 Glycine max HOM05D000518 ORTHO05D005100 3.3e-16 90.9 61 73.8
Cre09.g387550 Chlamydomonas reinhardtii HOM05D004623 ORTHO05D005100 3.6e-15 87.4 208 32.2
TPR.G39353 Trifolium pratense HOM05D004623 ORTHO05D005100 8.0e-15 86.3 55 72.7
Actinidia15203 Actinidia chinensis HOM05D004623 ORTHO05D005100 1.1e-11 75.9 71 62.0
Actinidia19830 Actinidia chinensis HOM05D004623 ORTHO05D005100 7.0e-11 73.2 52 73.1
MD08G1234800 Malus domestica HOM05D008315 ORTHO05D009452 6.0e-10 70.1 82 51.2
Lsat_1_v5_gn_3_125120 Lactuca sativa HOM05D004623 ORTHO05D005100 2.8e-07 61.2 123 35.8
Lsat_1_v5_gn_1_84960 Lactuca sativa HOM05D004623 ORTHO05D005100 1.4e-06 58.9 107 37.4
Lsat_1_v5_gn_9_31241 Lactuca sativa HOM05D000436 ORTHO05D000678 8.9e-06 56.2 35 65.7


User provided reference genes

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